HG10008178 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008178
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 20519987 .. 20520833 (-)
RNA-Seq Expression	HG10008178
Synteny	HG10008178

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAAGGACTAGTCATTTTGCTCCTCTTCTCCCTTATTTCCCTATATCTCCTTCCATTTTGCCTATCTGAAACCAATTTCATCACCAAAGCTGATGATCACTACAAGCAACTGAAGCAGGGGAGGCCTAGAAAAGGTAACAAATCTAACCATCTTTTGAATTTTGCACTTGAAGAACAGTGTGTGAGAAGCACTATTTTTTAAGGCTCAAGCCGCAATAAAGTGCAATAGTTTTCTGGGGTTTAGGTGCAATGCGCAAAAAAATGCGCAAGTTTTTTTTTTTTTTTTTTTTAGGCACACTATATATAAAAGTACTACTTAAAGAAGAGAAAGCAAATATGGAGAGAAAGAAAAAGACCCCTAAACGCAAGAAATTTTGCATTTAGGCTTAATAAATTTGATTTTTTAGTTAATAAAGAAGCAAAAACCGCAATTATTACTATTTTTAAAAATAATAACAAAGCCCCAAGGTGCATGGCTTTGAGCCTTGGGGCTTCACAAAAGGTGTGCGTCTTATTTTGTGAGTCTTGCCTTTTCAAGGTGAGGCGCCAGACTTGGGCCTTGAGTCTAAGCATGTGCCTGGCAGGGCTTTTTAAAATACTGGTGAAAAGTGCTTTCTTGTGTTGCTGGATCTGCAGATTTACAGGGCAGTGAACAAATAAATGGTGGAGCTGCGATGGTGACCGTTAAGAGAGCAAAAGCAGTTTATGGCGGTGCGAACGACATTCATCATGGGCACTCGAAGAATGATGCTAACCGTTTACAGATCAAATCAACTTCTTCGTTGCTGTGGAAAGTTTCATTTGGTTTCTTTGGTTTCTGTCTTCTTCTTAAAGGTTTTTAA

mRNA sequence

ATGACGAAAGGACTAGTCATTTTGCTCCTCTTCTCCCTTATTTCCCTATATCTCCTTCCATTTTGCCTATCTGAAACCAATTTCATCACCAAAGCTGATGATCACTACAAGCAACTGAAGCAGGGGAGGCCTAGAAAAGATTTACAGGGCAGTGAACAAATAAATGGTGGAGCTGCGATGGTGACCGTTAAGAGAGCAAAAGCAGTTTATGGCGGTGCGAACGACATTCATCATGGGCACTCGAAGAATGATGCTAACCGTTTACAGATCAAATCAACTTCTTCGTTGCTGTGGAAAGTTTCATTTGGTTTCTTTGGTTTCTGTCTTCTTCTTAAAGGTTTTTAA

Coding sequence (CDS)

ATGACGAAAGGACTAGTCATTTTGCTCCTCTTCTCCCTTATTTCCCTATATCTCCTTCCATTTTGCCTATCTGAAACCAATTTCATCACCAAAGCTGATGATCACTACAAGCAACTGAAGCAGGGGAGGCCTAGAAAAGATTTACAGGGCAGTGAACAAATAAATGGTGGAGCTGCGATGGTGACCGTTAAGAGAGCAAAAGCAGTTTATGGCGGTGCGAACGACATTCATCATGGGCACTCGAAGAATGATGCTAACCGTTTACAGATCAAATCAACTTCTTCGTTGCTGTGGAAAGTTTCATTTGGTTTCTTTGGTTTCTGTCTTCTTCTTAAAGGTTTTTAA

Protein sequence

MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKDLQGSEQINGGAAMVTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLKGF

Homology

[Close]

BLAST of HG10008178 vs. NCBI nr
Match: KGN65174.1 (hypothetical protein Csa_019558 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKDLQGSEQINGGAAM 60
           M KGL++L LFS+I LYLLPFCL ETNF TKADDH KQLKQGRPRKD+Q SE+++GGA++
Sbjct: 1   MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV 60

