HG10008217 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008217
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transcription factor IBH1-like 1
Location	Chr10: 20948508 .. 20949065 (+)
RNA-Seq Expression	HG10008217
Synteny	HG10008217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCAATCCCAGTTCGTTAAAACGAGAATTTTTGAAGAAATGGATGATGGGTCTTCAAATATACACAACGTCAAACGAAAACATGACGGTCACCGAGAGAAAAAACGCCATTAAATTATCTGCAGATATAGCTTTAGCCTCCTCCCGAAACTGCGCCACACGGTGGAGCCGAGCAGTCATCGCCAGCTCCTCCGTCGATAACCGAAACCGCCTGGTGGCCGATGGCGTACTAGGCCGAGCCGTATGCGAAAGGATGAAGCAAATCAGCAATTCCAAAATCACGCGAAGTTCATGGAGTAGTAGGAAGATTCTGAAAAGAAGCCGCCGTGTGCGGCGGAGGAATAAATGTATGAAGGCGGTGGCGGCGGAGTCGGTTGCAAAAAGATTTGTGCAAAAAAGAACGAAAGTGCTACGTGGTTTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAAGTTGATGTAATGAGGTTTCTTGCAACTGCATACAATCCATCATCATCATCATCATGA

mRNA sequence

ATGCGCAATCCCAGTTCGTTAAAACGAGAATTTTTGAAGAAATGGATGATGGGTCTTCAAATATACACAACGTCAAACGAAAACATGACGGTCACCGAGAGAAAAAACGCCATTAAATTATCTGCAGATATAGCTTTAGCCTCCTCCCGAAACTGCGCCACACGGTGGAGCCGAGCAGTCATCGCCAGCTCCTCCGTCGATAACCGAAACCGCCTGGTGGCCGATGGCGTACTAGGCCGAGCCGTATGCGAAAGGATGAAGCAAATCAGCAATTCCAAAATCACGCGAAGTTCATGGAGTAGTAGGAAGATTCTGAAAAGAAGCCGCCGTGTGCGGCGGAGGAATAAATGTATGAAGGCGGTGGCGGCGGAGTCGGTTGCAAAAAGATTTGTGCAAAAAAGAACGAAAGTGCTACGTGGTTTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAAGTTGATGTAATGAGGTTTCTTGCAACTGCATACAATCCATCATCATCATCATCATGA

Coding sequence (CDS)

ATGCGCAATCCCAGTTCGTTAAAACGAGAATTTTTGAAGAAATGGATGATGGGTCTTCAAATATACACAACGTCAAACGAAAACATGACGGTCACCGAGAGAAAAAACGCCATTAAATTATCTGCAGATATAGCTTTAGCCTCCTCCCGAAACTGCGCCACACGGTGGAGCCGAGCAGTCATCGCCAGCTCCTCCGTCGATAACCGAAACCGCCTGGTGGCCGATGGCGTACTAGGCCGAGCCGTATGCGAAAGGATGAAGCAAATCAGCAATTCCAAAATCACGCGAAGTTCATGGAGTAGTAGGAAGATTCTGAAAAGAAGCCGCCGTGTGCGGCGGAGGAATAAATGTATGAAGGCGGTGGCGGCGGAGTCGGTTGCAAAAAGATTTGTGCAAAAAAGAACGAAAGTGCTACGTGGTTTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAAGTTGATGTAATGAGGTTTCTTGCAACTGCATACAATCCATCATCATCATCATCATGA

Protein sequence

MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKAVAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSSS

Homology

[Close]

BLAST of HG10008217 vs. NCBI nr
Match: XP_038879866.1 (transcription factor IBH1-like 1 [Benincasa hispida])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 172/187 (91.98%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTT-SNENMTVTERKNAIKLSADIALASSRNCATRWSRA 60
           MRNPSSLKREFLKKWM GLQIYTT SNENMTV ERK AIKLSADIALASSRNCATRWSRA
Sbjct: 1   MRNPSSLKREFLKKWMTGLQIYTTSSNENMTVIERKTAIKLSADIALASSRNCATRWSRA 60

Query: 61  VIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV-RRRNKCM 120
           VIASSSVDNR+R VADGVLGRAVCER+KQISNSK+TRSSWSS  ILKRSRRV RRRNKCM
Sbjct: 61  VIASSSVDNRSRRVADGVLGRAVCERVKQISNSKMTRSSWSSGMILKRSRRVRRRRNKCM 120

Query: 121 KAVAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAY 180
           KA+AAESVAKR V KRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMR LATAY
Sbjct: 121 KAMAAESVAKRLVLKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAY 180

Query: 181 NPSSSSS 186
           NPSSSSS
Sbjct: 181 NPSSSSS 187

[Close]

BLAST of HG10008217 vs. NCBI nr
Match: XP_008443801.1 (PREDICTED: uncharacterized protein LOC103487305 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-73
Identity = 157/188 (83.51%), Postives = 172/188 (91.49%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           M+NP+SLK+EFLKKWMMGLQIYTT+NENMTV ERK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNK 120
           IA SSVDNR+ LVA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    RRRNK
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMKAVAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT 180
           CM AV   ++A+R VQ+RTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLA+
Sbjct: 121 CMAAV---TIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAS 180

Query: 181 AYNPSSSS 185
           AYNPSSSS
Sbjct: 181 AYNPSSSS 185

[Close]

BLAST of HG10008217 vs. NCBI nr
Match: XP_004149880.1 (transcription factor IBH1-like 1 [Cucumis sativus] >KGN65277.1 hypothetical protein Csa_020046 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 3.5e-73
Identity = 157/188 (83.51%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           M+N +SLK+EF KKWMMGLQIYTT+NENMTVTERK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNK 120
           IA SSVDNR+  VA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    RRRNK
Sbjct: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMKAVAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT 180
           CM AV   ++A+R VQKRTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLAT
Sbjct: 121 CMAAV---TIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAT 180

Query: 181 AYNPSSSS 185
           AYNPSSSS
Sbjct: 181 AYNPSSSS 185

[Close]

BLAST of HG10008217 vs. NCBI nr
Match: XP_022988593.1 (transcription factor IBH1-like 1 [Cucurbita maxima])

HSP 1 Score: 255.4 bits (651), Expect = 3.8e-64
Identity = 141/176 (80.11%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           MRNPSSLKR+FLKKW+MGLQIYTT+N NMTV +RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA 120
           IA +SV + + LVA+G+LGRAVCER+KQ S+SKITRSSWSS KILKRSRRV RR KC K 
Sbjct: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQ-SSSKITRSSWSSGKILKRSRRVGRRKKCRKP 120

Query: 121 VAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT 177
            AAE +A+R VQKRT+ LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMR LAT
Sbjct: 121 -AAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 174

[Close]

BLAST of HG10008217 vs. NCBI nr
Match: KAG7023415.1 (Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.4 bits (651), Expect = 3.8e-64
Identity = 142/176 (80.68%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKR+FLKKW MGLQIYTT+N NMTV +RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA 120
           IA +SV + + LVA+GVLGRAVCER+K+ S+SKITRSSWSSRKILKRSRRV RR KC K 
Sbjct: 69  IAGTSVHDGSFLVANGVLGRAVCERIKE-SSSKITRSSWSSRKILKRSRRVGRRKKCRKP 128

Query: 121 VAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT 177
            AAE +AKR VQKRT+ LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMR LAT
Sbjct: 129 -AAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 182

[Close]

BLAST of HG10008217 vs. ExPASy Swiss-Prot
Match: Q9M0B9 (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.4e-29
Identity = 80/178 (44.94%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  EFLKKW MGLQI+  S +N +V ERK AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA 120
           I  ++ ++ N LV   + G     + + + N K+ + +   RKI++RS+++ RR     +
Sbjct: 61  IEKTATED-NFLVRQMLSG----IKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSAS 120

Query: 121 VAAESVAKRFVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA 178
             A + AKR V++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Sbjct: 121 EEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDA 173

[Close]

BLAST of HG10008217 vs. ExPASy Swiss-Prot
Match: O80482 (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-04
Identity = 46/155 (29.68%), Postives = 72/155 (46.45%), Query Frame = 0


Query: 23  TTSNE--NMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGR 82
           TTSN   +  V+     I+ +AD  LA+S    TRWSRA++AS                 
Sbjct: 70  TTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILAS----------------- 129

Query: 83  AVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKAVAAESVAKRFVQKRTKVLRG 142
            V  ++K+   +K +  +  SRK L  + R++                  V+++ K+L  
Sbjct: 130 RVRAKLKKHRKAKKSTGNCKSRKGLTETNRIK---------------LPAVERKLKILGR 189

Query: 143 LVPGGEFMDEISLIEETLDYISALQAQVDVMRFLA 176
           LVPG   +   +L++E  DYI+AL+ QV  M  LA
Sbjct: 190 LVPGCRKVSVPNLLDEATDYIAALEMQVRAMEALA 192

[Close]

BLAST of HG10008217 vs. ExPASy TrEMBL
Match: A0A1S3B8V1 (uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.8e-74
Identity = 157/188 (83.51%), Postives = 172/188 (91.49%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           M+NP+SLK+EFLKKWMMGLQIYTT+NENMTV ERK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNK 120
           IA SSVDNR+ LVA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    RRRNK
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMKAVAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT 180
           CM AV   ++A+R VQ+RTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLA+
Sbjct: 121 CMAAV---TIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAS 180

Query: 181 AYNPSSSS 185
           AYNPSSSS
Sbjct: 181 AYNPSSSS 185

[Close]

BLAST of HG10008217 vs. ExPASy TrEMBL
Match: A0A0A0LWQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294080 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 157/188 (83.51%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           M+N +SLK+EF KKWMMGLQIYTT+NENMTVTERK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNK 120
           IA SSVDNR+  VA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    RRRNK
Sbjct: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMKAVAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT 180
           CM AV   ++A+R VQKRTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLAT
Sbjct: 121 CMAAV---TIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAT 180

Query: 181 AYNPSSSS 185
           AYNPSSSS
Sbjct: 181 AYNPSSSS 185

[Close]

BLAST of HG10008217 vs. ExPASy TrEMBL
Match: A0A6J1JMR3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.9e-64
Identity = 141/176 (80.11%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           MRNPSSLKR+FLKKW+MGLQIYTT+N NMTV +RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA 120
           IA +SV + + LVA+G+LGRAVCER+KQ S+SKITRSSWSS KILKRSRRV RR KC K 
Sbjct: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQ-SSSKITRSSWSSGKILKRSRRVGRRKKCRKP 120

Query: 121 VAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT 177
            AAE +A+R VQKRT+ LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMR LAT
Sbjct: 121 -AAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 174

[Close]

BLAST of HG10008217 vs. ExPASy TrEMBL
Match: A0A6J1E715 (transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111430013 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.9e-64
Identity = 142/176 (80.68%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKR+FLKKW MGLQIYTT+N NMTV +RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA 120
           IA +SV + + LVA+GVLGRAVCER+K+ S+SKITRSSWSSRKILKRSRRV RR KC K 
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKE-SSSKITRSSWSSRKILKRSRRVGRRKKCRKP 120

Query: 121 VAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT 177
            AAE +AKR VQKRT+ LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMR LAT
Sbjct: 121 -AAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 174

[Close]

BLAST of HG10008217 vs. ExPASy TrEMBL
Match: A0A6J1F0A2 (transcription factor IBH1-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441170 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.6e-62
Identity = 138/183 (75.41%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKREFLKKWMMGL+IYTTSN+NMTVT+RKNAIKLSADIALASSRNCATRWS+A+
Sbjct: 1   MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA 120
           IA++SVD+ +RLVAD +LGR +        N KITR  WSS KI+KRSRRV+R  +  K 
Sbjct: 61  IAATSVDDGSRLVADVLLGRTI--------NPKITRIMWSSGKIVKRSRRVQRMRRKCKK 120

Query: 121 VAAESVAKRFVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNP 180
            AAE +AK+ V+KR KVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMR LATAY  
Sbjct: 121 PAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIA 175

Query: 181 SSS 184
           SSS
Sbjct: 181 SSS 175

[Close]

BLAST of HG10008217 vs. TAIR 10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-30
Identity = 80/178 (44.94%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  EFLKKW MGLQI+  S +N +V ERK AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA 120
           I  ++ ++ N LV   + G     + + + N K+ + +   RKI++RS+++ RR     +
Sbjct: 61  IEKTATED-NFLVRQMLSG----IKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSAS 120

Query: 121 VAAESVAKRFVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA 178
             A + AKR V++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Sbjct: 121 EEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDA 173

[Close]

BLAST of HG10008217 vs. TAIR 10
Match: AT4G30410.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-30
Identity = 80/178 (44.94%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  EFLKKW MGLQI+  S +N +V ERK AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA 120
           I  ++ ++ N LV   + G     + + + N K+ + +   RKI++RS+++ RR     +
Sbjct: 61  IEKTATED-NFLVRQMLSG----IKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSAS 120

Query: 121 VAAESVAKRFVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA 178
             A + AKR V++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Sbjct: 121 EEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDA 173

[Close]

BLAST of HG10008217 vs. TAIR 10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-22
Identity = 73/178 (41.01%), Postives = 107/178 (60.11%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIYTTSNEN-MTVTERKNAIKLSADIALASSRNCATRWSRA 60
           M   + +K+EF+KKW+  L +  +S E+ + VTERKNAI+LS+D+A+A++RN +T WSRA
Sbjct: 2   MNTYNMVKQEFIKKWINTLHMLDSSIEHPLNVTERKNAIRLSSDLAMAAARNGSTVWSRA 61

Query: 61  VIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKC-M 120
           +I+ S     N+ +A                           R+ILK++R  R +N+C +
Sbjct: 62  LISRSGNKTANKPMA---------------------------RRILKKARN-RMKNRCNI 121

Query: 121 KAVAAESVAKRFVQKRTKVLRGLVPGGEFMDEIS-LIEETLDYISALQAQVDVMRFLA 176
                   AK +V+KRT +L+ LVPGGE +D+   LI ETLDYI  L+AQVDVMR +A
Sbjct: 122 LRRNGNFTAKTWVRKRTDLLKSLVPGGELIDDKDYLIRETLDYIVYLRAQVDVMRTVA 151

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BLAST of HG10008217 vs. TAIR 10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-05
Identity = 46/155 (29.68%), Postives = 72/155 (46.45%), Query Frame = 0


Query: 23  TTSNE--NMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGR 82
           TTSN   +  V+     I+ +AD  LA+S    TRWSRA++AS                 
Sbjct: 70  TTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILAS----------------- 129

Query: 83  AVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKAVAAESVAKRFVQKRTKVLRG 142
            V  ++K+   +K +  +  SRK L  + R++                  V+++ K+L  
Sbjct: 130 RVRAKLKKHRKAKKSTGNCKSRKGLTETNRIK---------------LPAVERKLKILGR 189

Query: 143 LVPGGEFMDEISLIEETLDYISALQAQVDVMRFLA 176
           LVPG   +   +L++E  DYI+AL+ QV  M  LA
Sbjct: 190 LVPGCRKVSVPNLLDEATDYIAALEMQVRAMEALA 192

The following BLAST results are available for this feature:

BLAST of HG10008217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879866.1	1.1e-79	91.98	transcription factor IBH1-like 1 [Benincasa hispida]	[more]
XP_008443801.1	1.2e-73	83.51	PREDICTED: uncharacterized protein LOC103487305 [Cucumis melo]	[more]
XP_004149880.1	3.5e-73	83.51	transcription factor IBH1-like 1 [Cucumis sativus] >KGN65277.1 hypothetical prot...	[more]
XP_022988593.1	3.8e-64	80.11	transcription factor IBH1-like 1 [Cucurbita maxima]	[more]
KAG7023415.1	3.8e-64	80.68	Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of HG10008217 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B9	5.4e-29	44.94	Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV...	[more]
O80482	3.5e-04	29.68	Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=...	[more]

BLAST of HG10008217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8V1	5.8e-74	83.51	uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=...	[more]
A0A0A0LWQ3	1.7e-73	83.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294080 PE=4 SV=1	[more]
A0A6J1JMR3	1.9e-64	80.11	transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=...	[more]
A0A6J1E715	1.9e-64	80.68	transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111430013 P...	[more]
A0A6J1F0A2	6.6e-62	75.41	transcription factor IBH1-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of HG10008217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30410.2	3.9e-30	44.94	sequence-specific DNA binding transcription factors	[more]
AT4G30410.1	3.9e-30	44.94	sequence-specific DNA binding transcription factors	[more]
AT5G57780.1	8.6e-22	41.01	EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arab...	[more]
AT1G09250.1	2.5e-05	29.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 5..177
None	No IPR available	PANTHER	PTHR33124:SF5	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 5..177
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 123..175 e-value: 1.02298E-11 score: 55.7064

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008217.1	HG10008217.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding