HG10008118 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008118
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 20008047 .. 20010284 (+)
RNA-Seq Expression	HG10008118
Synteny	HG10008118

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTATAAAGCAAAGAAATTCTTAAACGTAAGCGTGTTTATAAACTTAATTTTTACATTAAAATCAATTGGTTATCAGATGAAATGAAGTTTTAACTTTTTTGGTGGTTTTTTTTTTTTTTTTTTTTTGGCGCAAAATCTCTAATGTTGATATGGCTATTACATTAAATGCAGGAAGAGGAAAGTCCACTCATAGTAGAAGGTTTTAAGAAAATTACTCTATGTGAAAATGGGCATTGTAATTCAGGTATGCTGTTAGTGAACACTAGTGCAAATTTAAATCTTTTGATGACTTTTTTTTTTTTTTTTTTGTGTCTTTTTAGTTTTTTGATTTCGAAAAGTCAACTTATAAATTATAATATTTGTTTTGTTATTGTTGATGTCAAATTTTGGCTAAGGAAAAACGTATCTGACATTCATGTGACAACAACAATAAATTTATAATTTAAGGAAGAGAGGACCTGCAAAACAAATAAAAATGGCTCTGATGTCTAAGTCTGAAAAAGAAGAAGTTAGAAGTTTTTCAATACCTCATATGGAGTCATAATGGTTTATTTATAGAAGATTTGATCTCGAGTTTATCTTAATCCTAATAGGATAAGAGATTTAACCTTCACAGGATTAGGATATCAAATTTTCTTAATCCCAAGCAGGCTAAATCAAATCTTATCTTATTATATTTTATCTTACCTTTATCTTGATTTTGATTTTATTCTGCTGGATCAAAATTCACTCCTAACAGTTATGTTTTTATACTTAAAAGTCCAAATTTGTAAAATGAAAAAGTAGTTTTTTTTAAGTTAAAATTCAAAGGTATTTAAACTAACAAGTGAAAAATATATATATCTAAGTAAGCAAGTGAAAATTAAACCCCCAAAAAAGAATAAAATGTTCAAATTTGATGCATTAAATTTGTGTCGAGAAACATTAATAAAACATCATTAAAAAAAACAACTAAAATGGGACATAATTTTCAGACATTAATATTGTATACGTCTTGAAATCTGAAGTGGGTTTGACATTTATGATGCAGGAAACAATAGAAAACTTCTGACTGCGACTTCACCAATACCATCATCTTCAACAAGGGTTAGTCATCCATCACTTCCAACATTTTTAGAAACATTTTTAAAAACATTCATCAATCATTTACTCAAATTAAAACTGCTTGTGTTTTTCACAATTTTTTATGGTTGTTATTATGTAAACATTTGAATAAGTAAAAATGGATATTAATTGAAGAAGAAATAACATTGTAAGGGTGATCTCTCTAGAACGCTTGTTCTGATATCATCTTAAATTATTGATTGACTCAAAAAACTTAAATCAACGAAGTGAAAGAAAATTTAATATTATATCATCTAACACTTTCAAAACAAAATTTTTAAAAACTACGTATTTTTATTTAGGCTTATTTGATAACCATTCGTTTAGCCTGTTTTCTCTCAACTTCATACCATGATTTTCATCCGTAAAAGAGTTAGTTGAAATCTTAGCCAAATTTCAAAATAAATCTTTATAGAGTTAAGTGGAAGAGGTGTTTATAGAATTAATTTTCAAAAACTAATAATCATAAACCCAAATACTTTTTATAAGGGAAATTTTCACAAATAGAAAAAATGTCAAACTATTTACAGAAAATAGCGAAAAAAAACACTGTTAGACATTAATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATCATTTATATCTATGATAGACCCTAATAGACTTCGTTCTATCAGCGTCTATCACAACTATCTAAAAATTTTACTATTTTCTGTAAATAGTTTCCCTTATTTTTTTAAAAAAAAAAAAAAATTCTCCTTTTTATAAACTTAAATTTAGAACCCTAAGAACTTAAATGAACTAAAGTTGTTAGCTTTAAAGTTGAAATCTAATTCCATCCATAGATACATATTTTATGATTTGAAACACAAATCTTCAACATTCTTTTTGATCATAATATAATCAATTACTAAAGATTTTAACACAAATCATTCAAAACCCAAGAAACTTAATGATTGAATTAATAGTTTTTGTGCTCCTAATACAGAATAATGATGAAGAAGCAAACAAAAAGGGCAAGCCCATGTCATCAAATAAAGAAGAACCAAGTGTGAAAAAGAAGAACAATTTGGAGAATTCAGAGGCAGATCAACTTGACCTTGTAGACATTGCAGAAATGGACTATTCTCCAGCAAAAAGAAAGCCTCCAATACATAACTGA

