HG10008151 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008151
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cytochrome c oxidase assembly factor 6
Location	Chr10: 20288212 .. 20288874 (-)
RNA-Seq Expression	HG10008151
Synteny	HG10008151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCAATAATAAAATTGAGTCCAATGAGATTGGGCCCAAATCTGAAGCCCAAAACTGTGGAGCGAAATTGGTTGGAACGACGAAAAACCCAGAGAACAAGCAACCATAGCAGCTCCATCTCGGCAGGAACTATGGCTGTCGAAGCTGACGCGCCTGGAAGCTTAGATGAAGTGCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACACGGTTCTCTCTCTCGATCACTTATTCTCTACCATTTCTGTTAGATGAGAACTTTTTTAGTTGTTAATATGGCAATTTGATGCATTTGAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCGTCTTGGGTAAATGTCGTTATTGGAGATTACATTAACATGTTGGTTCTTAGAATCTATGGTCTATTAGGTTTTGATTCATGGTGTTTATGATTTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTCGAGGAGGGGTCCCTTGATACTTCCGCAACCTTACACTTTTAAGCCCACTAGTTAA

mRNA sequence

ATGATTTCAATAATAAAATTGAGTCCAATGAGATTGGGCCCAAATCTGAAGCCCAAAACTGTGGAGCGAAATTGGTTGGAACGACGAAAAACCCAGAGAACAAGCAACCATAGCAGCTCCATCTCGGCAGGAACTATGGCTGTCGAAGCTGACGCGCCTGGAAGCTTAGATGAAGTGCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACACGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCGTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTCGAGGAGGGGTCCCTTGATACTTCCGCAACCTTACACTTTTAAGCCCACTAGTTAA

Coding sequence (CDS)

ATGATTTCAATAATAAAATTGAGTCCAATGAGATTGGGCCCAAATCTGAAGCCCAAAACTGTGGAGCGAAATTGGTTGGAACGACGAAAAACCCAGAGAACAAGCAACCATAGCAGCTCCATCTCGGCAGGAACTATGGCTGTCGAAGCTGACGCGCCTGGAAGCTTAGATGAAGTGCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACACGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCGTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTCGAGGAGGGGTCCCTTGATACTTCCGCAACCTTACACTTTTAAGCCCACTAGTTAA

Protein sequence

MISIIKLSPMRLGPNLKPKTVERNWLERRKTQRTSNHSSSISAGTMAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS

Homology

[Close]

BLAST of HG10008151 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 6.2e-55
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MAVEADA G LDEVHSDVLAESRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT+
Sbjct: 61  ALRAYFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 114

[Close]

BLAST of HG10008151 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 5.3e-54
Identity = 108/114 (94.74%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MAVEADA G LDEVHSDVLA SRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of HG10008151 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-52
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MAVEAD+ G  DEVH+DVL+ESRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of HG10008151 vs. NCBI nr
Match: XP_011655945.1 (uncharacterized protein LOC101212489 isoform X1 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 4.2e-51
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MA EAD+ G  DEVH+DVL+ESRQACY ARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPT+
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of HG10008151 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 7.1e-51
Identity = 100/114 (87.72%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MA+E D  G  +EVH+DVLAE RQACY ARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           A RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of HG10008151 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.6e-54
Identity = 108/114 (94.74%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MAVEADA G LDEVHSDVLA SRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of HG10008151 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.2e-53
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MAVEAD+ G  DEVH+DVL+ESRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of HG10008151 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.2e-53
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MAVEAD+ G  DEVH+DVL+ESRQACY ARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of HG10008151 vs. ExPASy TrEMBL
Match: A0A0A0LTX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.0e-51
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MA EAD+ G  DEVH+DVL+ESRQACY ARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPT+
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of HG10008151 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-51
Identity = 100/114 (87.72%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MA+E D  G  +EVH+DVLAE RQACY ARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 160
           A RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of HG10008151 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-41
Identity = 74/113 (65.49%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MA++  A  + ++VH DVL ++R ACY ARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT 159
             R  FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

[Close]

BLAST of HG10008151 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-41
Identity = 74/113 (65.49%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 46  MAVEADAPGSLDEVHSDVLAESRQACYTARDAFYACVEKESDKKPTEIASVGLIYPAECK 105
           MA++  A  + ++VH DVL ++R ACY ARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 106 ALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT 159
             R  FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

The following BLAST results are available for this feature:

BLAST of HG10008151 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878579.1	6.2e-55	95.61	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]
XP_022134674.1	5.3e-54	94.74	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]
XP_008443871.1	1.7e-52	90.35	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_011655945.1	4.2e-51	87.72	uncharacterized protein LOC101212489 isoform X1 [Cucumis sativus]	[more]
XP_022973432.1	7.1e-51	87.72	cytochrome c oxidase assembly factor 6 [Cucurbita maxima]	[more]

BLAST of HG10008151 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF0	2.6e-54	94.74	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A1S3B9T5	8.2e-53	90.35	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	8.2e-53	90.35	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0LTX1	2.0e-51	87.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1	[more]
A0A6J1I7I2	3.5e-51	87.72	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]

BLAST of HG10008151 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	7.1e-41	65.49	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	7.1e-41	65.49	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 60..136 e-value: 7.9E-9 score: 37.3
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 67..126
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 66..137 e-value: 2.7E-18 score: 65.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..44
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 46..157
None	No IPR available	PANTHER	PTHR47445:SF1	OS08G0441400 PROTEIN	coord: 46..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008151.1	HG10008151.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV