HG10008128 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008128
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Serine/threonine-protein phosphatase 7 long form-like protein
Location	Chr10: 20089463 .. 20089765 (-)
RNA-Seq Expression	HG10008128
Synteny	HG10008128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACTCCTTACTCAGATCCGTCTACCACGGCTGTATCGCCGGCTGCGACGCCGAGATCGACCGCCGTCCTTACCACAAGAACTGCAGCTGTGCTCTTCACGATCGAGATAACAGACGCTGTTCCCACTCCATGTCTAAACACAAATCCGTCTCGTACCCGATTAGACGAGCCTGGAGTGAAGGATGCTTGGCTATGGTTGCTGCTACTGCTGCTTCTGGCATTTCTTCTCCCTCTTCTTCTCCTTCTTCTTCTTCGCCGTCCATGGAGGTTGAAAGCCTTGGATCTTACAAGAGATGA

mRNA sequence

ATGGCCGACTCCTTACTCAGATCCGTCTACCACGGCTGTATCGCCGGCTGCGACGCCGAGATCGACCGCCGTCCTTACCACAAGAACTGCAGCTGTGCTCTTCACGATCGAGATAACAGACGCTGTTCCCACTCCATGTCTAAACACAAATCCGTCTCGTACCCGATTAGACGAGCCTGGAGTGAAGGATGCTTGGCTATGGTTGCTGCTACTGCTGCTTCTGGCATTTCTTCTCCCTCTTCTTCTCCTTCTTCTTCTTCGCCGTCCATGGAGGTTGAAAGCCTTGGATCTTACAAGAGATGA

Coding sequence (CDS)

ATGGCCGACTCCTTACTCAGATCCGTCTACCACGGCTGTATCGCCGGCTGCGACGCCGAGATCGACCGCCGTCCTTACCACAAGAACTGCAGCTGTGCTCTTCACGATCGAGATAACAGACGCTGTTCCCACTCCATGTCTAAACACAAATCCGTCTCGTACCCGATTAGACGAGCCTGGAGTGAAGGATGCTTGGCTATGGTTGCTGCTACTGCTGCTTCTGGCATTTCTTCTCCCTCTTCTTCTCCTTCTTCTTCTTCGCCGTCCATGGAGGTTGAAAGCCTTGGATCTTACAAGAGATGA

Protein sequence

MADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAWSEGCLAMVAATAASGISSPSSSPSSSSPSMEVESLGSYKR

Homology

[Close]

BLAST of HG10008128 vs. NCBI nr
Match: XP_008443899.1 (PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 8.2e-37
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAW 60
           MAD+ LR VYHGCIAG DA IDRRPYHKNCSCALHDRDNRRCSHS+SKHKSVSYPIRRAW
Sbjct: 1   MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61  SEGCLAMVAATAASGISSPSSSPSSSSPSM-EVESLGSYKR 101
           SEGCLAMVAA+AASG+SSP      SSPSM +VESLGSYKR
Sbjct: 61  SEGCLAMVAASAASGVSSP------SSPSMDQVESLGSYKR 95

[Close]

BLAST of HG10008128 vs. NCBI nr
Match: KAG6587850.1 (hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.6 bits (379), Expect = 7.2e-33
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAW 60
           MAD+L  SVYHGCIA CDAEI RRPYHKNC CALHDRDNRRCSHSMSKH +VSYPIRRAW
Sbjct: 1   MADALFGSVYHGCIATCDAEIARRPYHKNCGCALHDRDNRRCSHSMSKHSTVSYPIRRAW 60

Query: 61  SEGCLAMVAATAASGISSPSSSPSSSSPSMEVESLGSYKR 101
           SEGCLAM AA + SGISSP     SSSPSME E LGS +R
Sbjct: 61  SEGCLAM-AAASGSGISSP-----SSSPSMESEGLGSNRR 94

[Close]

BLAST of HG10008128 vs. NCBI nr
Match: KAE8653037.1 (hypothetical protein Csa_019637 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 76/97 (78.35%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAW 60
          MAD+LLR VY+GCI   DAEIDRRPYHKNCSCALHDRDN+RCSHSMSKHKSVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAATAASGISSPSSSPSSSSPSM-EVESLG 97
          SEGCLAMV   AASGISSP      SSPSM ++E +G
Sbjct: 61 SEGCLAMV---AASGISSP------SSPSMDQIEGVG 88

[Close]

BLAST of HG10008128 vs. NCBI nr
Match: XP_007013703.2 (PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao])

HSP 1 Score: 114.0 bits (284), Expect = 7.5e-22
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 2  ADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAWS 61
          AD L RS+Y GCIAGCD  I+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAATAASGISSPSSSPSSS 87
          EGCLAM AA+     SSPSSSP+ S
Sbjct: 66 EGCLAMAAASCH---SSPSSSPAFS 87

[Close]

BLAST of HG10008128 vs. NCBI nr
Match: EOY31322.1 (Uncharacterized protein TCM_038276 [Theobroma cacao])

HSP 1 Score: 114.0 bits (284), Expect = 7.5e-22
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 2  ADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAWS 61
          AD L RS+Y GCIAGCD  I+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAATAASGISSPSSSPSSS 87
          EGCLAM AA+     SSPSSSP+ S
Sbjct: 66 EGCLAMAAASCH---SSPSSSPAFS 87

[Close]

BLAST of HG10008128 vs. ExPASy TrEMBL
Match: A0A1S3B9X6 (uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.0e-37
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAW 60
           MAD+ LR VYHGCIAG DA IDRRPYHKNCSCALHDRDNRRCSHS+SKHKSVSYPIRRAW
Sbjct: 1   MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61  SEGCLAMVAATAASGISSPSSSPSSSSPSM-EVESLGSYKR 101
           SEGCLAMVAA+AASG+SSP      SSPSM +VESLGSYKR
Sbjct: 61  SEGCLAMVAASAASGVSSP------SSPSMDQVESLGSYKR 95

[Close]

BLAST of HG10008128 vs. ExPASy TrEMBL
Match: A0A0A0LWK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.1e-34
Identity = 83/101 (82.18%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAW 60
           MAD+LLR VY+GCI   DAEIDRRPYHKNCSCALHDRDN+RCSHSMSKHKSVSYPIRRAW
Sbjct: 1   MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61  SEGCLAMVAATAASGISSPSSSPSSSSPSM-EVESLGSYKR 101
           SEGCLAMV   AASGISSP      SSPSM +VESLGSYKR
Sbjct: 61  SEGCLAMV---AASGISSP------SSPSMDQVESLGSYKR 92

[Close]

BLAST of HG10008128 vs. ExPASy TrEMBL
Match: A0A061GQ94 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-22
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 2  ADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAWS 61
          AD L RS+Y GCIAGCD  I+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAATAASGISSPSSSPSSS 87
          EGCLAM AA+     SSPSSSP+ S
Sbjct: 66 EGCLAMAAASCH---SSPSSSPAFS 87

[Close]

BLAST of HG10008128 vs. ExPASy TrEMBL
Match: A0A6P5ZAR1 (uncharacterized protein LOC111299002 OS=Durio zibethinus OX=66656 GN=LOC111299002 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.0e-22
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 2  ADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAWS 61
          AD L RS+Y GCI+GCD  I+RRPYH+NC CALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSIYEGCISGCDKGIERRPYHRNCRCALHDKSRGNCPHAFPKSKNVSYPIRRAWS 65

Query: 62 EGCLAMVAATAASGISSPSSSPS 85
          EGCLAM AA+     SSPSSSP+
Sbjct: 66 EGCLAMAAASCH---SSPSSSPA 85

[Close]

BLAST of HG10008128 vs. ExPASy TrEMBL
Match: A0A6J0ZQ85 (uncharacterized protein LOC110411242 OS=Herrania umbratica OX=108875 GN=LOC110411242 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.2e-21
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 2  ADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKHKSVSYPIRRAWS 61
          AD L R +Y GCIAGCD  I+RRPYH+NC CALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRPLYEGCIAGCDIGIERRPYHRNCRCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAATAASGISSPSSSPSSS 87
          EGCLAM AA+     SSPSSSP+ S
Sbjct: 66 EGCLAMAAASCH---SSPSSSPAFS 87

[Close]

BLAST of HG10008128 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-15
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 2  ADSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDR-------DNRRCSHSMSKH---KS 61
          AD + RS++ GCI+G D+ I+RRPYHKNC CALHD+        N+R   S  +H   +S
Sbjct: 3  ADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSES 62

Query: 62 VSYPIRRAWSEGCLAMVAATAASGISSPSSSPSSSS 88
          +S+PIRR+WSEG +  +   ++S  SS   S SSSS
Sbjct: 63 ISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSS 98

[Close]

BLAST of HG10008128 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-14
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 3  DSLLRSVYHGCIAGCDAEIDRRPYHKNCSCALHDRDNRRCSHSMSKH---KSVSYPIRRA 62
          D + R+++ GCI+ CD+ I RRPYHKNC CALH+R     S +  +H   + V +PI+R+
Sbjct: 7  DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 63 WSEG---CLAMVAATAASGISSPSSSPSSSS 88
          WSEG    L + +++++S + S SSS S S+
Sbjct: 67 WSEGNSLALHLASSSSSSNLQSLSSSSSIST 97

The following BLAST results are available for this feature:

BLAST of HG10008128 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443899.1	8.2e-37	84.16	PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo]	[more]
KAG6587850.1	7.2e-33	79.00	hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653037.1	1.1e-30	78.35	hypothetical protein Csa_019637 [Cucumis sativus]	[more]
XP_007013703.2	7.5e-22	67.06	PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao]	[more]
EOY31322.1	7.5e-22	67.06	Uncharacterized protein TCM_038276 [Theobroma cacao]	[more]

BLAST of HG10008128 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9X6	4.0e-37	84.16	uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=...	[more]
A0A0A0LWK0	3.1e-34	82.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1	[more]
A0A061GQ94	3.6e-22	67.06	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1	[more]
A0A6P5ZAR1	8.0e-22	65.06	uncharacterized protein LOC111299002 OS=Durio zibethinus OX=66656 GN=LOC11129900...	[more]
A0A6J0ZQ85	5.2e-21	64.71	uncharacterized protein LOC110411242 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]

BLAST of HG10008128 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46490.1	1.9e-15	46.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35110.1	8.0e-14	42.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..100
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 2..92
None	No IPR available	PANTHER	PTHR35121:SF2	BNAC04G52100D PROTEIN	coord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008128.1	HG10008128.1	mRNA