HG10008314 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008314
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR6-like protein
Location	Chr10: 21924895 .. 21925221 (-)
RNA-Seq Expression	HG10008314
Synteny	HG10008314

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGGAAATTTTTGAGGAATTCCAACAACTTACACCATTATCCTCTCTTCAATTCATCCTTCCCAAAGAAAAAACGCAACAAGAACAAGAACAAGAACAGGAGCAAGAAGAATGTCTCACCCCCACCGCCGCCGCCGCCCGCCTGAAGCCGACCACGGTCTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCACGAAGGAAATTGAACTTTCAGCCACCTTCTTTCTTTGAAGCTCCACAAGATCTCAATTCTCTCTATTTTCAGCTTCATATTCCTTCCAAGAAAATCAAACCCATTTCTACTTCTTCTTTCCAACATTAA

mRNA sequence

ATGGGTATGGAAATTTTTGAGGAATTCCAACAACTTACACCATTATCCTCTCTTCAATTCATCCTTCCCAAAGAAAAAACGCAACAAGAACAAGAACAAGAACAGGAGCAAGAAGAATGTCTCACCCCCACCGCCGCCGCCGCCCGCCTGAAGCCGACCACGGTCTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCACGAAGGAAATTGAACTTTCAGCCACCTTCTTTCTTTGAAGCTCCACAAGATCTCAATTCTCTCTATTTTCAGCTTCATATTCCTTCCAAGAAAATCAAACCCATTTCTACTTCTTCTTTCCAACATTAA

Coding sequence (CDS)

ATGGGTATGGAAATTTTTGAGGAATTCCAACAACTTACACCATTATCCTCTCTTCAATTCATCCTTCCCAAAGAAAAAACGCAACAAGAACAAGAACAAGAACAGGAGCAAGAAGAATGTCTCACCCCCACCGCCGCCGCCGCCCGCCTGAAGCCGACCACGGTCTGTCCGCCGGCGCCCAAGAAACCTCGTCCTCCACGAAGGAAATTGAACTTTCAGCCACCTTCTTTCTTTGAAGCTCCACAAGATCTCAATTCTCTCTATTTTCAGCTTCATATTCCTTCCAAGAAAATCAAACCCATTTCTACTTCTTCTTTCCAACATTAA

Protein sequence

MGMEIFEEFQQLTPLSSLQFILPKEKTQQEQEQEQEQEECLTPTAAAARLKPTTVCPPAPKKPRPPRRKLNFQPPSFFEAPQDLNSLYFQLHIPSKKIKPISTSSFQH

Homology

[Close]

BLAST of HG10008314 vs. NCBI nr
Match: KGN65496.1 (hypothetical protein Csa_019987 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTPLSSLQFILPKEKTQQEQEQEQEQEECLTPTAAAARLKPTTVCPPAP 60
           MGMEI +EF  LTPLSSLQFI+PK KT+Q+Q+++QE EECLTPTAAAARLKP  +CPPAP
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQE-EECLTPTAAAARLKPAIICPPAP 60

Query: 61  KKPRPPRRKLNFQPPSFFEAPQDLNSLYFQLHIPSKKIKPI 102
           KKPRPPRRKLNF PP FFEAPQDLNS+YFQ HIPSKKIKPI
Sbjct: 61  KKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100

[Close]

BLAST of HG10008314 vs. NCBI nr
Match: KAG6589677.1 (hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 9.5e-31
Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTPLSSLQFILPKEKTQQEQEQEQEQEECLTPTAAAARLKPTTVCPPAP 60
           MGME+ EEF+ LTPL SL   LPKEK  Q     QEQE+C TPTAAA RLKPT VCPPAP
Sbjct: 1   MGMEVLEEFRPLTPLRSLSLQLPKEKADQ---NIQEQEDCQTPTAAATRLKPTMVCPPAP 60

Query: 61  KKPRPPRRKLNFQPPSFFEAPQDLNSLYFQLHIPSKKIKPIST 104
           KKPRPPRRKLNF PP FFEAPQDL+S+Y +L IPSKKIKPI+T
Sbjct: 61  KKPRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIKPITT 100

[Close]

BLAST of HG10008314 vs. NCBI nr
Match: KAG6587720.1 (hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-28
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTPL---SSLQFILPKEKTQQEQEQEQEQEECLTPTAAAARLKPTTVCP 60
           MGME+ +EF+ LTPL    SLQ  +PKE+      QEQ+ EEC TPTAA +RLKPT  CP
Sbjct: 1   MGMEVMDEFRPLTPLRLTPSLQ--IPKER---RDFQEQQPEECQTPTAAGSRLKPTMECP 60

Query: 61  PAPKKPRPPRRKLNFQPPSFFEAPQDLNSLYFQLHIPSKKIKPIST 104
           PAPKKPRPPRRKLNFQPPSFF+APQDL S+YF+L  PSKKIKPIST
Sbjct: 61  PAPKKPRPPRRKLNFQPPSFFDAPQDLKSVYFELQFPSKKIKPIST 101

[Close]

BLAST of HG10008314 vs. NCBI nr
Match: GAV59718.1 (hypothetical protein CFOL_v3_03249 [Cephalotus follicularis])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTP--------LSSLQFI--LPKEKTQQEQEQEQEQEECLTPTAAAARL 60
           MG+E+ EEF+ +T         L+S  ++  +   K  QE      +EEC TP +A + L
Sbjct: 1   MGLEMPEEFRPITTIRTVSTARLTSFSYVSKISDSKKTQELNGLDNEEECQTPKSAESTL 60

Query: 61  KPTTVCPPAPKKPRPPRRKLNFQPPSFFEAPQDLNSLYFQLHIPSKKIKPI 102
               VCPPAP K RPP+RKL   P  FFE P DL SL+F L+ PSKKI+PI
Sbjct: 61  --ILVCPPAPSKARPPKRKLCPPPQGFFEVPHDLASLFFSLNTPSKKIRPI 109

[Close]

BLAST of HG10008314 vs. NCBI nr
Match: KAE8056731.1 (hypothetical protein FH972_013476 [Carpinus fangiana])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTPLSSLQFILPKEKTQQEQEQEQEQE------ECLTPTAAAARLKPTT 60
           MG+EI EEF+ +TP+ ++          +  E E+ +E      EC TP ++   LK   
Sbjct: 1   MGLEILEEFRPVTPIRTISITRSSSHATELSEPEETKEVALDDVECHTPKSSVHTLKSPL 60

Query: 61  VCPPAPKKPRPPRRKLNFQPPSFFEAPQDLNSLYF-QLHIPSKKIK 100
           VCPPAPKKPRP RRKL+  P   F+ P DL S+ F  L  PSKKI+
Sbjct: 61  VCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106

[Close]

BLAST of HG10008314 vs. ExPASy TrEMBL
Match: A0A0A0M005 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.3e-37
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTPLSSLQFILPKEKTQQEQEQEQEQEECLTPTAAAARLKPTTVCPPAP 60
           MGMEI +EF  LTPLSSLQFI+PK KT+Q+Q+++QE EECLTPTAAAARLKP  +CPPAP
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQE-EECLTPTAAAARLKPAIICPPAP 60

Query: 61  KKPRPPRRKLNFQPPSFFEAPQDLNSLYFQLHIPSKKIKPI 102
           KKPRPPRRKLNF PP FFEAPQDLNS+YFQ HIPSKKIKPI
Sbjct: 61  KKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100

[Close]

BLAST of HG10008314 vs. ExPASy TrEMBL
Match: A0A1Q3AVG9 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTP--------LSSLQFI--LPKEKTQQEQEQEQEQEECLTPTAAAARL 60
           MG+E+ EEF+ +T         L+S  ++  +   K  QE      +EEC TP +A + L
Sbjct: 1   MGLEMPEEFRPITTIRTVSTARLTSFSYVSKISDSKKTQELNGLDNEEECQTPKSAESTL 60

Query: 61  KPTTVCPPAPKKPRPPRRKLNFQPPSFFEAPQDLNSLYFQLHIPSKKIKPI 102
               VCPPAP K RPP+RKL   P  FFE P DL SL+F L+ PSKKI+PI
Sbjct: 61  --ILVCPPAPSKARPPKRKLCPPPQGFFEVPHDLASLFFSLNTPSKKIRPI 109

[Close]

BLAST of HG10008314 vs. ExPASy TrEMBL
Match: A0A5N6R7V3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTPLSSLQFILPKEKTQQEQEQEQEQE------ECLTPTAAAARLKPTT 60
           MG+EI EEF+ +TP+ ++          +  E E+ +E      EC TP ++   LK   
Sbjct: 1   MGLEILEEFRPVTPIRTISITRSSSHATELSEPEETKEVALDDVECHTPKSSVHTLKSPL 60

Query: 61  VCPPAPKKPRPPRRKLNFQPPSFFEAPQDLNSLYF-QLHIPSKKIK 100
           VCPPAPKKPRP RRKL+  P   F+ P DL S+ F  L  PSKKI+
Sbjct: 61  VCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106

[Close]

BLAST of HG10008314 vs. ExPASy TrEMBL
Match: A0A059CL15 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00076 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-07
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 1   MGMEIFEEFQQLTPL--------SSLQFILPKEKTQQEQEQEQEQEECLTPTAAAARLKP 60
           MGM + EEF+  TP+        S L  + P E+ Q     + E +EC TP +    +  
Sbjct: 1   MGMGVSEEFRPSTPIRTIVVSSGSKLSDLAPCERKQLHSSPDDE-DECRTPKSCPDPMTG 60

Query: 61  TT--VCPPAPKKPRPPRRKLNFQPP-SFFEAPQDLNSLYFQLHIPSKKIK 100
            T   CPPAPKKPRPPRRK +  PP  FF+ P DL S++  +  PSKKI+
Sbjct: 61  HTARACPPAPKKPRPPRRKASGPPPQGFFQVPHDLASVFLVIGKPSKKIR 109

[Close]

BLAST of HG10008314 vs. ExPASy TrEMBL
Match: A0A151SX09 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_014753 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 1  MGMEIFEEFQQLTPL-------SSLQFILPKEKTQQEQEQEQEQEECLTPTAAAARLKPT 60
          MG+EI EEF+ +TP+        +L+  L   K    ++ E E EEC TPT+ +  L+  
Sbjct: 1  MGLEILEEFRPITPVRTLVPNARTLKHDLGTTKEVLNEDVENENEECHTPTSPSQTLRTP 60

Query: 61 TVCPPAPKKPRPPRRKLNFQPPS--FFEAPQDLNSLY 89
           VCPP PKKPR  R++  FQPPS  F   P DL S++
Sbjct: 61 LVCPPPPKKPRVTRKRNKFQPPSQGFLHVPHDLASVF 97

The following BLAST results are available for this feature:

BLAST of HG10008314 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65496.1	1.5e-36	81.19	hypothetical protein Csa_019987 [Cucumis sativus]	[more]
KAG6589677.1	9.5e-31	73.79	hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6587720.1	7.5e-28	69.81	hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sorori...	[more]
GAV59718.1	2.4e-10	45.05	hypothetical protein CFOL_v3_03249 [Cephalotus follicularis]	[more]
KAE8056731.1	3.5e-09	43.40	hypothetical protein FH972_013476 [Carpinus fangiana]	[more]

BLAST of HG10008314 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008314 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M005	7.3e-37	81.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1	[more]
A0A1Q3AVG9	1.2e-10	45.05	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4...	[more]
A0A5N6R7V3	1.7e-09	43.40	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1	[more]
A0A059CL15	1.6e-07	41.82	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00076 PE=4 SV...	[more]
A0A151SX09	3.5e-07	42.27	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_014753 PE=4 SV=1	[more]

BLAST of HG10008314 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..77
None	No IPR available	PANTHER	PTHR35162	OS08G0516600 PROTEIN	coord: 1..99
None	No IPR available	PANTHER	PTHR35162:SF2	OS08G0516600 PROTEIN	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008314.1	HG10008314.1	mRNA