mRNA sequence

ATGGATTATAAAGCAAAGAAATTCTTAAACGAAGAGGAAAGTCCACTCATAGTAGAAGGTTTTAAGAAAATTACTCTATGTGAAAATGGGCATTGTAATTCAGGAAACAATAGAAAACTTCTGACTGCGACTTCACCAATACCATCATCTTCAACAAGGAATAATGATGAAGAAGCAAACAAAAAGGGCAAGCCCATGTCATCAAATAAAGAAGAACCAAGTGTGAAAAAGAAGAACAATTTGGAGAATTCAGAGGCAGATCAACTTGACCTTGTAGACATTGCAGAAATGGACTATTCTCCAGCAAAAAGAAAGCCTCCAATACATAACTGA

Coding sequence (CDS)

ATGGATTATAAAGCAAAGAAATTCTTAAACGAAGAGGAAAGTCCACTCATAGTAGAAGGTTTTAAGAAAATTACTCTATGTGAAAATGGGCATTGTAATTCAGGAAACAATAGAAAACTTCTGACTGCGACTTCACCAATACCATCATCTTCAACAAGGAATAATGATGAAGAAGCAAACAAAAAGGGCAAGCCCATGTCATCAAATAAAGAAGAACCAAGTGTGAAAAAGAAGAACAATTTGGAGAATTCAGAGGCAGATCAACTTGACCTTGTAGACATTGCAGAAATGGACTATTCTCCAGCAAAAAGAAAGCCTCCAATACATAACTGA

Protein sequence

MDYKAKKFLNEEESPLIVEGFKKITLCENGHCNSGNNRKLLTATSPIPSSSTRNNDEEANKKGKPMSSNKEEPSVKKKNNLENSEADQLDLVDIAEMDYSPAKRKPPIHN

Homology

[Close]

BLAST of HG10008118 vs. NCBI nr
Match: XP_038876887.1 (uncharacterized protein LOC120069249 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 4.6e-33
Identity = 87/110 (79.09%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 11  EEESPLIVEGFKKITLCENGHCNSGNNRKLLTATSPIPSS---STRNNDEEANKKGKPM- 70
           EEES LIVEGF+KITLCENGHCNSGNNRKLLTATSPIPSS   STRNN  E NKKG PM 
Sbjct: 48  EEESRLIVEGFRKITLCENGHCNSGNNRKLLTATSPIPSSPTPSTRNN--EGNKKGNPMS 107

Query: 71  SSNKEEPSVKKKNNLENSEA------DQLDLVDIAEMDYSPAKRKPPIHN 111
           SS+KE+PSVK+K+NLENSEA        LDL+DIAEMDYSPAKRKPPIHN
Sbjct: 108 SSHKEDPSVKRKDNLENSEAVSKNLEANLDLIDIAEMDYSPAKRKPPIHN 155

[Close]

BLAST of HG10008118 vs. NCBI nr
Match: KAA0050046.1 (uncharacterized protein E6C27_scaffold675G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 80/115 (69.57%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 7   KFLNEEESPLIVEGFKKITLCENGHCNSGNNRKLLTATS-PIPSS---STRNNDEEANKK 66
           K L EE    +VEGF+K T+CENGHCNSGNNRKL+T T+ PIPSS   STRNN+EE  KK
Sbjct: 43  KTLEEE----VVEGFRKTTICENGHCNSGNNRKLMTVTTPPIPSSPTPSTRNNEEENYKK 102

Query: 67  GKPMSSNKEE-PSVKKKNNLENSEA------DQLDLVDIAEMDYSPAKRKPPIHN 111
           G P SSNKEE  SVKKK++LENSEA        LDL+DIAEMDYSPAKRKPPIHN
Sbjct: 103 GNPKSSNKEESSSVKKKDDLENSEAVSKNLEAALDLIDIAEMDYSPAKRKPPIHN 153

[Close]

BLAST of HG10008118 vs. NCBI nr
Match: XP_004146738.1 (uncharacterized protein LOC101204556 [Cucumis sativus] >KGN65206.1 hypothetical protein Csa_019538 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 7.4e-23
Identity = 71/104 (68.27%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 18  VEGFKKITLCENGHCNSGNNRKLLTATS-PIPSSST---RNNDEEANKKGKPMSSNKEE- 77
           VEG K+ T+CENGHCNSGNNRKL+T T+ PIPSS T   RNN+    K   P SSNKEE 
Sbjct: 50  VEGLKETTICENGHCNSGNNRKLMTVTAPPIPSSPTPSIRNNEGNYKKGISPKSSNKEES 109

Query: 78  PSVKKKNNLENSEA------DQLDLVDIAEMDYSPAKRKPPIHN 111
            SVKKK+NLENSEA        LDL+DIAEMDYSPAKRKPPIHN
Sbjct: 110 SSVKKKDNLENSEAVSKNLEAALDLIDIAEMDYSPAKRKPPIHN 153

[Close]

BLAST of HG10008118 vs. NCBI nr
Match: XP_022135297.1 (uncharacterized protein LOC111007293 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 74/113 (65.49%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 12  EESPLIVEGFKKI-TLCENGHCNSGNNRKLLTATSPIPS--SSTRNNDEEAN-KKGKPMS 71
           EESPLI EGF KI TLC  G CNSGN RKLLTATSP  S  S TRNN+E  N K+G P+ 
Sbjct: 82  EESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSSTPSITRNNEEGENFKRGSPI- 141

Query: 72  SNKEEPSVKKKNNLENSEA----------DQLDLVDIAEMDYSPAKRKPPIHN 111
           S KEE SVK K  L+NSEA             DLVDIAEMDYSPAKRKPPIHN
Sbjct: 142 SKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAKRKPPIHN 193

[Close]

BLAST of HG10008118 vs. NCBI nr
Match: XP_022135362.1 (uncharacterized protein LOC111007333 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 74/113 (65.49%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 12  EESPLIVEGFKKI-TLCENGHCNSGNNRKLLTATSPIPS--SSTRNNDEEAN-KKGKPMS 71
           EESPLI EGF KI TLC  G CNSGN RKLLTATSP  S  S TRNN+E  N K+G P+ 
Sbjct: 43  EESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSSTPSITRNNEEGENFKRGSPI- 102

Query: 72  SNKEEPSVKKKNNLENSEA----------DQLDLVDIAEMDYSPAKRKPPIHN 111
           S KEE SVK K  L+NSEA             DLVDIAEMDYSPAKRKPPIHN
Sbjct: 103 SKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAKRKPPIHN 154

[Close]

BLAST of HG10008118 vs. ExPASy TrEMBL
Match: A0A5A7U792 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00250 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 80/115 (69.57%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 7   KFLNEEESPLIVEGFKKITLCENGHCNSGNNRKLLTATS-PIPSS---STRNNDEEANKK 66
           K L EE    +VEGF+K T+CENGHCNSGNNRKL+T T+ PIPSS   STRNN+EE  KK
Sbjct: 43  KTLEEE----VVEGFRKTTICENGHCNSGNNRKLMTVTTPPIPSSPTPSTRNNEEENYKK 102

Query: 67  GKPMSSNKEE-PSVKKKNNLENSEA------DQLDLVDIAEMDYSPAKRKPPIHN 111
           G P SSNKEE  SVKKK++LENSEA        LDL+DIAEMDYSPAKRKPPIHN
Sbjct: 103 GNPKSSNKEESSSVKKKDDLENSEAVSKNLEAALDLIDIAEMDYSPAKRKPPIHN 153

[Close]

BLAST of HG10008118 vs. ExPASy TrEMBL
Match: A0A0A0LYZ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264570 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23
Identity = 71/104 (68.27%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 18  VEGFKKITLCENGHCNSGNNRKLLTATS-PIPSSST---RNNDEEANKKGKPMSSNKEE- 77
           VEG K+ T+CENGHCNSGNNRKL+T T+ PIPSS T   RNN+    K   P SSNKEE 
Sbjct: 50  VEGLKETTICENGHCNSGNNRKLMTVTAPPIPSSPTPSIRNNEGNYKKGISPKSSNKEES 109

Query: 78  PSVKKKNNLENSEA------DQLDLVDIAEMDYSPAKRKPPIHN 111
            SVKKK+NLENSEA        LDL+DIAEMDYSPAKRKPPIHN
Sbjct: 110 SSVKKKDNLENSEAVSKNLEAALDLIDIAEMDYSPAKRKPPIHN 153

[Close]

BLAST of HG10008118 vs. ExPASy TrEMBL
Match: A0A6J1C2B2 (uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007293 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 74/113 (65.49%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 12  EESPLIVEGFKKI-TLCENGHCNSGNNRKLLTATSPIPS--SSTRNNDEEAN-KKGKPMS 71
           EESPLI EGF KI TLC  G CNSGN RKLLTATSP  S  S TRNN+E  N K+G P+ 
Sbjct: 82  EESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSSTPSITRNNEEGENFKRGSPI- 141

Query: 72  SNKEEPSVKKKNNLENSEA----------DQLDLVDIAEMDYSPAKRKPPIHN 111
           S KEE SVK K  L+NSEA             DLVDIAEMDYSPAKRKPPIHN
Sbjct: 142 SKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAKRKPPIHN 193

[Close]

BLAST of HG10008118 vs. ExPASy TrEMBL
Match: A0A6J1C2H1 (uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007333 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 74/113 (65.49%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 12  EESPLIVEGFKKI-TLCENGHCNSGNNRKLLTATSPIPS--SSTRNNDEEAN-KKGKPMS 71
           EESPLI EGF KI TLC  G CNSGN RKLLTATSP  S  S TRNN+E  N K+G P+ 
Sbjct: 43  EESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSSTPSITRNNEEGENFKRGSPI- 102

Query: 72  SNKEEPSVKKKNNLENSEA----------DQLDLVDIAEMDYSPAKRKPPIHN 111
           S KEE SVK K  L+NSEA             DLVDIAEMDYSPAKRKPPIHN
Sbjct: 103 SKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDIAEMDYSPAKRKPPIHN 154

[Close]

BLAST of HG10008118 vs. ExPASy TrEMBL
Match: A0A6J1E3V7 (uncharacterized protein LOC111025844 OS=Momordica charantia OX=3673 GN=LOC111025844 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-17
Identity = 67/112 (59.82%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 12  EESPLIVEGFKKI-TLCENGHCNSGNNRKLLTATSPIPS--SSTRNNDEEANKKGKPMSS 71
           EESPLI EGF KI TLC  G CNSGN RKLLTATSP  S  S TRNNDE  N +     S
Sbjct: 43  EESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSSTPSITRNNDEGGNFRRANPIS 102

Query: 72  NKEEPSVKKKNNLENSEA----------DQLDLVDIAEMDYSPAKRKPPIHN 111
            KEE SVK K  L+NSEA             DL DIAEMDYS A+ KPPIH+
Sbjct: 103 KKEELSVKDKKELDNSEAVSENLEAGQEHNPDLGDIAEMDYSLARGKPPIHH 154

The following BLAST results are available for this feature:

BLAST of HG10008118 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876887.1	4.6e-33	79.09	uncharacterized protein LOC120069249 [Benincasa hispida]	[more]
KAA0050046.1	2.2e-27	69.57	uncharacterized protein E6C27_scaffold675G00250 [Cucumis melo var. makuwa]	[more]
XP_004146738.1	7.4e-23	68.27	uncharacterized protein LOC101204556 [Cucumis sativus] >KGN65206.1 hypothetical ...	[more]
XP_022135297.1	1.2e-20	65.49	uncharacterized protein LOC111007293 [Momordica charantia]	[more]
XP_022135362.1	1.2e-20	65.49	uncharacterized protein LOC111007333 [Momordica charantia]	[more]

BLAST of HG10008118 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U792	1.1e-27	69.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LYZ1	3.6e-23	68.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264570 PE=4 SV=1	[more]
A0A6J1C2B2	5.7e-21	65.49	uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1C2H1	5.7e-21	65.49	uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1E3V7	5.0e-17	59.82	uncharacterized protein LOC111025844 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of HG10008118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..54
None	No IPR available	PANTHER	PTHR33743:SF19	SUBFAMILY NOT NAMED	coord: 22..110
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 22..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008118.1	HG10008118.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity