HG10008179 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008179
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 20522074 .. 20522499 (-)
RNA-Seq Expression	HG10008179
Synteny	HG10008179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATCTTAAACCTCTCCAAATTCTACTGCTAATGGCGCCTCTTCTTCTTGCCTCTCAACTCGATTCCGTTTTCGCTCACACAGATACAGCCACTCCCAATCTTCCCCAAGAAACAACCAATGGAGGACCTCTCTCTTCCTCAGATCCTCATCTTCCTCCGCCTCGCAACAACCAAACAGCCGACCAAAACCGTAGGAAAAAAATTATCGAAGAACTTGTCGCTAAACTCTCTCCAAAACGCTTCAGATCTCATCGCGTTTCAATTAGGAAACGCCGAAAACGCCAACGCCAACGACGCGCTTGGCGACACGCTTCCAGTCATTCCTCCCAAGGTTATATTCTGATGGTTTCTTTGCCGAACATTTGCTTCGCGATTCTTTCGTTGATCCTGCATAATCTGGTTTCTGTTAATTCACTTTGA

mRNA sequence

ATGGCCGATCTTAAACCTCTCCAAATTCTACTGCTAATGGCGCCTCTTCTTCTTGCCTCTCAACTCGATTCCGTTTTCGCTCACACAGATACAGCCACTCCCAATCTTCCCCAAGAAACAACCAATGGAGGACCTCTCTCTTCCTCAGATCCTCATCTTCCTCCGCCTCGCAACAACCAAACAGCCGACCAAAACCGTAGGAAAAAAATTATCGAAGAACTTGTCGCTAAACTCTCTCCAAAACGCTTCAGATCTCATCGCGTTTCAATTAGGAAACGCCGAAAACGCCAACGCCAACGACGCGCTTGGCGACACGCTTCCAGTCATTCCTCCCAAGGTTATATTCTGATGGTTTCTTTGCCGAACATTTGCTTCGCGATTCTTTCGTTGATCCTGCATAATCTGGTTTCTGTTAATTCACTTTGA

Coding sequence (CDS)

ATGGCCGATCTTAAACCTCTCCAAATTCTACTGCTAATGGCGCCTCTTCTTCTTGCCTCTCAACTCGATTCCGTTTTCGCTCACACAGATACAGCCACTCCCAATCTTCCCCAAGAAACAACCAATGGAGGACCTCTCTCTTCCTCAGATCCTCATCTTCCTCCGCCTCGCAACAACCAAACAGCCGACCAAAACCGTAGGAAAAAAATTATCGAAGAACTTGTCGCTAAACTCTCTCCAAAACGCTTCAGATCTCATCGCGTTTCAATTAGGAAACGCCGAAAACGCCAACGCCAACGACGCGCTTGGCGACACGCTTCCAGTCATTCCTCCCAAGGTTATATTCTGATGGTTTCTTTGCCGAACATTTGCTTCGCGATTCTTTCGTTGATCCTGCATAATCTGGTTTCTGTTAATTCACTTTGA

Protein sequence

MADLKPLQILLLMAPLLLASQLDSVFAHTDTATPNLPQETTNGGPLSSSDPHLPPPRNNQTADQNRRKKIIEELVAKLSPKRFRSHRVSIRKRRKRQRQRRAWRHASSHSSQGYILMVSLPNICFAILSLILHNLVSVNSL

Homology

[Close]

BLAST of HG10008179 vs. NCBI nr
Match: KAA0035099.1 (hypothetical protein E6C27_scaffold57G001740 [Cucumis melo var. makuwa] >TYJ95979.1 hypothetical protein E5676_scaffold271G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-16
Identity = 74/133 (55.64%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MADLKPLQILLLMAP--LLLASQLDSVFAHTDTAT-PNLPQETTNGGPLSSSDPHLPPPR 60
           MAD KPL +LL+MAP  LLLASQL+S+FA TD+ T PNLPQ+T N   L SSDPHL PP 
Sbjct: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKERLPSSDPHLSPPL 75

Query: 61  NNQTADQNRRKKIIEELVA--KLSPKRFRSHRVSIRKRRKRQRQRRAWRHASSHSSQGYI 120
           +NQ A +N  K    + +A  +LS KR RS+R SIRKRR+R    RAW    S+SS+G +
Sbjct: 76  SNQRAARNNTKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRR-NHLRAWHR--SYSSRGCL 135

Query: 121 LMVSLPNICFAIL 129
             VSL  I F IL
Sbjct: 136 PTVSLLYIWFGIL 145

[Close]

BLAST of HG10008179 vs. ExPASy TrEMBL
Match: A0A0A0LTC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257320 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.3e-21
Identity = 83/145 (57.24%), Postives = 100/145 (68.97%), Query Frame = 0


Query: 1   MADLKPLQILLLMAPLL-LASQLDSVFAHTDTATP-NLPQETTNGGP-LSSSDPHLPPPR 60
           MADLKPL +LL++APLL LASQL+ +FAHTD++TP NLPQ+TTN    L SSDPHL PP 
Sbjct: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60

Query: 61  NNQTADQNRRKKIIEELVA--KLSPKRFRSHRVSIRKRRKRQRQRRAWRHASSHSSQGYI 120
           +NQ A +N + K     +A  K+S KR RS R SIRKRR+R  Q RAWR   ++SS G  
Sbjct: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQ-RAWRR-RNYSSHGCR 120

Query: 121 LMVSLPNICFAILSLILHNLVSVNS 141
           L VSL  I F I   ILHNL+  NS
Sbjct: 121 LTVSLSYIWFGIFWSILHNLIYFNS 143

[Close]

BLAST of HG10008179 vs. ExPASy TrEMBL
Match: A0A5D3BAD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00490 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 74/133 (55.64%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MADLKPLQILLLMAP--LLLASQLDSVFAHTDTAT-PNLPQETTNGGPLSSSDPHLPPPR 60
           MAD KPL +LL+MAP  LLLASQL+S+FA TD+ T PNLPQ+T N   L SSDPHL PP 
Sbjct: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKERLPSSDPHLSPPL 75

Query: 61  NNQTADQNRRKKIIEELVA--KLSPKRFRSHRVSIRKRRKRQRQRRAWRHASSHSSQGYI 120
           +NQ A +N  K    + +A  +LS KR RS+R SIRKRR+R    RAW    S+SS+G +
Sbjct: 76  SNQRAARNNTKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRR-NHLRAWHR--SYSSRGCL 135

Query: 121 LMVSLPNICFAIL 129
             VSL  I F IL
Sbjct: 136 PTVSLLYIWFGIL 145

The following BLAST results are available for this feature:

BLAST of HG10008179 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035099.1	2.3e-16	55.64	hypothetical protein E6C27_scaffold57G001740 [Cucumis melo var. makuwa] >TYJ9597...	[more]

BLAST of HG10008179 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTC2	3.3e-21	57.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257320 PE=4 SV=1	[more]
A0A5D3BAD8	1.1e-16	55.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10008179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008179.1	HG10008179.1	mRNA