HG10008193 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008193
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	Chr10: 20649535 .. 20649798 (+)
RNA-Seq Expression	HG10008193
Synteny	HG10008193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCGCCGTACCTTATCCCCTTTCGAACAACAATAATGGCAGAAAATTCCGAATCACATCGGCAAAACGTACACAAAATTCCGATTCCGATTCCACTTCATCAACACAAGCAAATCAACTCAAATTTCCCTCACTCAGAGTATCAAATCCGCTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATGAAAAATTTTACCTCTAA

mRNA sequence

ATGGCGATCGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCGCCGTACCTTATCCCCTTTCGAACAACAATAATGGCAGAAAATTCCGAATCACATCGGCAAAACGTACACAAAATTCCGATTCCGATTCCACTTCATCAACACAAGCAAATCAACTCAAATTTCCCTCACTCAGAGTATCAAATCCGCTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATGAAAAATTTTACCTCTAA

Coding sequence (CDS)

ATGGCGATCGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCGCCGTACCTTATCCCCTTTCGAACAACAATAATGGCAGAAAATTCCGAATCACATCGGCAAAACGTACACAAAATTCCGATTCCGATTCCACTTCATCAACACAAGCAAATCAACTCAAATTTCCCTCACTCAGAGTATCAAATCCGCTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATGAAAAATTTTACCTCTAA

Protein sequence

MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSNPLLARSVVSVLGLGFVDAGYEKFYL

Homology

[Close]

BLAST of HG10008193 vs. NCBI nr
Match: XP_004146667.1 (uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical protein Csa_020133 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRV 60
          MA+VDSSFIFIGFS VP+PL NNNNGRKF ITSAKRTQ+SDSDS SSTQ NQ KFPSLRV
Sbjct: 1  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60

Query: 61 SNPLLARSVVSVLGLGFVDAGY 83
          SNPLLARSVVSVLGLGFVDAGY
Sbjct: 61 SNPLLARSVVSVLGLGFVDAGY 82

[Close]

BLAST of HG10008193 vs. NCBI nr
Match: XP_008443827.1 (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-26
Identity = 73/85 (85.88%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPS 60
          MA+VDSSFIFIG SAVP+PL N   NNNGRKF ITSAKRTQ  DSDSTSSTQ NQ KFPS
Sbjct: 1  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQ--DSDSTSSTQPNQFKFPS 60

Query: 61 LRVSNPLLARSVVSVLGLGFVDAGY 83
          LRVSNPLLARSVVSVLGLGFVDAGY
Sbjct: 61 LRVSNPLLARSVVSVLGLGFVDAGY 83

[Close]

BLAST of HG10008193 vs. NCBI nr
Match: XP_038879768.1 (uncharacterized protein LOC120071517 [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1   MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRV 60
           MA+V+SSFIFIG S VPYPLSNNN+ RKFRITSAK T++SDSDS SS    QLKFPSLRV
Sbjct: 27  MAMVNSSFIFIGVSTVPYPLSNNNHSRKFRITSAKLTEDSDSDSKSS----QLKFPSLRV 86

Query: 61  SNPLLARSVVSVLGLGFVDAGY 83
           SNPLLARSVVSVLGLGFVDAGY
Sbjct: 87  SNPLLARSVVSVLGLGFVDAGY 104

[Close]

BLAST of HG10008193 vs. NCBI nr
Match: XP_023531156.1 (uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 4.7e-20
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLR 60
          M I DS+FIF G SA+P+P L +NNN RKF  TSAKRT +SDSDS SST   QLKFPSLR
Sbjct: 1  MPIADSTFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSDSISST---QLKFPSLR 60

Query: 61 VSNPLLARSVVSVLGLGFVDAGY 83
          V+NPLLARSVV+VLGLGFVDAGY
Sbjct: 61 VANPLLARSVVAVLGLGFVDAGY 80

[Close]

BLAST of HG10008193 vs. NCBI nr
Match: XP_023004836.1 (uncharacterized protein LOC111498016 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-19
Identity = 63/83 (75.90%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MAIVDSSFIFIGFSAVPYPL-SNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLR 60
          M I DSSFIF G SA+P+PL  +NNN RKF  TSAKRT   DSDS SST   QLKFPSLR
Sbjct: 1  MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLR 60

Query: 61 VSNPLLARSVVSVLGLGFVDAGY 83
          VSNPLLARSVV+VLGLGFVDAGY
Sbjct: 61 VSNPLLARSVVAVLGLGFVDAGY 78

[Close]

BLAST of HG10008193 vs. ExPASy TrEMBL
Match: A0A0A0LWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MAIVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRV 60
          MA+VDSSFIFIGFS VP+PL NNNNGRKF ITSAKRTQ+SDSDS SSTQ NQ KFPSLRV
Sbjct: 1  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60

Query: 61 SNPLLARSVVSVLGLGFVDAGY 83
          SNPLLARSVVSVLGLGFVDAGY
Sbjct: 61 SNPLLARSVVSVLGLGFVDAGY 82

[Close]

BLAST of HG10008193 vs. ExPASy TrEMBL
Match: A0A1S3B903 (uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 73/85 (85.88%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MAIVDSSFIFIGFSAVPYPLSN---NNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPS 60
          MA+VDSSFIFIG SAVP+PL N   NNNGRKF ITSAKRTQ  DSDSTSSTQ NQ KFPS
Sbjct: 1  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQ--DSDSTSSTQPNQFKFPS 60

Query: 61 LRVSNPLLARSVVSVLGLGFVDAGY 83
          LRVSNPLLARSVVSVLGLGFVDAGY
Sbjct: 61 LRVSNPLLARSVVSVLGLGFVDAGY 83

[Close]

BLAST of HG10008193 vs. ExPASy TrEMBL
Match: A0A6J1KT82 (uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 63/83 (75.90%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MAIVDSSFIFIGFSAVPYPL-SNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLR 60
          M I DSSFIF G SA+P+PL  +NNN RKF  TSAKRT   DSDS SST   QLKFPSLR
Sbjct: 1  MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLR 60

Query: 61 VSNPLLARSVVSVLGLGFVDAGY 83
          VSNPLLARSVV+VLGLGFVDAGY
Sbjct: 61 VSNPLLARSVVAVLGLGFVDAGY 78

[Close]

BLAST of HG10008193 vs. ExPASy TrEMBL
Match: A0A6J1EZT4 (uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC111440861 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.2e-19
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MAIVDSSFIFIGFSAVPYP-LSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLR 60
          M I DSSFIF G SA+P+P L +NNN RKF  TSAKRT   DSDS SST   QLKFPSLR
Sbjct: 1  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLR 60

Query: 61 VSNPLLARSVVSVLGLGFVDAGY 83
          V+NPLLARSVV+VLGLGFVDAGY
Sbjct: 61 VANPLLARSVVAVLGLGFVDAGY 78

[Close]

BLAST of HG10008193 vs. ExPASy TrEMBL
Match: A0A6J1C0R6 (uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007301 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.4e-14
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 3  IVDSSFIFIGFSAVPYPLSNNNNGRKFRITSAKRTQNSDSDSTSSTQANQLKFPSLRVSN 62
          + DS+FIF G SAV   L N NN R FR   AKRT   DS +T S Q NQ +FPSLRV N
Sbjct: 1  MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRT--DDSTATKSNQENQFEFPSLRVPN 60

Query: 63 PLLARSVVSVLGLGFVDAGY 83
          PL+AR VVSVLGLGFVDAGY
Sbjct: 61 PLVARFVVSVLGLGFVDAGY 78

The following BLAST results are available for this feature:

BLAST of HG10008193 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146667.1	3.2e-29	89.02	uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical ...	[more]
XP_008443827.1	3.3e-26	85.88	PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]	[more]
XP_038879768.1	1.1e-24	82.93	uncharacterized protein LOC120071517 [Benincasa hispida]	[more]
XP_023531156.1	4.7e-20	74.70	uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]	[more]
XP_023004836.1	3.9e-19	75.90	uncharacterized protein LOC111498016 [Cucurbita maxima]	[more]

BLAST of HG10008193 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWH4	1.6e-29	89.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1	[more]
A0A1S3B903	1.6e-26	85.88	uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=...	[more]
A0A6J1KT82	1.9e-19	75.90	uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016...	[more]
A0A6J1EZT4	4.2e-19	74.70	uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1C0R6	2.4e-14	65.00	uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of HG10008193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008193.1	HG10008193.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane