HG10008267 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008267
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DUF761 domain-containing protein
Location	Chr10: 21375627 .. 21375998 (+)
RNA-Seq Expression	HG10008267
Synteny	HG10008267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

mRNA sequence

ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

Coding sequence (CDS)

ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

Protein sequence

MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDIIEEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQLMISP

Homology

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BLAST of HG10008267 vs. NCBI nr
Match: XP_038879799.1 (uncharacterized protein LOC120071543 [Benincasa hispida])

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAASS+L RLR AVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGL  CTEDII
Sbjct: 1   MAASSVLNRLRKAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLMACTEDII 60

Query: 61  EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQLM 120
           EE SVSSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNSFN+L+
Sbjct: 61  EEESVSSSRGLQRTTSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSFNKLI 120

Query: 121 ISP 124
           ISP
Sbjct: 121 ISP 123

[Close]

BLAST of HG10008267 vs. NCBI nr
Match: XP_023515447.1 (uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 106/125 (84.80%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAA+SLLGRLR AV+KLKFMM F+IQSWRLAAMLGRTSSRNLRLSFNE PGLK C EDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  E--EGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQ 120
           E  E S SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLEL+YCRGNSF Q
Sbjct: 61  ESSEHSNSSSRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGNSFKQ 120

Query: 121 LMISP 124
           L++SP
Sbjct: 121 LIVSP 125

[Close]

BLAST of HG10008267 vs. NCBI nr
Match: XP_022987374.1 (uncharacterized protein LOC111484948 [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 3.1e-46
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAA+SLLGRLRNAV+KLKFMM F+IQSWRLAAMLGRTSSRNLRLSFNE PGLK C EDII
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  E--EGSVSSSR-GIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 120
           E  E S SSSR G+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNS  
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSSK 120

Query: 121 QLMISP 124
           QL++SP
Sbjct: 121 QLIVSP 126

[Close]

BLAST of HG10008267 vs. NCBI nr
Match: XP_011648497.1 (uncharacterized protein LOC101218317 [Cucumis sativus] >KGN65448.1 hypothetical protein Csa_019865 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           M A SLLGRLR AVKK++FMMNFSIQ WRLAAMLGRTSSRNLRLSF ERPGLK C+EDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  --EEGSV-SSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
             EE SV SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNSF+
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

[Close]

BLAST of HG10008267 vs. NCBI nr
Match: XP_022135293.1 (uncharacterized protein LOC111007290 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 101/124 (81.45%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MA SSLLGRLR AV+K++FM+NFSIQSWRLAAM+GRTSSRNLRLSFNERPGLK CTED I
Sbjct: 1   MAGSSLLGRLRKAVRKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTED-I 60

Query: 61  EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSF-NQL 120
            E S   S G+QRTASYASEDDVD RA+ FIANFYRQL+IERQVSLELQYCRGNSF N L
Sbjct: 61  TESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHL 120

Query: 121 MISP 124
           +ISP
Sbjct: 121 LISP 123

[Close]

BLAST of HG10008267 vs. ExPASy TrEMBL
Match: A0A6J1JIQ4 (uncharacterized protein LOC111484948 OS=Cucurbita maxima OX=3661 GN=LOC111484948 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAA+SLLGRLRNAV+KLKFMM F+IQSWRLAAMLGRTSSRNLRLSFNE PGLK C EDII
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  E--EGSVSSSR-GIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 120
           E  E S SSSR G+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNS  
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSSK 120

Query: 121 QLMISP 124
           QL++SP
Sbjct: 121 QLIVSP 126

[Close]

BLAST of HG10008267 vs. ExPASy TrEMBL
Match: A0A0A0LUK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.9e-45
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           M A SLLGRLR AVKK++FMMNFSIQ WRLAAMLGRTSSRNLRLSF ERPGLK C+EDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  --EEGSV-SSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
             EE SV SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNSF+
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

[Close]

BLAST of HG10008267 vs. ExPASy TrEMBL
Match: A0A6J1C4F5 (uncharacterized protein LOC111007290 OS=Momordica charantia OX=3673 GN=LOC111007290 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.4e-45
Identity = 101/124 (81.45%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MA SSLLGRLR AV+K++FM+NFSIQSWRLAAM+GRTSSRNLRLSFNERPGLK CTED I
Sbjct: 1   MAGSSLLGRLRKAVRKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTED-I 60

Query: 61  EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSF-NQL 120
            E S   S G+QRTASYASEDDVD RA+ FIANFYRQL+IERQVSLELQYCRGNSF N L
Sbjct: 61  TESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHL 120

Query: 121 MISP 124
           +ISP
Sbjct: 121 LISP 123

[Close]

BLAST of HG10008267 vs. ExPASy TrEMBL
Match: A0A6J1E1K7 (uncharacterized protein LOC111429947 OS=Cucurbita moschata OX=3662 GN=LOC111429947 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 100/126 (79.37%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAA+SLLGRLR AV+KLKF+M F+IQSWRLAAMLGRTSSRNLRLSFNE PGLK C EDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ---EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 120
              E  + SS RG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLEL+YCRG+S  
Sbjct: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120

Query: 121 QLMISP 124
           QL++SP
Sbjct: 121 QLIVSP 126

[Close]

BLAST of HG10008267 vs. ExPASy TrEMBL
Match: A0A5D3CK96 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00610 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.2e-44
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLK-GCTEDI 60
           M A SLLGRLR AVKK+KFMMNFSIQ WRLAAMLGRTSSRNLRLSFNERPGLK  C+EDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  I--EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
           I  EE   SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCR NSF+
Sbjct: 61  IMEEEPVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRRNSFD 120

[Close]

BLAST of HG10008267 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-26
Identity = 72/121 (59.50%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 5   SLLGRLRNAVKKLKFMMNFSIQS-WRLAAMLG-RTSSRNLRLSFNERPGLKGC-TEDIIE 64
           SLL RLR AV K+KF+++F I S W L  MLG  +SS +LRLSFN+RPGL    TE+  E
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAAFTEN--E 67

Query: 65  EGSVSSSRG-IQRTASY--ASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGN--SF 118
             S  SSRG + RT SY  +S++D+D +AE FIANFYRQL+IERQ+SLEL+YC+GN  SF
Sbjct: 68  PDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSF 126

The following BLAST results are available for this feature:

BLAST of HG10008267 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879799.1	1.7e-52	91.06	uncharacterized protein LOC120071543 [Benincasa hispida]	[more]
XP_023515447.1	2.2e-47	84.80	uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo]	[more]
XP_022987374.1	3.1e-46	84.92	uncharacterized protein LOC111484948 [Cucurbita maxima]	[more]
XP_011648497.1	1.0e-44	85.83	uncharacterized protein LOC101218317 [Cucumis sativus] >KGN65448.1 hypothetical ...	[more]
XP_022135293.1	1.3e-44	81.45	uncharacterized protein LOC111007290 [Momordica charantia]	[more]

BLAST of HG10008267 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008267 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIQ4	1.5e-46	84.92	uncharacterized protein LOC111484948 OS=Cucurbita maxima OX=3661 GN=LOC111484948...	[more]
A0A0A0LUK4	4.9e-45	85.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1	[more]
A0A6J1C4F5	6.4e-45	81.45	uncharacterized protein LOC111007290 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1E1K7	1.9e-44	79.37	uncharacterized protein LOC111429947 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A5D3CK96	9.2e-44	85.00	DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of HG10008267 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	6.5e-26	59.50	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 80..111 e-value: 4.5E-12 score: 45.3
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 1..119
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008267.1	HG10008267.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071456	cellular response to hypoxia