Query: 61  VTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLKGF 115
            TV RAKAVYGGANDIHHGHSKNDAN L IKS SSL+WKVSFGF GFC+++KGF
Sbjct: 61  ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF 114

[Close]

BLAST of HG10008178 vs. NCBI nr
Match: KAA0035098.1 (uncharacterized protein E6C27_scaffold57G001730 [Cucumis melo var. makuwa] >TYJ95980.1 uncharacterized protein E5676_scaffold271G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 4.8e-41
Identity = 90/115 (78.26%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRK---DLQGSEQINGG 60
           M KGL+IL LFS++ LYLLPFCL ETNF TKADDH KQLKQGRPRK   DLQGSE+++GG
Sbjct: 1   MKKGLLILFLFSILCLYLLPFCLCETNFTTKADDHDKQLKQGRPRKGSTDLQGSEELHGG 60

Query: 61  AAMVTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLK 113
           AA+VTV RAKAVYGGANDIHHG SKNDAN L+IKS SSL+WKVSFGF GFCL++K
Sbjct: 61  AAVVTVMRAKAVYGGANDIHHGRSKNDANSLRIKSISSLVWKVSFGFLGFCLIVK 115

[Close]

BLAST of HG10008178 vs. NCBI nr
Match: XP_022988599.1 (uncharacterized protein LOC111485797 [Cucurbita maxima])

HSP 1 Score: 147.1 bits (370), Expect = 9.1e-32
Identity = 80/113 (70.80%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKDLQGSEQINGGAAM 60
           M KG  +LLL SL+ L LLPFCLSE  F  KA D YK LKQGRPRKDLQ SEQIN GAA 
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEAYFTNKAYDPYKHLKQGRPRKDLQASEQINVGAA- 60

Query: 61  VTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLKG 114
             V RA+ VYGG NDIH GHSKNDAN L+IKSTSSLLW+VS GFF  C+LL G
Sbjct: 61  TRVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWEVSCGFFSLCVLLTG 112

[Close]

BLAST of HG10008178 vs. NCBI nr
Match: XP_022921746.1 (uncharacterized protein LOC111429900 [Cucurbita moschata])

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-31
Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKDLQGSEQINGGAAM 60
           M KG  +LLL SL+ L LLPFCLSE +F  KA D YK LKQGRPRKDLQ S+QIN GAA 
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEAHFTNKAYDPYKHLKQGRPRKDLQDSKQINVGAA- 60

Query: 61  VTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLKG 114
             V RA+ VYGG NDIH GHSKNDAN L+IKSTSSLLW VS GFF  C+LL G
Sbjct: 61  TKVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDVSCGFFSLCVLLTG 112

[Close]

BLAST of HG10008178 vs. NCBI nr
Match: XP_023516536.1 (uncharacterized protein LOC111780387 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 79/113 (69.91%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKDLQGSEQINGGAAM 60
           M KG  +LLL SL+ L LLPFCLSE  F  KA D YK LKQGRPRKDLQ S+QI  GAA 
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEAYFTNKAYDPYKHLKQGRPRKDLQDSKQIKVGAA- 60

Query: 61  VTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLKG 114
            TV RA+ VYGG NDIH GHSKNDAN L+IKSTSSLLW VS GFF  C+LL G
Sbjct: 61  TTVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDVSCGFFSLCVLLTG 112

[Close]

BLAST of HG10008178 vs. ExPASy TrEMBL
Match: A0A0A0LW17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257310 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKDLQGSEQINGGAAM 60
           M KGL++L LFS+I LYLLPFCL ETNF TKADDH KQLKQGRPRKD+Q SE+++GGA++
Sbjct: 1   MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV 60

Query: 61  VTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLKGF 115
            TV RAKAVYGGANDIHHGHSKNDAN L IKS SSL+WKVSFGF GFC+++KGF
Sbjct: 61  ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF 114

[Close]

BLAST of HG10008178 vs. ExPASy TrEMBL
Match: A0A5A7SWW6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00500 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.3e-41
Identity = 90/115 (78.26%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRK---DLQGSEQINGG 60
           M KGL+IL LFS++ LYLLPFCL ETNF TKADDH KQLKQGRPRK   DLQGSE+++GG
Sbjct: 1   MKKGLLILFLFSILCLYLLPFCLCETNFTTKADDHDKQLKQGRPRKGSTDLQGSEELHGG 60

Query: 61  AAMVTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLK 113
           AA+VTV RAKAVYGGANDIHHG SKNDAN L+IKS SSL+WKVSFGF GFCL++K
Sbjct: 61  AAVVTVMRAKAVYGGANDIHHGRSKNDANSLRIKSISSLVWKVSFGFLGFCLIVK 115

[Close]

BLAST of HG10008178 vs. ExPASy TrEMBL
Match: A0A6J1JM10 (uncharacterized protein LOC111485797 OS=Cucurbita maxima OX=3661 GN=LOC111485797 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.4e-32
Identity = 80/113 (70.80%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKDLQGSEQINGGAAM 60
           M KG  +LLL SL+ L LLPFCLSE  F  KA D YK LKQGRPRKDLQ SEQIN GAA 
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEAYFTNKAYDPYKHLKQGRPRKDLQASEQINVGAA- 60

Query: 61  VTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLKG 114
             V RA+ VYGG NDIH GHSKNDAN L+IKSTSSLLW+VS GFF  C+LL G
Sbjct: 61  TRVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWEVSCGFFSLCVLLTG 112

[Close]

BLAST of HG10008178 vs. ExPASy TrEMBL
Match: A0A6J1E284 (uncharacterized protein LOC111429900 OS=Cucurbita moschata OX=3662 GN=LOC111429900 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKDLQGSEQINGGAAM 60
           M KG  +LLL SL+ L LLPFCLSE +F  KA D YK LKQGRPRKDLQ S+QIN GAA 
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEAHFTNKAYDPYKHLKQGRPRKDLQDSKQINVGAA- 60

Query: 61  VTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLLKG 114
             V RA+ VYGG NDIH GHSKNDAN L+IKSTSSLLW VS GFF  C+LL G
Sbjct: 61  TKVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDVSCGFFSLCVLLTG 112

[Close]

BLAST of HG10008178 vs. ExPASy TrEMBL
Match: A0A6J1C4Y5 (uncharacterized protein LOC111007432 OS=Momordica charantia OX=3673 GN=LOC111007432 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 4   GLVILLLFSLISLYLLPFCLS-ETNFITKADDHYK-QLKQGRPRKDLQG----SEQINGG 63
           GL+ILLL S+     LP C S ETNF  K +D YK QLKQGRP KDL+G    SE+   G
Sbjct: 5   GLIILLLISID--LSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGAG 64

Query: 64  AAMVTVKRAKAVYGGANDIHHGHSKNDANRLQIKSTSSLLWKV 101
           A    + RA+ VYGGA+D+  GHSKNDA  L+IKS  S  W+V
Sbjct: 65  ATAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSIPSSFWEV 105

The following BLAST results are available for this feature:

BLAST of HG10008178 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65174.1	3.3e-42	77.19	hypothetical protein Csa_019558 [Cucumis sativus]	[more]
KAA0035098.1	4.8e-41	78.26	uncharacterized protein E6C27_scaffold57G001730 [Cucumis melo var. makuwa] >TYJ9...	[more]
XP_022988599.1	9.1e-32	70.80	uncharacterized protein LOC111485797 [Cucurbita maxima]	[more]
XP_022921746.1	2.6e-31	69.91	uncharacterized protein LOC111429900 [Cucurbita moschata]	[more]
XP_023516536.1	5.9e-31	69.91	uncharacterized protein LOC111780387 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10008178 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008178 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW17	1.6e-42	77.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257310 PE=4 SV=1	[more]
A0A5A7SWW6	2.3e-41	78.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JM10	4.4e-32	70.80	uncharacterized protein LOC111485797 OS=Cucurbita maxima OX=3661 GN=LOC111485797...	[more]
A0A6J1E284	1.3e-31	69.91	uncharacterized protein LOC111429900 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1C4Y5	1.1e-14	54.37	uncharacterized protein LOC111007432 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of HG10008178 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008178.1	HG10008178.1	mRNA