HG10008216 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008216
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr10: 20920536 .. 20924564 (+)
RNA-Seq ExpressionHG10008216
SyntenyHG10008216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTTAGTTTTATTATTCTTATTCTTTTATTCATTATTCACATTTTATTAATTCTCTCCACCTCATTTTGTTAATATTTGTGTCCATTTAATTCTTCTCAGCTTCTTTTTTTTTTTTTTTTTTTCTCTCTCTCCATGTAGTCACGTTTTGTTCTATCGAAATATTTAGGATTTCTTTATAGCATCGACGTTTTGCTCTCCAAGTGGAGAGGATAACAACTATGGTTACAATCGAACCGAACCAAACCCATTCAAAGATCTGGTTCGGTTCAAAAACCAAAACTGAAGCATTTTCGATTTTTCCAGTTTAACAATGCTAAGAATTGAGAATTTTGGTTTGGTCCATGATTTGGTCAAAAATCGTACCAAATCGAACCATGTACACTCTTAAATATGTATATTTGACTCTTTTCCGTCGAGATTTTTCAGTTCGTTGTTCTTCCTTTCTTTGCTTTAAAGCTTGTTTATATATAATATGCATACATGACTACGACTTTTTTTTTAAGAAATAATATGTGAGTATATGAAATAAAGGTTTTTTTCCCTCTCTGAATGTTATACATATTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTAGAAAAAGTAAAATTGTTGAGTATATGAATGGACAATCAAAATAGAGAGAGAGAAATTGGCTAAAAAAAAGAGAGGATTTTTGGGGAAAAAAACAATAATAATAATAATAAAAAGAAATCGAAACATATAACATATGTCTATGGAATAAATCTTTAAAAAAAAAAAAAAAAATTGAAGAAGTTTGTTTATTACAAGAATCTTTAAAATTTTCGTTTTCAACTTAACTAAAATTTTAATGTTTTTTTTTTAAAACATGTTTTACCATTTATCTTTATGAAATTATGGGGAAAAAAAATAGGTAGGCAACCAAAGAGTTATATGAATATTGTATAAAAAATTGTTCTTAAGCTAAAAAACAACCAAAGAATTATATGAATATTATATATAAAAAATTGTTCTTTAGCTAAAAAAAATAAATGTATCAATGAAACACGTAATTATTAGATATTCAAGAAACATCTAATAATAGAATAAGTCTTAATGAAATAGTTAATTCTCAAATTAGGTTAATTGAAATGGTTAGGTTTTTTAAAAAAAAATAAAGAAAGATTTAGAGATTTAACCATCTTCAAAATCAATATTTCACTAATATTCTAAAATTCTAATATATTCCATAACTAGTTTTTTCATGGATTTTTAGATAAATTTATCTTTGTGGATCAATCTCTCCATTATTAATGTATCATTTTTTTTATAACTAAATATTAATAAAAAAAATAATACTAAATTTCAATTGAATAACAAATCATTATAATTGTCATTTAATGTTGGATATAATTATGATATTAATGTTGGGGTTTGATTTAATGATCATTATTTTATTCCTTTATTGTTATGGAATATATTCTTCAATTTAGGAATATGTTTTCAATTTTAAATATGTATTAGTTTATTTCAAATAATATGAGGACGTCATCTATCTTATTTTATGTTCTAATTTATCGTGTGTTAACATTATTATTATATGATATGGAGTATATATTTGCAGAATAACTAAATAAACATGTGAATATATAATAAAGTACATGAAATATTTATTCTAATTAGATTTGATATAAACATTGTATTTATTTGAAATAAGCTCTGTATACACACAAGAAAATGAAATGCACATAAACCACATTCATATGTTGCAATATACAACGATATATTTTTTTTCTAAACAAAAATATACAACGGTATATTTCTTGAGTGCATGAACATGACAGTTTTATACAATATATCATCTTATACAACACTACATTGTATATACAAAATAATGTACTCGACATATATTTGTATTTTCAAGAAATAAACTACAGTATATTTCTTAAGGGCATGAACATGATAGTTTTTACAACATACCATCTTATATACCGATGCATATTTTCATTTTCCACTATATTCAACACACAAAAATTAATGGAAAATTTTAAAAATAGAAAAATAAAAGAAACTATTTACACATAATAGCAAAATTTTTAGATAGTTGTGATAGTGTTGATAGAAGTCTATCAGTGATAGAAATGATAGAAGTCTATCAATGTCTATTAGTGTTTTTTTTTTTTTTTTTTTTGCTATTTTATGTAAATAGTTTGACATTTTTCTATCTGTGAGAATTTTCCAAAAATAAATCACGATATATTTCTAAAAAACTATAGAAAAGGCAGAAAAAAATAAAAAATAGTAAAAATGTAGATATAATTGTACAAGACTCGAACAACATAAAAACATGGGAACGAAAAAAATGAAAGAAAAATCATGTAAAAAATCACATAAACACGCAAAATTAAAAACAAAAATAAATGGAATTTTGAGGGGAAAGAAAAAGTAAACTGGATCTCCTAAGATTAAGAAAAACAACAAATATGCATTATCCCACATTAAATAAACCAAATCTCCTACAATTAAAAGAATAAATATGTATTATCTCGCATTAAATGCATTCTAACTAGATAATAACACACCAAAAGTAAAATTCAAAATTAACTCAATAAATAAATTGTTTCCATATTTGTTTTTCCATATTTGTGTTTTTACAAATTTTCTATTTTTTAAAATAAATATGGTTAGAAATTAATGGGTGTGATAGACTTTTAGACTTATTTGTATGTAACATTGTAATACATTAGGCCATTGATGAAAAAAAGGGTAGATTCAAGACATTATTGTAATTTTTATTTTAATTAGGCTATCAGCGTAAAAAGTCCAAAATTAAATTTTAGATTCTCTGTTTTTTGGACCTAAGAAAAATGTGGTCTCAAAGAAATACATTAGCCTTTTGGACCTAAGAAGTGGGCTTTGTTATTAGGGAACAGCAGCCCAAGAGAATCTCAAATGGAACCATCAAGCCCAAACGTTTTCTAATCCTTAATGCTACGTGTCAGACTGCAAATCTTCCAAAGCAAAACGTGGCACACAGTTCATCTGACACGTGTATCATCGACTCTGAAAGCCAAACCGCCAAAGCACAACCGAGCCCCATTTCGACTCTGTTCGCAAAAGAAAAAACAGAGAGACGAAAGGAATTAAAGGGGATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGTAAGAAGAGACTCATCAATCGGAGGAAGAAGAAAAGGATTCACAAAGTGATCGATTATCTGTTATCAGATTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATTAATTCTCATGCCTCACCCACAAGAGGGTTCTTCCACTTCTCTTCTTCATACACCATTCATTAATTTACCTCTAAAATTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATTAGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGGTATACAATTTCAATTTCAATTCAATTAAATTAAATCTTAATAGACTGTGAATCTGTTCAATCCTGTGTGTTTATTGTTTGAAATTGAATATTGATCTTGAAAAACAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTCTAACTTTCTAAACATTACTTCTGCTTTATATATATATATATATCTGGGTTGATTTCTCCATTATTTACGCATTCTACGTTCTTTTGGTTGGAGGTTTCTTAACAATTTATTTATTTTTGGTTGGGTTTGTATAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGA

mRNA sequence

ATGTCTACTGCAAATCTTCCAAAGCAAAACGTGGCACACAGTTCATCTGACACGTGTATCATCGACTCTGAAAGCCAAACCGCCAAAGCACAACCGAGCCCCATTTCGACTCTGTTCGCAAAAGAAAAAACAGAGAGACGAAAGGAATTAAAGGGGATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGA

Coding sequence (CDS)

ATGTCTACTGCAAATCTTCCAAAGCAAAACGTGGCACACAGTTCATCTGACACGTGTATCATCGACTCTGAAAGCCAAACCGCCAAAGCACAACCGAGCCCCATTTCGACTCTGTTCGCAAAAGAAAAAACAGAGAGACGAAAGGAATTAAAGGGGATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGA

Protein sequence

MSTANLPKQNVAHSSSDTCIIDSESQTAKAQPSPISTLFAKEKTERRKELKGMAKTMLHVGSGGGIGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSLSISGERDPKMRRIVVD
Homology
BLAST of HG10008216 vs. NCBI nr
Match: XP_038880614.1 (uncharacterized protein LOC120072259 [Benincasa hispida])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-41
Identity = 110/200 (55.00%), Postives = 123/200 (61.50%), Query Frame = 0

Query: 33  SPISTLFAKE-KTERRKELKGMAKTMLHVGSGGGI------------------------- 92
           S ISTLF ++ KTERR++LKGMAK M+HV  GGGI                         
Sbjct: 2   STISTLFTEDKKTERRRKLKGMAKKMVHVNGGGGIGKRRLIKRSKKKSLHKVIDYMLSDC 61

Query: 93  ---------------------GIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFR 152
                                GIEIRERTKDNRSL + IQDYLKSD YMYASLLAP S R
Sbjct: 62  YLFAPLLSSPSPINSHAVPTRGIEIRERTKDNRSLAKTIQDYLKSDCYMYASLLAPQSLR 121

Query: 153 LRLREKGETGGVGYVKRVSREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPN 186
           L+LREKGETG VGYVK+V             +EVMV++DFVEATVN TP ESS RSI+  
Sbjct: 122 LKLREKGETGHVGYVKKV------------RKEVMVMTDFVEATVNGTPTESSKRSIYAT 181

BLAST of HG10008216 vs. NCBI nr
Match: XP_008443802.1 (PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo] >TYJ95950.1 uncharacterized protein E5676_scaffold271G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 5.4e-26
Identity = 77/120 (64.17%), Postives = 89/120 (74.17%), Query Frame = 0

Query: 67  GIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSRE 126
           GIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+VS  
Sbjct: 64  GIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKVS-- 123

Query: 127 VSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSLSISGERDPKM-RRIVVD 186
                      EV+V+S+FVEATV+ TP+    RSI+ NSPSL++SGERDPK+ RRIVVD
Sbjct: 124 ----------GEVVVMSNFVEATVSGTPQ----RSIYSNSPSLTLSGERDPKVRRRIVVD 165

BLAST of HG10008216 vs. NCBI nr
Match: XP_008443803.1 (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-15
Identity = 56/89 (62.92%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 67  GIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSRE 126
           GIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+VS  
Sbjct: 64  GIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKVS-- 123

Query: 127 VSRTTCNRGEEEVMVISDFVEATVNSTPR 156
                      EV+V+S+FVEATV+ T R
Sbjct: 124 ----------GEVVVMSNFVEATVSVTQR 138

BLAST of HG10008216 vs. NCBI nr
Match: XP_022968868.1 (uncharacterized protein LOC111468025 [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 68  IEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKR-VSRE 127
           IEIRER KD+RS ++K+ DYLKSD YMYASL+AP SFR         G  GYVKR V+ E
Sbjct: 68  IEIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFR---------GRAGYVKRVVTTE 127

Query: 128 VS-RTTCNRGEE 138
           VS R    RG+E
Sbjct: 128 VSARRLILRGDE 130

BLAST of HG10008216 vs. NCBI nr
Match: XP_022933890.1 (uncharacterized protein LOC111441170 isoform X1 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-07
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 68  IEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKR-VSRE 127
           IEIRER KD+RS ++K+ DYLKSD YMYASL+AP SF+         G  GYVKR V+ E
Sbjct: 68  IEIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFK---------GRAGYVKRVVTTE 127

Query: 128 VS-RTTCNRGEE 138
           VS R    RG+E
Sbjct: 128 VSARRLILRGDE 130

BLAST of HG10008216 vs. ExPASy TrEMBL
Match: A0A5D3B7P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00120 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 77/120 (64.17%), Postives = 89/120 (74.17%), Query Frame = 0

Query: 67  GIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSRE 126
           GIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+VS  
Sbjct: 64  GIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKVS-- 123

Query: 127 VSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSLSISGERDPKM-RRIVVD 186
                      EV+V+S+FVEATV+ TP+    RSI+ NSPSL++SGERDPK+ RRIVVD
Sbjct: 124 ----------GEVVVMSNFVEATVSGTPQ----RSIYSNSPSLTLSGERDPKVRRRIVVD 165

BLAST of HG10008216 vs. ExPASy TrEMBL
Match: A0A1S3B8Y3 (uncharacterized protein LOC103487306 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 77/120 (64.17%), Postives = 89/120 (74.17%), Query Frame = 0

Query: 67  GIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSRE 126
           GIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+VS  
Sbjct: 64  GIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKVS-- 123

Query: 127 VSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSLSISGERDPKM-RRIVVD 186
                      EV+V+S+FVEATV+ TP+    RSI+ NSPSL++SGERDPK+ RRIVVD
Sbjct: 124 ----------GEVVVMSNFVEATVSGTPQ----RSIYSNSPSLTLSGERDPKVRRRIVVD 165

BLAST of HG10008216 vs. ExPASy TrEMBL
Match: A0A1S3B9M0 (uncharacterized protein LOC103487306 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.5e-16
Identity = 56/89 (62.92%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 67  GIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSRE 126
           GIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+VS  
Sbjct: 64  GIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKVS-- 123

Query: 127 VSRTTCNRGEEEVMVISDFVEATVNSTPR 156
                      EV+V+S+FVEATV+ T R
Sbjct: 124 ----------GEVVVMSNFVEATVSVTQR 138

BLAST of HG10008216 vs. ExPASy TrEMBL
Match: A0A0A0LZ66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294070 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 110 EKGETGGVGYVKRVSREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSL 169
           EKGETG V YVK+VS             EV+V+SDFVEATVN TP     RSI+ NSPSL
Sbjct: 2   EKGETGRVEYVKKVS------------GEVVVMSDFVEATVNGTP----DRSIYSNSPSL 61

Query: 170 SISGERDPK-MRRIVVD 186
           ++SGERDPK  RRIVVD
Sbjct: 62  TLSGERDPKARRRIVVD 62

BLAST of HG10008216 vs. ExPASy TrEMBL
Match: A0A6J1HZC1 (uncharacterized protein LOC111468025 OS=Cucurbita maxima OX=3661 GN=LOC111468025 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 68  IEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKR-VSRE 127
           IEIRER KD+RS ++K+ DYLKSD YMYASL+AP SFR         G  GYVKR V+ E
Sbjct: 68  IEIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFR---------GRAGYVKRVVTTE 127

Query: 128 VS-RTTCNRGEE 138
           VS R    RG+E
Sbjct: 128 VSARRLILRGDE 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038880614.11.2e-4155.00uncharacterized protein LOC120072259 [Benincasa hispida][more]
XP_008443802.15.4e-2664.17PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo] >TYJ95... [more]
XP_008443803.11.1e-1562.92PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo][more]
XP_022968868.11.1e-0758.33uncharacterized protein LOC111468025 [Cucurbita maxima][more]
XP_022933890.12.5e-0756.94uncharacterized protein LOC111441170 isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7P72.6e-2664.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B8Y32.6e-2664.17uncharacterized protein LOC103487306 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3B9M05.5e-1662.92uncharacterized protein LOC103487306 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0LZ664.5e-1061.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294070 PE=4 SV=1[more]
A0A6J1HZC15.5e-0858.33uncharacterized protein LOC111468025 OS=Cucurbita maxima OX=3661 GN=LOC111468025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008216.1HG10008216.1mRNA