HG10008255 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008255
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box protein PP2-B10-like
LocationChr10: 21274994 .. 21275257 (-)
RNA-Seq ExpressionHG10008255
SyntenyHG10008255
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAG

mRNA sequence

ATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAG

Coding sequence (CDS)

ATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAG

Protein sequence

MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
Homology
BLAST of HG10008255 vs. NCBI nr
Match: XP_022134922.1 (F-box protein PP2-B10-like isoform X2 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-22
Identity = 60/87 (68.97%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 1  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 60
          MEEET    E  +IA  SSLPEGVIA ILSLT P D CRSS VSR F+A AQSDI WDRF
Sbjct: 1  MEEETMTGTEGEEIADFSSLPEGVIANILSLTGPSDACRSSTVSRAFHAAAQSDIVWDRF 60

Query: 61 LPTDWNVLISPRKSVEQNVDPISSSKK 88
          LPTDW  LI  RK  + N+DPISSSKK
Sbjct: 61 LPTDWYDLICRRKPSDLNIDPISSSKK 87

BLAST of HG10008255 vs. NCBI nr
Match: XP_022134921.1 (F-box protein PP2-B10-like isoform X1 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-22
Identity = 60/87 (68.97%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 1   MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 60
           MEEET    E  +IA  SSLPEGVIA ILSLT P D CRSS VSR F+A AQSDI WDRF
Sbjct: 21  MEEETMTGTEGEEIADFSSLPEGVIANILSLTGPSDACRSSTVSRAFHAAAQSDIVWDRF 80

Query: 61  LPTDWNVLISPRKSVEQNVDPISSSKK 88
           LPTDW  LI  RK  + N+DPISSSKK
Sbjct: 81  LPTDWYDLICRRKPSDLNIDPISSSKK 107

BLAST of HG10008255 vs. NCBI nr
Match: XP_038878468.1 (F-box protein PP2-B10-like [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 3.6e-20
Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 1  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 60
          MEEE     E  +I+  SSLPEGV+A ILSLT+P D CRSSAVSR F+A AQSDI WD+ 
Sbjct: 2  MEEEKEKGTEGEEISDFSSLPEGVVAKILSLTTPSDACRSSAVSRTFHAAAQSDIVWDKL 61

Query: 61 LPTDWNVLISPRKSVEQNVDPISSSKK 88
          LPTDW +LIS RK    N DPISS KK
Sbjct: 62 LPTDWKLLISRRKPSNLNFDPISSPKK 88

BLAST of HG10008255 vs. NCBI nr
Match: XP_038878692.1 (F-box protein PP2-B10-like [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 7.9e-20
Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 1  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 60
          MEEE   +  + +I+  SSLPEGV+A ILSLT+P DVCRSSAV R F A +QSDI WDRF
Sbjct: 1  MEEEEKGKATEEEISDFSSLPEGVVAKILSLTTPPDVCRSSAVCRTFVAASQSDIVWDRF 60

Query: 61 LPTDWNVLISPRKSVEQNVDPISSSKK 88
          LPTDW +LIS RK    N DPISS KK
Sbjct: 61 LPTDWELLISRRKPSNLNFDPISSPKK 87

BLAST of HG10008255 vs. NCBI nr
Match: XP_023001976.1 (F-box protein PP2-B10-like [Cucurbita maxima])

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-19
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 2  EEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFL 61
          E+ET    EDG+IA  SSLPEG IA ILSLT+P D CRSSAVSR F+A AQSDI W+RFL
Sbjct: 3  EDETRTGTEDGEIADFSSLPEGAIANILSLTTPSDACRSSAVSRIFHAAAQSDIVWERFL 62

Query: 62 PTDWNVLISPRKSVEQNVDPISSSKK 88
          PT+W  LIS RK  + N DP + S K
Sbjct: 63 PTNWEDLISRRKPNDLNFDPTTWSTK 88

BLAST of HG10008255 vs. ExPASy Swiss-Prot
Match: Q9FV02 (F-box protein SKIP3 OS=Arabidopsis thaliana OX=3702 GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 17 LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK 74
          L SLPEG I+ I+S TSP D C ++AVS+ F +  +SDI W++FLPTD+  LI+P +
Sbjct: 24 LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSR 80

BLAST of HG10008255 vs. ExPASy Swiss-Prot
Match: Q9ZVQ6 (F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-09
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 8  QREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNV 67
          +R   + +   S PE  I+YI+S T+P D C ++ VS+ F +T +SDI W++FLP D+  
Sbjct: 5  RRVKSESSPFDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYES 64

Query: 68 LISPRK 74
          LI P +
Sbjct: 65 LIPPSR 70

BLAST of HG10008255 vs. ExPASy Swiss-Prot
Match: Q949S5 (F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 17 LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDW 66
          +++LPE  IA ILSLT+P DVCR SAVS  F + A SD  W+ FLP D+
Sbjct: 1  MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADF 49

BLAST of HG10008255 vs. ExPASy Swiss-Prot
Match: Q9FLU7 (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana OX=3702 GN=PP2B12 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 20 LPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI 70
          LPE  IA ++S TSPFD CR SAVS+   + A S+  W+RFLP+D+ + I
Sbjct: 6  LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYI 55

BLAST of HG10008255 vs. ExPASy Swiss-Prot
Match: Q9ZVR5 (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-08
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 19  SLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK 74
           +LPE  I+ I+S TSP D C +++VS+ F +   SD  WD+FLP+D++ L+ P +
Sbjct: 49  NLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSR 103

BLAST of HG10008255 vs. ExPASy TrEMBL
Match: A0A6J1BZ47 (F-box protein PP2-B10-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007056 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 60/87 (68.97%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 1   MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 60
           MEEET    E  +IA  SSLPEGVIA ILSLT P D CRSS VSR F+A AQSDI WDRF
Sbjct: 21  MEEETMTGTEGEEIADFSSLPEGVIANILSLTGPSDACRSSTVSRAFHAAAQSDIVWDRF 80

Query: 61  LPTDWNVLISPRKSVEQNVDPISSSKK 88
           LPTDW  LI  RK  + N+DPISSSKK
Sbjct: 81  LPTDWYDLICRRKPSDLNIDPISSSKK 107

BLAST of HG10008255 vs. ExPASy TrEMBL
Match: A0A6J1C117 (F-box protein PP2-B10-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007056 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 60/87 (68.97%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 1  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 60
          MEEET    E  +IA  SSLPEGVIA ILSLT P D CRSS VSR F+A AQSDI WDRF
Sbjct: 1  MEEETMTGTEGEEIADFSSLPEGVIANILSLTGPSDACRSSTVSRAFHAAAQSDIVWDRF 60

Query: 61 LPTDWNVLISPRKSVEQNVDPISSSKK 88
          LPTDW  LI  RK  + N+DPISSSKK
Sbjct: 61 LPTDWYDLICRRKPSDLNIDPISSSKK 87

BLAST of HG10008255 vs. ExPASy TrEMBL
Match: A0A6J1KK45 (F-box protein PP2-B10-like OS=Cucurbita maxima OX=3661 GN=LOC111495993 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.0e-20
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 2  EEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFL 61
          E+ET    EDG+IA  SSLPEG IA ILSLT+P D CRSSAVSR F+A AQSDI W+RFL
Sbjct: 3  EDETRTGTEDGEIADFSSLPEGAIANILSLTTPSDACRSSAVSRIFHAAAQSDIVWERFL 62

Query: 62 PTDWNVLISPRKSVEQNVDPISSSKK 88
          PT+W  LIS RK  + N DP + S K
Sbjct: 63 PTNWEDLISRRKPNDLNFDPTTWSTK 88

BLAST of HG10008255 vs. ExPASy TrEMBL
Match: A0A6J1ES31 (F-box protein PP2-B10-like OS=Cucurbita moschata OX=3662 GN=LOC111436000 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 2  EEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFL 61
          ++ET    EDG+IA  SSLPEG IA ILSLT+P D CRSSAVSR F+A A SDI W+RFL
Sbjct: 3  KDETRTGTEDGEIADFSSLPEGAIANILSLTTPSDACRSSAVSRTFHAAALSDIVWERFL 62

Query: 62 PTDWNVLISPRKSVEQNVDPISSSKK 88
          PTDW  LIS RK  + N DPI+ S K
Sbjct: 63 PTDWEDLISRRKPNDLNFDPITWSTK 88

BLAST of HG10008255 vs. ExPASy TrEMBL
Match: A0A0A0LUI2 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G421930 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.5e-19
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 1  MEEETWMQR--EDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWD 60
          ME+E+ M+   ED +I  LS LPEGVIA +LS T+P D C ++AVSR FNA AQSD  WD
Sbjct: 6  MEQESRMESDGEDQEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWD 65

Query: 61 RFLPTDWNVLISPRKSVEQNVDPISSSKK 88
          RFLP DW+VLIS RKS     DP+SSSKK
Sbjct: 66 RFLPPDWDVLISYRKS----FDPLSSSKK 90

BLAST of HG10008255 vs. TAIR 10
Match: AT2G02360.1 (phloem protein 2-B10 )

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-10
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 8  QREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNV 67
          +R   + +   S PE  I+YI+S T+P D C ++ VS+ F +T +SDI W++FLP D+  
Sbjct: 5  RRVKSESSPFDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYES 64

Query: 68 LISPRK 74
          LI P +
Sbjct: 65 LIPPSR 70

BLAST of HG10008255 vs. TAIR 10
Match: AT1G80110.1 (phloem protein 2-B11 )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 17 LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDW 66
          +++LPE  IA ILSLT+P DVCR SAVS  F + A SD  W+ FLP D+
Sbjct: 1  MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADF 49

BLAST of HG10008255 vs. TAIR 10
Match: AT5G24560.1 (phloem protein 2-B12 )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 20 LPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI 70
          LPE  IA ++S TSPFD CR SAVS+   + A S+  W+RFLP+D+ + I
Sbjct: 6  LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYI 55

BLAST of HG10008255 vs. TAIR 10
Match: AT2G02250.1 (phloem protein 2-B2 )

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-09
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 19  SLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK 74
           +LPE  I+ I+S TSP D C +++VS+ F +   SD  WD+FLP+D++ L+ P +
Sbjct: 49  NLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSR 103

BLAST of HG10008255 vs. TAIR 10
Match: AT2G02340.1 (phloem protein 2-B8 )

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 14 IAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK 73
          +A L  LPE  ++ I+S TSP D C  ++VS+ F +  +SDI W++F+P ++  LIS  +
Sbjct: 33 VAELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSR 92

Query: 74 S 75
          +
Sbjct: 93 A 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022134922.15.0e-2268.97F-box protein PP2-B10-like isoform X2 [Momordica charantia][more]
XP_022134921.15.0e-2268.97F-box protein PP2-B10-like isoform X1 [Momordica charantia][more]
XP_038878468.13.6e-2064.37F-box protein PP2-B10-like [Benincasa hispida][more]
XP_038878692.17.9e-2064.37F-box protein PP2-B10-like [Benincasa hispida][more]
XP_023001976.11.0e-1963.95F-box protein PP2-B10-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9FV024.1e-1152.63F-box protein SKIP3 OS=Arabidopsis thaliana OX=3702 GN=SKIP3 PE=1 SV=2[more]
Q9ZVQ62.9e-0940.91F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1[more]
Q949S52.5e-0857.14F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1[more]
Q9FLU72.5e-0852.00Putative F-box protein PP2-B12 OS=Arabidopsis thaliana OX=3702 GN=PP2B12 PE=4 SV... [more]
Q9ZVR57.2e-0843.64Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1BZ472.4e-2268.97F-box protein PP2-B10-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1C1172.4e-2268.97F-box protein PP2-B10-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1KK455.0e-2063.95F-box protein PP2-B10-like OS=Cucurbita maxima OX=3661 GN=LOC111495993 PE=4 SV=1[more]
A0A6J1ES311.1e-1963.95F-box protein PP2-B10-like OS=Cucurbita moschata OX=3662 GN=LOC111436000 PE=4 SV... [more]
A0A0A0LUI29.5e-1961.80F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G421930 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT2G02360.12.1e-1040.91phloem protein 2-B10 [more]
AT1G80110.11.8e-0957.14phloem protein 2-B11 [more]
AT5G24560.11.8e-0952.00phloem protein 2-B12 [more]
AT2G02250.15.1e-0943.64phloem protein 2-B2 [more]
AT2G02340.11.5e-0839.34phloem protein 2-B8 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 16..60
e-value: 2.3E-5
score: 24.1
IPR001810F-box domainPROSITEPS50181FBOXcoord: 14..60
score: 9.788908
NoneNo IPR availableGENE3D1.20.1280.50coord: 4..80
e-value: 3.0E-8
score: 35.5
NoneNo IPR availablePANTHERPTHR32278FAMILY NOT NAMEDcoord: 10..86
NoneNo IPR availablePANTHERPTHR32278:SF71SUBFAMILY NOT NAMEDcoord: 10..86
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 10..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008255.1HG10008255.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding