HG10008166 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008166
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Eukaryotic translation initiation factor 5A
Location	Chr10: 20454244 .. 20459035 (+)
RNA-Seq Expression	HG10008166
Synteny	HG10008166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTCCCATTGAATAAATTTTGGTTTTATTTCTTTATTTTTTTTAATCATGCAAGTGGGTTTGTGCTATTTTTTCTTCTTCTTAAGCTTCTTGATCGTTTAGATTATTTTATTATAATTCTTCCTTGGCTCTTTGTTTTCTGAAAGGGTAGACGTTTGGTTGTTCGCTAATTTTGATGGTTCTGTTTCTAAGCGAAGATGGTCCATAACTTTTAACTCTGTGACTACTGATTATGGTCATTGCTACTGTTATTGATGGTCTCCCTGATTGATTTAGGTTTCCTCTTTACTTTCTCTTCGGTTGGACCTTGTGCTTTTGGGCTATTGAAAGTATATATAGAAGATTTTGTACATAATTATGGTGGATGAAACTGCTTTTCTTGAAATAAAAGGATTTTTGGTTATAGGAGGAAGACTTTATCCCATAGTAATAATTGCAGTGGGAAACCAAAGTTAAAGGTTGTGTAAATCCCTCTACATCATGTTGAACAATTTCAGTGGGAATATACTTTGAAGAGGTTGTGCAAGATCTGACTTAATTGGTTTGGTGTAAGTGCAAGACTATGAAATTTCAGGGTTACTGGTTGATTATCTTTAATGGCACTGGCAAGTAATTATTTCACCCAATTTGAATTCGTTATATGAAATATGTGGCCTTGGTTTGCCAAAAATGTAGCTTGTGCGTGCATCGTTTTAGTAAGTTTTTTGAGATGGACTTGGCTTATGAGGTAGATGCCAGGATAAAATGCTAATAGTGGATATATTTCTCATGCTGCATTTGTCTTTTGTGAGTAACTAATAGGGATATATATATATATATATATAGGTAATATTAATATGGTTGTAGTTAGGACTTAATGGGTAATTGACTAGTGGTGTTTTGGGTATAAATGAGAGGACTTGGGCATCTTAGAGGGGTGGATCATTTTGGTGAAAGTTTCCATTATGGAACTTTGGGAGAGAGATAACCTCTTGAAAGGCTATTGGTATATGGTAACTTCTCTTGATATTGCATTATATATATCTTTGTGTTTCTTTGAGTTTTATTGTTAGGTGGTATCCTAACATCTTCTTGGTTAATAAAACATCTTTGAAGCATTAGCAAAGCTTTTCTTTTCTAGAAAGAACTATGCTAGCATGTCATCTTCTTTTTGTGTGGTCAAATGATACAATGTTCATGGTTATAGTTCCATTTGCCATGGGGGACTTTACAGTCCTTTTGGAGCCTTCCTTGGCCAGAGGTTTATGAAACTTGAAAAGTTAAATACCCGAAGACCGGCCATCTTTTGGGTTCTTTTGAAGGAGAGAAATCAAAGATTCTTTTTGGATAAAGAGCACCCATTTGAAATGTTCTTTGACCTCGTTGTTTATTATGCTATATCATGATGTAAATTGTTTAATCTATTTGCTTCGTATAGCTATGCTTCCCTTTTAATCAATTGGGAAAGCCTATTGTAATCCTCGTGGATCTCTCATCCACAGAAAAGTTCAAACATCAATGAAATCGTTTCTTATATAAAAGAACAGTTCCATTTTCCATGACTTTGAAGGTTATCTGATATGTGCCATGCATATATGAATTAGTATGATTTCAAGTCACTTACCAAGCATATTATGCTGCCATATATCAGCCTTTTTTTCCCTTTCCCCATAACTCTCTTCCTTTCAGGTTGTTGAAGTTTCGACTTCAAAAACTGGAAAGCACGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCATAACTGTGATGTAATTTCTTTGTCACTCTCTTCTTGTGTTCTACTTATCTAAGTACTGATTTTATTCTTCTAAGAAACTTTGCTTGTATTCCTTGTATTACTATGCCTTTGCAGGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCCGAGGATGGTTTTGTAAGTTCTAATTATATTGTACACGATATTGCTTTATATACGAAAGCTTAGATCAATTTCTCTGTCTATTGCTTCAATAAAGATTTGAGAAATCTAACTGAACAAAACGAACAGAAAAAAAAAAATGAAGATAGGAGGGAGCCTTGCAGTCTTGACCTATTTATTGACTTTTGTAATTTTGCAGGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGGTACGTAAATGATGATATACCGTTACATTTACAGATCTTCAAGTCAATTGCTATATAGCTTTCTGCAACACCATAAATTGTTTCATTTATTTTCATGTCGATAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAGTTAAACACAAAGCTATGGCTACACCTGATGGCTCAGAATCATCAGGTGTCCTATCAAGTATGTTGATATGTAATAAAACCATATTATCAGCAGTGTACTTAAAAGCTTAATCATCCAGGGAGCTTGTTACAATGGGAAAATATTATATAGGAAATGTTGAATCTGCTGAGAACCTTGCACTCTGCTGAAAGGATTACATATATATTTCACTCTTATTTCATATAGTACAATACTTATAAAATCTGTAACCTCTCTCGTCTTCTGTCATTTGAATCCCCTTGTGATTTTGCCTAACAGTTGTGCTTGGATTCTGCTTATTCAAAACAGTTGTGCTGGTCATTGGGTCTCTCTCTCTCTCCTTTTTTTTTTTTTTTTTTTTTTTGTTTCTTTTGTACAAAGTCTTTATCTTCCAAAAGGTGTATAGACACCGAACGTCAAGTCAACTCTAATATCTCCATACACTATATGTATTTTTTAAGGTTGTCTACCCGAATTTGACCATTTCTATGAACGAGGCTCCCGGTAGGACCCTTGTTCACCGTTACTGGAAGGTAGTCGACTCCTAGAAAAGTCAGGCCGATCGCTTTGACGAGCGGCTCGACTCTTGCGCAAGTCAGTCCAGGGGGAAGGCCATTCAAGCTGATCTCTATTGAGTGGCTGTTGTTTCCTAGAACCAAAAGTGTGAGGGCTTGGCCCAATTGATATGACTAGCTGGCTCTATAATTATTGTCCTAAAGGCAGACAACATATCGTAGTTGGATGCTGAACCACACAAATCTTCATAGTCCAACAAGCTACTCCTCTTAAATCCCAAACATCAAATAGTGATATCTTATCATCTTATGAAATGTTGTTGTATGATTTAATACAATAAATGTTTGATTTAATATGTTTTAGATATTAAGGTACTACTTTGATGCTGAGAGACAAAGATGTTCACGGGGCAAGAATGGAGATGACTTCTCATCCCTACGAAATTCTATTTAATTTGGTTGAGATCGGAATTGTAAGGAGAAAATTTGCAAGGTTTGAGTTCCTTGCAGGGAATTTTTTCCTGTTTAATTGTTCTATAAAAAATTCAATGAAATAATTTTTGATAATGAATCCTCCTTTAAATAATTAATTCTGTTTGAAAAATTCTTAAATGTTTTTTTTAGAAAGAATTCTAAATGAAATAAAATTAAATTTCATAGTAAGTTACTTAATTATCCATACATAAGAGTTAAAGAAATGGTTAATACATATCAAAATATTCATACAATATCATTATGCATACATTCAAGTTTAAGTGATTTAGATATATACATATCTTTTATATAGATGTGTGTGTATATATGTATAGTTTTTTTTAAAAAATAATAAAAAAGAAACATGTCGGGGAACGAAATGAGGAATATATTCTCCTTCTCCGTCTCGGTTAGGACGGAGGAAAAGTAAACATATCTAAGTCAGACTCGTTATCTTCTCTCGAAGGTATCACTTTCGCATTTCAAATTTTATTTTATAGTTTTCTACGAAATCTTGATTTCTATATAAAAAAAATTAGTTTGTTATCCATTTAACATTTCTCTTGAATTGTCTCTCCTATACTAATCTTCTGATTTTGTATGTTGTTTGTGGTTTTCAATTTGACTATGATGTCAACTAATTATTATTTTATATTTATGAATATCTGGACTAGTTTCTACAAATAGATTTACCTTACTACACTTATAATTTATTACCAATTCAAGTTCAAAAGAAATACTTTCAAACTAGACAGTTGACTTTTGTTGAACATTTATCTTTGAATTATTCACTTATTTATTAATCAAAGATTAAAATAGAAACATATATTAATTTATAGTACATAAAAATGTTCCTTTTTTTTTTTTTTAAATAATGGCAGGGTCATTAATAATTAATCAAACACATAGATGCAAAATATCCTCTATGATTTTAATGCACAAAATCTTTGTCTACCTAAATTAAAAACTAAGTTAAGAAGAAGTAAACAATACACTTTCCTCCAATTTTAAAATAAAAGAACAGAATCTTGGGAAAAACAAATTCTAATTAAAAAAGTAATTTAATATTAAGACAATGGAATTAGTCACTGTATTAGAGTCAAAAGAGAAGCCTCCATGTGGCTATAAACGTCGTGAAAACAAAACCGTCAAACCAAAAGAATCCAATGGTGATGAAACCATTGAACAAGATCCGACGGCTGTAGAGTAA

mRNA sequence

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTTGTTGAAGTTTCGACTTCAAAAACTGGAAAGCACGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCATAACTGTGATGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCCGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGACAATGGAATTAGTCACTGTATTAGAGTCAAAAGAGAAGCCTCCATGTGGCTATAAACGTCGTGAAAACAAAACCGTCAAACCAAAAGAATCCAATGGTGATGAAACCATTGAACAAGATCCGACGGCTGTAGAGTAA

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTTGTTGAAGTTTCGACTTCAAAAACTGGAAAGCACGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCATAACTGTGATGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCCGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGACAATGGAATTAGTCACTGTATTAGAGTCAAAAGAGAAGCCTCCATGTGGCTATAAACGTCGTGAAAACAAAACCGTCAAACCAAAAGAATCCAATGGTGATGAAACCATTGAACAAGATCCGACGGCTGTAGAGTAA

Protein sequence

MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQTMELVTVLESKEKPPCGYKRRENKTVKPKESNGDETIEQDPTAVE

Homology

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BLAST of HG10008166 vs. NCBI nr
Match: XP_004146682.1 (eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN65160.1 hypothetical protein Csa_019565 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 2.9e-66
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

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BLAST of HG10008166 vs. NCBI nr
Match: XP_008443857.1 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo] >XP_038880020.1 eukaryotic translation initiation factor 5A-2 [Benincasa hispida] >KAA0035077.1 eukaryotic translation initiation factor 5A-2 [Cucumis melo var. makuwa] >TYK03602.1 eukaryotic translation initiation factor 5A-2 [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 8.4e-66
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. NCBI nr
Match: XP_022930431.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_022969168.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita maxima] >XP_023529298.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo] >KAG6587824.1 Eukaryotic translation initiation factor 5A-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035679.1 Eukaryotic translation initiation factor 5A-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.8 bits (665), Expect = 8.4e-66
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. NCBI nr
Match: XP_022135162.1 (eukaryotic translation initiation factor 5A-2-like [Momordica charantia])

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-65
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. NCBI nr
Match: PSS08119.1 (Eukaryotic translation initiation factor 5A-2 [Actinidia chinensis var. chinensis])

HSP 1 Score: 258.1 bits (658), Expect = 5.5e-65
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. ExPASy Swiss-Prot
Match: Q9AXQ5 (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.7e-66
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKTFPQQAG IRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 DNLLTQTME 130
           +NLL Q  +
Sbjct: 121 ENLLKQVKD 129

[Close]

BLAST of HG10008166 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 251.1 bits (640), Expect = 8.8e-66
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKTFPQQAG IRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           +NLL+Q
Sbjct: 121 ENLLSQ 126

[Close]

BLAST of HG10008166 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-65
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLL 125
           DNLL
Sbjct: 121 DNLL 124

[Close]

BLAST of HG10008166 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-65
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLL 125
           DNLL
Sbjct: 121 DNLL 124

[Close]

BLAST of HG10008166 vs. ExPASy Swiss-Prot
Match: Q9AXQ3 (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.3e-65
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFN KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           D LL Q
Sbjct: 121 DTLLNQ 126

[Close]

BLAST of HG10008166 vs. ExPASy TrEMBL
Match: A0A0A0LTB3 (Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_1G256200 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. ExPASy TrEMBL
Match: A0A5A7T0H1 (Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00200 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.1e-66
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. ExPASy TrEMBL
Match: A0A6J1I076 (Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC111468243 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.1e-66
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. ExPASy TrEMBL
Match: A0A6J1EQX3 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111436878 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.1e-66
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. ExPASy TrEMBL
Match: A0A1S3B9T8 (Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103487352 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.1e-66
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQ 127
           DNLLTQ
Sbjct: 121 DNLLTQ 126

[Close]

BLAST of HG10008166 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 233.8 bits (595), Expect = 1.0e-61
Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+S +DAGASKT+PQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLTQ 127
           D LL Q
Sbjct: 121 DTLLQQ 125

[Close]

BLAST of HG10008166 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-59
Identity = 109/126 (86.51%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF+S +DAGASKT+PQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLT+NG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQ 127
           + LLTQ
Sbjct: 121 EALLTQ 125

[Close]

BLAST of HG10008166 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-57
Identity = 105/136 (77.21%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQTMELVTVLES 137
           D L  Q +  V   E+
Sbjct: 121 DGLTAQLLCFVNADEA 135

[Close]

BLAST of HG10008166 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 218.0 bits (554), Expect = 5.8e-57
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQ 127
           D L  Q
Sbjct: 121 DGLTAQ 125

The following BLAST results are available for this feature:

BLAST of HG10008166 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146682.1	2.9e-66	100.00	eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN65160.1 hypo...	[more]
XP_008443857.1	8.4e-66	99.21	PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo] >XP_0388...	[more]
XP_022930431.1	8.4e-66	99.21	eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_0229...	[more]
XP_022135162.1	1.9e-65	98.41	eukaryotic translation initiation factor 5A-2-like [Momordica charantia]	[more]
PSS08119.1	5.5e-65	97.62	Eukaryotic translation initiation factor 5A-2 [Actinidia chinensis var. chinensi...	[more]

BLAST of HG10008166 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AXQ5	6.7e-66	93.02	Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum OX=4081 PE...	[more]
Q9AXJ4	8.8e-66	94.44	Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV...	[more]
P69039	2.0e-65	95.97	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40...	[more]
P69040	2.0e-65	95.97	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI...	[more]
Q9AXQ3	3.3e-65	94.44	Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE...	[more]

BLAST of HG10008166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTB3	1.4e-66	100.00	Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A5A7T0H1	4.1e-66	99.21	Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1I076	4.1e-66	99.21	Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EQX3	4.1e-66	99.21	Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A1S3B9T8	4.1e-66	99.21	Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103487...	[more]

BLAST of HG10008166 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	1.0e-61	88.89	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	1.6e-59	86.51	eukaryotic elongation factor 5A-3	[more]
AT1G26630.2	2.0e-57	77.21	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.1	5.8e-57	81.75	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 85..145 e-value: 1.9E-15 score: 67.3
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 85..128 e-value: 3.7E-15 score: 55.8
None	No IPR available	GENE3D	2.40.50.140		coord: 86..138 e-value: 2.8E-17 score: 64.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..162
None	No IPR available	PANTHER	PTHR11673:SF42	BNAA07G09420D PROTEIN	coord: 1..123
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..85 e-value: 3.4E-43 score: 147.4
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 18..136 e-value: 5.0E-38 score: 127.9
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 1..123
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 50..57
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 86..130
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 15..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008166.1	HG10008166.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
biological_process	GO:0006413	translational initiation
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding