HG10008330 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008330
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-H2 finger protein ATL43
Location	Chr10: 22068064 .. 22068846 (-)
RNA-Seq Expression	HG10008330
Synteny	HG10008330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGCCCTTCCCAATCGCTTCTCCTTCTCCTTCTCTCTCTTCTCTCTAATTTTTCTCTTCACTGCCGTCTCACCGGCAACTGCTACAGCCGGCGACCGACCTCTAAAGCTTACCCTACCTCACCCTTTTCTGTATCGTTTCAAGGCCTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCACCGCCACCGCCGTCGTTTACCTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACTACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCGGTGATCGAATCGTTGCCGATTTTCCGATTTGGTTCGTTGAGTGGACAGAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAGGTTCTGAGACTTCTCCCGAAATGCAAACACGCGTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCCCACTCCACTTGCCCTCTCTGTCGCTACAGAGTTGACCCAGAGGACGGCTTATTATTCGAAGACGTGAATATATTTCTCCACAAAGTGGGAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCCGTCGGCGAGAAAAGAACAGGGGAGTCCAGTTACCGTGATCCGGCATTGTTGA

mRNA sequence

ATGGGCGCCCTTCCCAATCGCTTCTCCTTCTCCTTCTCTCTCTTCTCTCTAATTTTTCTCTTCACTGCCGTCTCACCGGCAACTGCTACAGCCGGCGACCGACCTCTAAAGCTTACCCTACCTCACCCTTTTCTGTATCGTTTCAAGGCCTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCACCGCCACCGCCGTCGTTTACCTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACTACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCGGTGATCGAATCGTTGCCGATTTTCCGATTTGGTTCGTTGAGTGGACAGAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAGGTTCTGAGACTTCTCCCGAAATGCAAACACGCGTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCCCACTCCACTTGCCCTCTCTGTCGCTACAGAGTTGACCCAGAGGACGGCTTATTATTCGAAGACGTGAATATATTTCTCCACAAAGTGGGAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCCGTCGGCGAGAAAAGAACAGGGGAGTCCAGTTACCGTGATCCGGCATTGTTGA

Coding sequence (CDS)

ATGGGCGCCCTTCCCAATCGCTTCTCCTTCTCCTTCTCTCTCTTCTCTCTAATTTTTCTCTTCACTGCCGTCTCACCGGCAACTGCTACAGCCGGCGACCGACCTCTAAAGCTTACCCTACCTCACCCTTTTCTGTATCGTTTCAAGGCCTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCACCGCCACCGCCGTCGTTTACCTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACTACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCGGTGATCGAATCGTTGCCGATTTTCCGATTTGGTTCGTTGAGTGGACAGAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAGGTTCTGAGACTTCTCCCGAAATGCAAACACGCGTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCCCACTCCACTTGCCCTCTCTGTCGCTACAGAGTTGACCCAGAGGACGGCTTATTATTCGAAGACGTGAATATATTTCTCCACAAAGTGGGAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCCGTCGGCGAGAAAAGAACAGGGGAGTCCAGTTACCGTGATCCGGCATTGTTGA

Protein sequence

MGALPNRFSFSFSLFSLIFLFTAVSPATATAGDRPLKLTLPHPFLYRFKALKETVFVASPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPGESPADTHPSARKEQGSPVTVIRHC

Homology

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BLAST of HG10008330 vs. NCBI nr
Match: XP_038879064.1 (RING-H2 finger protein ATL43 [Benincasa hispida])

HSP 1 Score: 430.3 bits (1105), Expect = 1.2e-116
Identity = 215/238 (90.34%), Postives = 218/238 (91.60%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATATAGDRPLKLTLPHPFLYRFKALKETVFVASP 60
           MGALPN    SFSLFSLIFLFTAVSPA ATAG  PL L LPHPFLYRFK+LKET+FVASP
Sbjct: 1   MGALPN----SFSLFSLIFLFTAVSPAAATAGGPPLNLILPHPFLYRFKSLKETLFVASP 60

Query: 61  SPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVG 120
           SPPPPPSF SAPPPEEKPVYS FRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVV+G
Sbjct: 61  SPPPPPSFPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVIG 120

Query: 121 YSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVL 180
           YSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEP EVL
Sbjct: 121 YSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPAEVL 180

Query: 181 RLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPGES 239
           RLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFLH    L P ES
Sbjct: 181 RLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPPPLPPRES 234

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BLAST of HG10008330 vs. NCBI nr
Match: XP_022973977.1 (RING-H2 finger protein ATL43 [Cucurbita maxima])

HSP 1 Score: 377.5 bits (968), Expect = 9.4e-101
Identity = 192/242 (79.34%), Postives = 204/242 (84.30%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATATA---GDRPLKLTLPHPFLYRFKALKETVFV 60
           MG LP+ F     LFSLIFLFT VSPA A A   GD  L L LPHP LYRFKA++ETVF 
Sbjct: 1   MGTLPDSF-----LFSLIFLFTVVSPAAAAAALPGDPSLHLLLPHPILYRFKAIQETVFD 60

Query: 61  ASPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAV 120
           ASPSPPPPP   S PPPE+KPVYS+FRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAV
Sbjct: 61  ASPSPPPPP-LPSPPPPEDKPVYSTFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAV 120

Query: 121 VVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPT 180
           VVGYS  PN++MG PSF+TRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCL++FE T
Sbjct: 121 VVGYSRYPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQT 180

Query: 181 EVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPGE 240
           E+LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFL+      P  
Sbjct: 181 EILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPL 236

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BLAST of HG10008330 vs. NCBI nr
Match: XP_031738385.1 (RING-H2 finger protein ATL43 [Cucumis sativus] >KGN65511.1 hypothetical protein Csa_020096 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 1.2e-100
Identity = 204/260 (78.46%), Postives = 207/260 (79.62%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATATAGDRPLKLTLPHPFLYRFKALKETVFVA-- 60
           MG LPN    SFSLFSL FLFTAVSPA  T   RPL L L HP       LKETVF+A  
Sbjct: 1   MGTLPN----SFSLFSLFFLFTAVSPAAPTTYHRPLNLILTHP-------LKETVFLASS 60

Query: 61  SPSPPPPPSF-TSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGN-A 120
           S SPPPPP F  SAPPPEEKPVYS FRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGN A
Sbjct: 61  SSSPPPPPLFIPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAA 120

Query: 121 VVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEP 180
           VVVGYSMRPNTMMGVPSFSTRKNSGIDQ VIESLPIFRFGSLSGQKEGLECAVCLNRFEP
Sbjct: 121 VVVGYSMRPNTMMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCLNRFEP 180

Query: 181 TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPG 240
           TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFLH      P 
Sbjct: 181 TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHD----QPP 240

Query: 241 ESPADTHPSARKEQGSPVTV 257
             P    P  R+     V +
Sbjct: 241 PPPQPPPPPPRESNSKDVVL 245

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BLAST of HG10008330 vs. NCBI nr
Match: KAG7021678.1 (RING-H2 finger protein ATL43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.3 bits (965), Expect = 2.1e-100
Identity = 191/241 (79.25%), Postives = 203/241 (84.23%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATATA--GDRPLKLTLPHPFLYRFKALKETVFVA 60
           MG LP+ F     LFSLIFLFT VSPA A A  GD  L L LPHP LYRFKA++ETVF A
Sbjct: 1   MGTLPDSF-----LFSLIFLFTVVSPAAAAALPGDPSLNLLLPHPILYRFKAIQETVFDA 60

Query: 61  SPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVV 120
           SPSPPPPP   S PPPE+KPVYS FRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVV
Sbjct: 61  SPSPPPPP-LPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVV 120

Query: 121 VGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTE 180
           VGYS  PN+++G PSF+TRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCL++FE TE
Sbjct: 121 VGYSRYPNSVIGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTE 180

Query: 181 VLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPGES 240
           +LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFL+      P   
Sbjct: 181 ILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPMP 235

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BLAST of HG10008330 vs. NCBI nr
Match: XP_023531143.1 (RING-H2 finger protein ATL43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 2.7e-100
Identity = 191/240 (79.58%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATAT-AGDRPLKLTLPHPFLYRFKALKETVFVAS 60
           MG LP+ F     LFSLIFLFT VSPA A   GD  L L LPHP LYRFKA++ETVF AS
Sbjct: 1   MGTLPDSF-----LFSLIFLFTVVSPAAAALPGDPSLNLLLPHPILYRFKAIQETVFDAS 60

Query: 61  PSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVV 120
           PSPPPPP   S PPPE+KPVYS FRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVV
Sbjct: 61  PSPPPPP-LPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVV 120

Query: 121 GYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEV 180
           GYS  PN++MG PSF+TRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCL++FE TE+
Sbjct: 121 GYSRYPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEI 180

Query: 181 LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPGESP 240
           LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFL+      P   P
Sbjct: 181 LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPLPP 234

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BLAST of HG10008330 vs. ExPASy Swiss-Prot
Match: Q5EAE9 (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 4.8e-55
Identity = 117/189 (61.90%), Postives = 129/189 (68.25%), Query Frame = 0


Query: 44  FLYRFKALKETVFVASPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFL 103
           FL    A   T  V + S  PPP    +PPP      SS  P +AVV+ VLT  FS+TFL
Sbjct: 16  FLNVSLADNHTAVVITTSDTPPPLPPPSPPPRHN-FTSSLMPGIAVVIAVLTAFFSLTFL 75

Query: 104 LLLYAKHCKRGN-AVVVGYSMR-------PNTMMGVPSFSTRKNSGIDQAVIESLPIFRF 163
           LLLY KHCKR N +V V +  R            G      RKNSGID++VIESLP+FRF
Sbjct: 76  LLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRF 135

Query: 164 GSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 223
           G+LSG K+GLECAVCL RFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE
Sbjct: 136 GALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 195

Query: 224 DGLLFEDVN 225
           D LL  D N
Sbjct: 196 DILLIGDCN 203

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BLAST of HG10008330 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-35
Identity = 74/166 (44.58%), Postives = 109/166 (65.66%), Query Frame = 0


Query: 56  FVASPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAK---HCK 115
           +V++ SPPPP  + ++           F+PS+A++ GV +  F++TF+LL+YAK   +  
Sbjct: 19  YVSAQSPPPPNLYATS---------DLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDL 78

Query: 116 RGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLN 175
           R      G  +R + +       + + SG+D+  IESLP FRF +L G K+GLEC+VCL+
Sbjct: 79  RSETDSDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLS 138

Query: 176 RFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGL 219
           +FE  E+LRLLPKC+HAFH+ C+D WL+ H+TCPLCR RV+ ED L
Sbjct: 139 KFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDL 175

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BLAST of HG10008330 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-35
Identity = 72/156 (46.15%), Postives = 102/156 (65.38%), Query Frame = 0


Query: 67  SFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCK------RGNAVVVG 126
           S  + PP     + ++F PS+AVV GVL   F++TF+LL+YAK C        G+     
Sbjct: 17  SAQTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHD 76

Query: 127 YSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVL 186
             +R        + S+ + SG+D+  IESLP+FRF +L G K+GL+C+VCL++FE  E+L
Sbjct: 77  RRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEIL 136

Query: 187 RLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED 217
           RLLPKC+HAFH+ C+D WL+ H+TCPLCR RV  E+
Sbjct: 137 RLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEE 172

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BLAST of HG10008330 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-25
Identity = 60/146 (41.10%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 67  SFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPN 126
           SF+ +PP     + +   PS   V  VL T F +T LL +Y +HC R N        R  
Sbjct: 30  SFSPSPP----DLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNR 89

Query: 127 TMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEG---LECAVCLNRFEPTEVLRLL 186
              G     + +  G+D AV+ES P+F + S+   K G   LECA+CLN  E  E +RLL
Sbjct: 90  ANDG-----SSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLL 149

Query: 187 PKCKHAFHVECVDTWLDAHSTCPLCR 210
           P C H FH++C+DTWL +H+TCP+CR
Sbjct: 150 PICNHLFHIDCIDTWLYSHATCPVCR 166

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BLAST of HG10008330 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-24
Identity = 58/153 (37.91%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 62  PPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGY 121
           PPPPPSF      +     SSF P +  ++G+LT+   +     L +K+C R +      
Sbjct: 35  PPPPPSFFL--DDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSE 94

Query: 122 SMRPNTMMGVPSFSTRK-----NSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEP 181
           ++  N   G   FS+ +       G+++++I+S+ ++++ S  G  +G +C+VCL+ FE 
Sbjct: 95  TLNLN-HNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEE 154

Query: 182 TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 210
            E LRLLPKC HAFH+ C+DTWL +HS CPLCR
Sbjct: 155 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR 184

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BLAST of HG10008330 vs. ExPASy TrEMBL
Match: A0A6J1I903 (RING-H2 finger protein ATL43 OS=Cucurbita maxima OX=3661 GN=LOC111472589 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.6e-101
Identity = 192/242 (79.34%), Postives = 204/242 (84.30%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATATA---GDRPLKLTLPHPFLYRFKALKETVFV 60
           MG LP+ F     LFSLIFLFT VSPA A A   GD  L L LPHP LYRFKA++ETVF 
Sbjct: 1   MGTLPDSF-----LFSLIFLFTVVSPAAAAAALPGDPSLHLLLPHPILYRFKAIQETVFD 60

Query: 61  ASPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAV 120
           ASPSPPPPP   S PPPE+KPVYS+FRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAV
Sbjct: 61  ASPSPPPPP-LPSPPPPEDKPVYSTFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAV 120

Query: 121 VVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPT 180
           VVGYS  PN++MG PSF+TRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCL++FE T
Sbjct: 121 VVGYSRYPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQT 180

Query: 181 EVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPGE 240
           E+LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFL+      P  
Sbjct: 181 EILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPL 236

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BLAST of HG10008330 vs. ExPASy TrEMBL
Match: A0A0A0M016 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G433100 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.9e-101
Identity = 204/260 (78.46%), Postives = 207/260 (79.62%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATATAGDRPLKLTLPHPFLYRFKALKETVFVA-- 60
           MG LPN    SFSLFSL FLFTAVSPA  T   RPL L L HP       LKETVF+A  
Sbjct: 1   MGTLPN----SFSLFSLFFLFTAVSPAAPTTYHRPLNLILTHP-------LKETVFLASS 60

Query: 61  SPSPPPPPSF-TSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGN-A 120
           S SPPPPP F  SAPPPEEKPVYS FRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGN A
Sbjct: 61  SSSPPPPPLFIPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAA 120

Query: 121 VVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEP 180
           VVVGYSMRPNTMMGVPSFSTRKNSGIDQ VIESLPIFRFGSLSGQKEGLECAVCLNRFEP
Sbjct: 121 VVVGYSMRPNTMMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCLNRFEP 180

Query: 181 TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPG 240
           TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFLH      P 
Sbjct: 181 TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHD----QPP 240

Query: 241 ESPADTHPSARKEQGSPVTV 257
             P    P  R+     V +
Sbjct: 241 PPPQPPPPPPRESNSKDVVL 245

[Close]

BLAST of HG10008330 vs. ExPASy TrEMBL
Match: A0A6J1EU36 (RING-H2 finger protein ATL43 OS=Cucurbita moschata OX=3662 GN=LOC111437573 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.9e-100
Identity = 190/240 (79.17%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATAT-AGDRPLKLTLPHPFLYRFKALKETVFVAS 60
           MG LP+ F     LFSLIFLFT VSPA A   GD  L L LPHP LYRFKA++ETVF AS
Sbjct: 1   MGTLPDSF-----LFSLIFLFTVVSPAAAALPGDPSLNLLLPHPILYRFKAIQETVFDAS 60

Query: 61  PSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVV 120
           PSPPPPP   S PPPE+KPVYS FRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVV
Sbjct: 61  PSPPPPP-LPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVV 120

Query: 121 GYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEV 180
           GYS  PN+++G PSF+TRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCL++FE TE+
Sbjct: 121 GYSRYPNSVIGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEI 180

Query: 181 LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGRLDPGESP 240
           LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFL+      P   P
Sbjct: 181 LRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPLPP 234

[Close]

BLAST of HG10008330 vs. ExPASy TrEMBL
Match: A0A5A7UX38 (RING-H2 finger protein ATL43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005050 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.4e-97
Identity = 199/265 (75.09%), Postives = 203/265 (76.60%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATATAGDRPLKLTLPHPFLYRFKALKETVFVA-- 60
           MG LPN    SFSLFSL FLF AVSPA  T   R L L L H        LKETVF+A  
Sbjct: 1   MGTLPN----SFSLFSLFFLFIAVSPAAPTTDLRSLNLILTH-------HLKETVFLASS 60

Query: 61  -----SPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKR 120
                S SPPPPP   SAPPPEEKPVYS FRPSMAVVVGVLTTTFSITFLLLLYAKHCKR
Sbjct: 61  SSSSSSSSPPPPPFIPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKR 120

Query: 121 GN-AVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLN 180
           GN AVVVGYSMRPNT MGVPSFSTRKNSGIDQ VIESLPIFRFGSLSGQKEGLECAVCLN
Sbjct: 121 GNGAVVVGYSMRPNTTMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCLN 180

Query: 181 RFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVGR 240
           RFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFLH    
Sbjct: 181 RFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLH---- 240

Query: 241 LDPGESPADTHPSARKEQGSPVTVI 258
               + P    P   +E  S   V+
Sbjct: 241 ---NQPPPPPPPPPPRESNSKDVVL 247

[Close]

BLAST of HG10008330 vs. ExPASy TrEMBL
Match: A0A5D3DZ82 (RING-H2 finger protein ATL43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001970 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.8e-97
Identity = 199/266 (74.81%), Postives = 203/266 (76.32%), Query Frame = 0


Query: 1   MGALPNRFSFSFSLFSLIFLFTAVSPATATAGDRPLKLTLPHPFLYRFKALKETVFVA-- 60
           MG LPN    SFSLFSL FLF AVSPA  T   R L L L H        LKETVF+A  
Sbjct: 1   MGTLPN----SFSLFSLFFLFIAVSPAAPTTDLRSLNLILTH-------HLKETVFLASS 60

Query: 61  ------SPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCK 120
                 S SPPPPP   SAPPPEEKPVYS FRPSMAVVVGVLTTTFSITFLLLLYAKHCK
Sbjct: 61  SSSSSSSSSPPPPPFIPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCK 120

Query: 121 RGN-AVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCL 180
           RGN AVVVGYSMRPNT MGVPSFSTRKNSGIDQ VIESLPIFRFGSLSGQKEGLECAVCL
Sbjct: 121 RGNGAVVVGYSMRPNTTMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCL 180

Query: 181 NRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGLLFEDVNIFLHKVG 240
           NRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED LL EDVNIFLH   
Sbjct: 181 NRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLH--- 240

Query: 241 RLDPGESPADTHPSARKEQGSPVTVI 258
                + P    P   +E  S   V+
Sbjct: 241 ----NQPPPPPPPPPPRESNSKDVVL 248

[Close]

BLAST of HG10008330 vs. TAIR 10
Match: AT5G05810.1 (RING/U-box superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 4.6e-53
Identity = 103/148 (69.59%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 85  PSMAVVVGVLTTTFSITFLLLLYAKHCKRGN-AVVVGYSMR-------PNTMMGVPSFST 144
           P +AVV+ VLT  FS+TFLLLLY KHCKR N +V V +  R            G      
Sbjct: 2   PGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGG 61

Query: 145 RKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVD 204
           RKNSGID++VIESLP+FRFG+LSG K+GLECAVCL RFEPTEVLRLLPKCKHAFHVECVD
Sbjct: 62  RKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVD 121

Query: 205 TWLDAHSTCPLCRYRVDPEDGLLFEDVN 225
           TWLDAHSTCPLCRYRVDPED LL  D N
Sbjct: 122 TWLDAHSTCPLCRYRVDPEDILLIGDCN 149

[Close]

BLAST of HG10008330 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-36
Identity = 74/166 (44.58%), Postives = 109/166 (65.66%), Query Frame = 0


Query: 56  FVASPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAK---HCK 115
           +V++ SPPPP  + ++           F+PS+A++ GV +  F++TF+LL+YAK   +  
Sbjct: 19  YVSAQSPPPPNLYATS---------DLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDL 78

Query: 116 RGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLN 175
           R      G  +R + +       + + SG+D+  IESLP FRF +L G K+GLEC+VCL+
Sbjct: 79  RSETDSDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLS 138

Query: 176 RFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDGL 219
           +FE  E+LRLLPKC+HAFH+ C+D WL+ H+TCPLCR RV+ ED L
Sbjct: 139 KFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDL 175

[Close]

BLAST of HG10008330 vs. TAIR 10
Match: AT4G28890.1 (RING/U-box superfamily protein )

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-36
Identity = 72/156 (46.15%), Postives = 102/156 (65.38%), Query Frame = 0


Query: 67  SFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCK------RGNAVVVG 126
           S  + PP     + ++F PS+AVV GVL   F++TF+LL+YAK C        G+     
Sbjct: 17  SAQTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHD 76

Query: 127 YSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVL 186
             +R        + S+ + SG+D+  IESLP+FRF +L G K+GL+C+VCL++FE  E+L
Sbjct: 77  RRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEIL 136

Query: 187 RLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED 217
           RLLPKC+HAFH+ C+D WL+ H+TCPLCR RV  E+
Sbjct: 137 RLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEE 172

[Close]

BLAST of HG10008330 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-26
Identity = 60/146 (41.10%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 67  SFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPN 126
           SF+ +PP     + +   PS   V  VL T F +T LL +Y +HC R N        R  
Sbjct: 30  SFSPSPP----DLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNR 89

Query: 127 TMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEG---LECAVCLNRFEPTEVLRLL 186
              G     + +  G+D AV+ES P+F + S+   K G   LECA+CLN  E  E +RLL
Sbjct: 90  ANDG-----SSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLL 149

Query: 187 PKCKHAFHVECVDTWLDAHSTCPLCR 210
           P C H FH++C+DTWL +H+TCP+CR
Sbjct: 150 PICNHLFHIDCIDTWLYSHATCPVCR 166

[Close]

BLAST of HG10008330 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-25
Identity = 58/153 (37.91%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 62  PPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGY 121
           PPPPPSF      +     SSF P +  ++G+LT+   +     L +K+C R +      
Sbjct: 35  PPPPPSFFL--DDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSE 94

Query: 122 SMRPNTMMGVPSFSTRK-----NSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEP 181
           ++  N   G   FS+ +       G+++++I+S+ ++++ S  G  +G +C+VCL+ FE 
Sbjct: 95  TLNLN-HNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEE 154

Query: 182 TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 210
            E LRLLPKC HAFH+ C+DTWL +HS CPLCR
Sbjct: 155 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR 184

The following BLAST results are available for this feature:

BLAST of HG10008330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879064.1	1.2e-116	90.34	RING-H2 finger protein ATL43 [Benincasa hispida]	[more]
XP_022973977.1	9.4e-101	79.34	RING-H2 finger protein ATL43 [Cucurbita maxima]	[more]
XP_031738385.1	1.2e-100	78.46	RING-H2 finger protein ATL43 [Cucumis sativus] >KGN65511.1 hypothetical protein ...	[more]
KAG7021678.1	2.1e-100	79.25	RING-H2 finger protein ATL43, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023531143.1	2.7e-100	79.58	RING-H2 finger protein ATL43 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10008330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAE9	4.8e-55	61.90	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2	[more]
Q9SL78	1.4e-35	44.58	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]
Q5XF85	1.4e-35	46.15	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]
Q8W571	2.3e-25	41.10	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q9LF64	1.9e-24	37.91	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]

BLAST of HG10008330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I903	4.6e-101	79.34	RING-H2 finger protein ATL43 OS=Cucurbita maxima OX=3661 GN=LOC111472589 PE=4 SV...	[more]
A0A0A0M016	5.9e-101	78.46	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G433100 P...	[more]
A0A6J1EU36	3.9e-100	79.17	RING-H2 finger protein ATL43 OS=Cucurbita moschata OX=3662 GN=LOC111437573 PE=4 ...	[more]
A0A5A7UX38	1.4e-97	75.09	RING-H2 finger protein ATL43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DZ82	1.8e-97	74.81	RING-H2 finger protein ATL43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of HG10008330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05810.1	4.6e-53	69.59	RING/U-box superfamily protein	[more]
AT2G20030.1	1.0e-36	44.58	RING/U-box superfamily protein	[more]
AT4G28890.1	1.0e-36	46.15	RING/U-box superfamily protein	[more]
AT4G40070.1	1.6e-26	41.10	RING/U-box superfamily protein	[more]
AT5G17600.1	1.4e-25	37.91	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 167..208 e-value: 1.3E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 166..209 e-value: 2.3E-13 score: 50.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 167..209 score: 12.69582
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 141..216 e-value: 2.7E-22 score: 79.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..260
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 58..232
None	No IPR available	PANTHER	PTHR46539:SF2	RING-H2 FINGER PROTEIN ATL43	coord: 58..232
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 166..209 e-value: 5.0172E-18 score: 73.4983
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 147..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008330.1	HG10008330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane