HG10008253 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008253
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	F-box protein PP2-B10-like
Location	Chr10: 21270649 .. 21271064 (-)
RNA-Seq Expression	HG10008253
Synteny	HG10008253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACAGAGGACGAAGAAATTGGCGATTTATCTTTTATGCCCGAAGGAGTAATAGCCAACCTCTTATCTCTCACAAGTCCAATCGATGCCTGCAGGTCGGCGGCGGTTTCCCCAATATTTAATGCGGCGGCGCAGTCGGATTTTGTATGGGACAGGTTCCTGCCTACCGATTGGGAAGTTTTGATTTCTCAGAGGAAATCTGATGATCACAATGTTGATCCAATTTCCACTTCGAAGAAGGAGATCTTTTTCTCCCTTTGCAACAGCCCGGTGCTAATTGACGACGGCAACAAGGTAAGCTTTCCGATTCCCCCGATTTCTTTAAATTGAAGGTGGCCGGAGTTGGATCAGTGGTCGGCAAACACAACTCTGACTCCACCCCTGCCATCATCGGAAGTTGCCTTCCGAATTGA

mRNA sequence

ATGGAAACAGAGGACGAAGAAATTGGCGATTTATCTTTTATGCCCGAAGGAGTAATAGCCAACCTCTTATCTCTCACAAGTCCAATCGATGCCTGCAGGTCGGCGGCGGTTTCCCCAATATTTAATGCGGCGGCGCAGTCGGATTTTGTATGGGACAGGTTCCTGCCTACCGATTGGGAAGTTTTGATTTCTCAGAGGAAATCTGATGATCACAATGTTGATCCAATTTCCACTTCGAAGAAGGAGATCTTTTTCTCCCTTTGCAACAGCCCGGTGCTAATTGACGACGGCAACAAGGTGGCCGGAGTTGGATCAGTGGTCGGCAAACACAACTCTGACTCCACCCCTGCCATCATCGGAAGTTGCCTTCCGAATTGA

Coding sequence (CDS)

ATGGAAACAGAGGACGAAGAAATTGGCGATTTATCTTTTATGCCCGAAGGAGTAATAGCCAACCTCTTATCTCTCACAAGTCCAATCGATGCCTGCAGGTCGGCGGCGGTTTCCCCAATATTTAATGCGGCGGCGCAGTCGGATTTTGTATGGGACAGGTTCCTGCCTACCGATTGGGAAGTTTTGATTTCTCAGAGGAAATCTGATGATCACAATGTTGATCCAATTTCCACTTCGAAGAAGGAGATCTTTTTCTCCCTTTGCAACAGCCCGGTGCTAATTGACGACGGCAACAAGGTGGCCGGAGTTGGATCAGTGGTCGGCAAACACAACTCTGACTCCACCCCTGCCATCATCGGAAGTTGCCTTCCGAATTGA

Protein sequence

METEDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGKHNSDSTPAIIGSCLPN

Homology

[Close]

BLAST of HG10008253 vs. NCBI nr
Match: XP_038880073.1 (F-box protein PP2-B10-like [Benincasa hispida])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   METEDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWE 60
           METE EE GDLSFMPEGVIANLLS T+PIDAC  +AVS IFNAAAQSDFVWDRFLPTD +
Sbjct: 7   METEREENGDLSFMPEGVIANLLSFTTPIDACSLSAVSRIFNAAAQSDFVWDRFLPTDCD 66

Query: 61  VLISQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           VLI+QRKS    VDPIS+SKKEIFFSLCN+PVLIDDGNK   +    GK
Sbjct: 67  VLIAQRKS----VDPISSSKKEIFFSLCNNPVLIDDGNKSLSLEKWSGK 111

[Close]

BLAST of HG10008253 vs. NCBI nr
Match: XP_011656739.1 (F-box protein PP2-B10 [Cucumis sativus] >KGN65433.1 hypothetical protein Csa_020131 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 4   EDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLI 63
           ED+EIGDLSF+PEGVIAN+LS T+PIDAC +AAVS +FNAAAQSDFVWDRFLP DW+VLI
Sbjct: 17  EDQEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 76

Query: 64  SQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           S RKS     DP+S+SKK+IFFSLCN+PVLIDD NK   +    GK
Sbjct: 77  SYRKS----FDPLSSSKKDIFFSLCNNPVLIDDRNKSLSLDRQSGK 118

[Close]

BLAST of HG10008253 vs. NCBI nr
Match: KAA0058299.1 (F-box protein PP2-B10-like [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 4   EDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLI 63
           EDEEIGDLSF+PEGVIAN+LS T+PIDAC +AAVS +FNAAAQSDFVWDRFLP DW+VLI
Sbjct: 6   EDEEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 65

Query: 64  SQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           S RKS     DP+S+SKK+IFFSLCN+PV IDD NK   +    GK
Sbjct: 66  SHRKS----FDPLSSSKKDIFFSLCNNPVPIDDRNKSLSLDRQSGK 107

[Close]

BLAST of HG10008253 vs. NCBI nr
Match: XP_008453628.1 (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 4   EDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLI 63
           EDEEIGDLSF+PEGVIAN+LS T+PIDAC +AAVS +FNAAAQSDFVWDRFLP DW+VLI
Sbjct: 6   EDEEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 65

Query: 64  SQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           S RKS     DP+S+SKK+IFFSLCN+PV IDD NK   +    GK
Sbjct: 66  SHRKS----FDPLSSSKKDIFFSLCNNPVPIDDRNKSLSLDRQSGK 107

[Close]

BLAST of HG10008253 vs. NCBI nr
Match: TYK11855.1 (F-box protein PP2-B10-like [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 4   EDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLI 63
           EDEEIGDLSF+PEGVIAN+LS T+PIDAC +AAVS +FNAAAQSDFVWDRFLP DW+VLI
Sbjct: 6   EDEEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 65

Query: 64  SQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           S RKS     DP+S+SKK+IFFSLCN+PV IDD NK   +    GK
Sbjct: 66  SHRKS----FDPLSSSKKDIFFSLCNNPVPIDDRNKSLSLDRQSGK 107

[Close]

BLAST of HG10008253 vs. ExPASy Swiss-Prot
Match: Q9FV02 (F-box protein SKIP3 OS=Arabidopsis thaliana OX=3702 GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 9.1e-20
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 11  LSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDD 70
           L  +PEG I+N++S TSP DAC +AAVS IF +A +SD VW++FLPTD+E LI+  +   
Sbjct: 24  LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSR--- 83

Query: 71  HNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
                + +SKKE++FSLCN P+LI+DG     +    GK
Sbjct: 84  -----VFSSKKELYFSLCNDPLLIEDGKMSLWLEKASGK 114

[Close]

BLAST of HG10008253 vs. ExPASy Swiss-Prot
Match: Q3E6P4 (F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-17
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 14  MPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDDHNV 73
           +PE  I+N++S TSP DAC +A+VS  F +A  SD VWD+FLP ++E L+S+ +      
Sbjct: 64  LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSR------ 123

Query: 74  DPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
             +  SKKE++F+LC++PVLI+DG K   +    GK
Sbjct: 124 --VFASKKELYFALCHNPVLIEDGKKSFWLEKASGK 151

[Close]

BLAST of HG10008253 vs. ExPASy Swiss-Prot
Match: Q9ZVR5 (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-16
Identity = 38/86 (44.19%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 14  MPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDDHNV 73
           +PE  I+N++S TSP DAC +A+VS  F +A  SD VWD+FLP+D+  L+   +      
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSR------ 109

Query: 74  DPISTSKKEIFFSLCNSPVLIDDGNK 100
             + +SKKE++F++C++PVL++DG K
Sbjct: 110 --VFSSKKELYFAICDNPVLVEDGGK 127

[Close]

BLAST of HG10008253 vs. ExPASy Swiss-Prot
Match: O80494 (F-box protein PP2-B15 OS=Arabidopsis thaliana OX=3702 GN=PP2B15 PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 14  MPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDDHNV 73
           +PE  +A +LS T+P D   SAAVS +F  A  SDFVW++FLPTD+  +IS R +D H  
Sbjct: 3   LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVIS-RSTDPHR- 62

Query: 74  DPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
             I +SKKE++  LC S +LID+G K+  +  + GK
Sbjct: 63  --IFSSKKELYRCLCES-ILIDNGRKIFKIEKLSGK 93

[Close]

BLAST of HG10008253 vs. ExPASy Swiss-Prot
Match: Q9C7K0 (F-box protein VBF OS=Arabidopsis thaliana OX=3702 GN=VBF PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 11  LSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDD 70
           +  +PE  IAN+L+ TSP DA  S+ VS +F  A  SDFVW++FLP+D++ LISQ  S D
Sbjct: 1   MMMLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQ--STD 60

Query: 71  HNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           H+ +   +SKKEI+  LC+S +LID+  K+  +    GK
Sbjct: 61  HHWN--ISSKKEIYRCLCDS-LLIDNARKLFKINKFSGK 94

[Close]

BLAST of HG10008253 vs. ExPASy TrEMBL
Match: A0A0A0LUI2 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G421930 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.1e-34
Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 4   EDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLI 63
           ED+EIGDLSF+PEGVIAN+LS T+PIDAC +AAVS +FNAAAQSDFVWDRFLP DW+VLI
Sbjct: 17  EDQEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 76

Query: 64  SQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           S RKS     DP+S+SKK+IFFSLCN+PVLIDD NK   +    GK
Sbjct: 77  SYRKS----FDPLSSSKKDIFFSLCNNPVLIDDRNKSLSLDRQSGK 118

[Close]

BLAST of HG10008253 vs. ExPASy TrEMBL
Match: A0A5D3CJZ0 (F-box protein PP2-B10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00770 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 4   EDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLI 63
           EDEEIGDLSF+PEGVIAN+LS T+PIDAC +AAVS +FNAAAQSDFVWDRFLP DW+VLI
Sbjct: 6   EDEEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 65

Query: 64  SQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           S RKS     DP+S+SKK+IFFSLCN+PV IDD NK   +    GK
Sbjct: 66  SHRKS----FDPLSSSKKDIFFSLCNNPVPIDDRNKSLSLDRQSGK 107

[Close]

BLAST of HG10008253 vs. ExPASy TrEMBL
Match: A0A5A7UXP9 (F-box protein PP2-B10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006330 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 4   EDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLI 63
           EDEEIGDLSF+PEGVIAN+LS T+PIDAC +AAVS +FNAAAQSDFVWDRFLP DW+VLI
Sbjct: 6   EDEEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 65

Query: 64  SQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           S RKS     DP+S+SKK+IFFSLCN+PV IDD NK   +    GK
Sbjct: 66  SHRKS----FDPLSSSKKDIFFSLCNNPVPIDDRNKSLSLDRQSGK 107

[Close]

BLAST of HG10008253 vs. ExPASy TrEMBL
Match: A0A1S3BXH9 (F-box protein PP2-B10-like OS=Cucumis melo OX=3656 GN=LOC103494284 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 4   EDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLI 63
           EDEEIGDLSF+PEGVIAN+LS T+PIDAC +AAVS +FNAAAQSDFVWDRFLP DW+VLI
Sbjct: 6   EDEEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 65

Query: 64  SQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           S RKS     DP+S+SKK+IFFSLCN+PV IDD NK   +    GK
Sbjct: 66  SHRKS----FDPLSSSKKDIFFSLCNNPVPIDDRNKSLSLDRQSGK 107

[Close]

BLAST of HG10008253 vs. ExPASy TrEMBL
Match: A0A6J1BZ47 (F-box protein PP2-B10-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007056 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-31
Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 3   TEDEEIGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVL 62
           TE EEI D S +PEGVIAN+LSLT P DACRS+ VS  F+AAAQSD VWDRFLPTDW  L
Sbjct: 29  TEGEEIADFSSLPEGVIANILSLTGPSDACRSSTVSRAFHAAAQSDIVWDRFLPTDWYDL 88

Query: 63  ISQRKSDDHNVDPISTSKKEIFFSLCNSPVLIDDGNKVA 102
           I +RK  D N+DPIS+SKKEIFFSLC++P+L DDG K++
Sbjct: 89  ICRRKPSDLNIDPISSSKKEIFFSLCDNPLLTDDGKKLS 127

[Close]

BLAST of HG10008253 vs. TAIR 10
Match: AT2G02240.1 (F-box family protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-18
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 14  MPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDDHNV 73
           +PE  I+N++S TSP DAC +A+VS  F +A  SD VWD+FLP ++E L+S+ +      
Sbjct: 64  LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSR------ 123

Query: 74  DPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
             +  SKKE++F+LC++PVLI+DG K   +    GK
Sbjct: 124 --VFASKKELYFALCHNPVLIEDGKKSFWLEKASGK 151

[Close]

BLAST of HG10008253 vs. TAIR 10
Match: AT2G02250.1 (phloem protein 2-B2 )

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-17
Identity = 38/86 (44.19%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 14  MPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDDHNV 73
           +PE  I+N++S TSP DAC +A+VS  F +A  SD VWD+FLP+D+  L+   +      
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSR------ 109

Query: 74  DPISTSKKEIFFSLCNSPVLIDDGNK 100
             + +SKKE++F++C++PVL++DG K
Sbjct: 110 --VFSSKKELYFAICDNPVLVEDGGK 127

[Close]

BLAST of HG10008253 vs. TAIR 10
Match: AT1G09155.1 (phloem protein 2-B15 )

HSP 1 Score: 84.0 bits (206), Expect = 9.6e-17
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 14  MPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDDHNV 73
           +PE  +A +LS T+P D   SAAVS +F  A  SDFVW++FLPTD+  +IS R +D H  
Sbjct: 3   LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVIS-RSTDPHR- 62

Query: 74  DPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
             I +SKKE++  LC S +LID+G K+  +  + GK
Sbjct: 63  --IFSSKKELYRCLCES-ILIDNGRKIFKIEKLSGK 93

[Close]

BLAST of HG10008253 vs. TAIR 10
Match: AT1G56250.1 (phloem protein 2-B14 )

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 11  LSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRKSDD 70
           +  +PE  IAN+L+ TSP DA  S+ VS +F  A  SDFVW++FLP+D++ LISQ  S D
Sbjct: 1   MMMLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQ--STD 60

Query: 71  HNVDPISTSKKEIFFSLCNSPVLIDDGNKVAGVGSVVGK 110
           H+ +   +SKKEI+  LC+S +LID+  K+  +    GK
Sbjct: 61  HHWN--ISSKKEIYRCLCDS-LLIDNARKLFKINKFSGK 94

[Close]

BLAST of HG10008253 vs. TAIR 10
Match: AT2G02340.1 (phloem protein 2-B8 )

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-16
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 8   IGDLSFMPEGVIANLLSLTSPIDACRSAAVSPIFNAAAQSDFVWDRFLPTDWEVLISQRK 67
           + +L  +PE  ++ ++S TSP DAC  A+VS  F +A +SD VW++F+P ++E LISQ +
Sbjct: 33  VAELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSR 92

Query: 68  SDDHNVDPISTSKKEIFFSLCNSPVLIDDGNK 100
           +          SKKE++F+LC+  VLIDDG K
Sbjct: 93  AFKF------LSKKELYFALCDKSVLIDDGKK 118

The following BLAST results are available for this feature:

BLAST of HG10008253 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880073.1	1.1e-35	77.06	F-box protein PP2-B10-like [Benincasa hispida]	[more]
XP_011656739.1	1.1e-33	71.70	F-box protein PP2-B10 [Cucumis sativus] >KGN65433.1 hypothetical protein Csa_020...	[more]
KAA0058299.1	2.4e-33	71.70	F-box protein PP2-B10-like [Cucumis melo var. makuwa]	[more]
XP_008453628.1	2.4e-33	71.70	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
TYK11855.1	2.4e-33	71.70	F-box protein PP2-B10-like [Cucumis melo var. makuwa]	[more]

BLAST of HG10008253 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FV02	9.1e-20	48.48	F-box protein SKIP3 OS=Arabidopsis thaliana OX=3702 GN=SKIP3 PE=1 SV=2	[more]
Q3E6P4	4.2e-17	44.79	F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1	[more]
Q9ZVR5	3.6e-16	44.19	Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2	[more]
O80494	1.4e-15	46.88	F-box protein PP2-B15 OS=Arabidopsis thaliana OX=3702 GN=PP2B15 PE=2 SV=2	[more]
Q9C7K0	2.3e-15	46.46	F-box protein VBF OS=Arabidopsis thaliana OX=3702 GN=VBF PE=1 SV=1	[more]

BLAST of HG10008253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUI2	5.1e-34	71.70	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G421930 PE=4 ...	[more]
A0A5D3CJZ0	1.1e-33	71.70	F-box protein PP2-B10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7UXP9	1.1e-33	71.70	F-box protein PP2-B10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3BXH9	1.1e-33	71.70	F-box protein PP2-B10-like OS=Cucumis melo OX=3656 GN=LOC103494284 PE=4 SV=1	[more]
A0A6J1BZ47	2.4e-31	69.70	F-box protein PP2-B10-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]

BLAST of HG10008253 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02240.1	3.0e-18	44.79	F-box family protein	[more]
AT2G02250.1	2.5e-17	44.19	phloem protein 2-B2	[more]
AT1G09155.1	9.6e-17	46.88	phloem protein 2-B15	[more]
AT1G56250.1	1.6e-16	46.46	phloem protein 2-B14	[more]
AT2G02340.1	3.7e-16	43.48	phloem protein 2-B8	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32278:SF71	SUBFAMILY NOT NAMED	coord: 4..103
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 4..103
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 4..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008253.1	HG10008253.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding