HG10008103 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008103
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr10: 19757057 .. 19757302 (-)
RNA-Seq ExpressionHG10008103
SyntenyHG10008103
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACATACCGCGCCAGTGCCTGATCCATTCACAACAGAGGATTTTTCATTGTTGGACTGCGCATCGTTTATTTCTGATGCAACGAAATGTGTGATTGATGTGATGAAAAATGCGATTGCTCCTCATCCGTCATGTTGCAAAGTCATTTCTAAGCTCAAGGATTGTTCCTCTGAGTTTCTCAAAAACGTTCCTTCTGCTGACATGATTTTGATTAAAGGCATTTGTGCTTTGTGGGGTGTTTGA

mRNA sequence

ATGGCACATACCGCGCCAGTGCCTGATCCATTCACAACAGAGGATTTTTCATTGTTGGACTGCGCATCGTTTATTTCTGATGCAACGAAATGTGTGATTGATGTGATGAAAAATGCGATTGCTCCTCATCCGTCATGTTGCAAAGTCATTTCTAAGCTCAAGGATTGTTCCTCTGAGTTTCTCAAAAACGTTCCTTCTGCTGACATGATTTTGATTAAAGGCATTTGTGCTTTGTGGGGTGTTTGA

Coding sequence (CDS)

ATGGCACATACCGCGCCAGTGCCTGATCCATTCACAACAGAGGATTTTTCATTGTTGGACTGCGCATCGTTTATTTCTGATGCAACGAAATGTGTGATTGATGTGATGAAAAATGCGATTGCTCCTCATCCGTCATGTTGCAAAGTCATTTCTAAGCTCAAGGATTGTTCCTCTGAGTTTCTCAAAAACGTTCCTTCTGCTGACATGATTTTGATTAAAGGCATTTGTGCTTTGTGGGGTGTTTGA

Protein sequence

MAHTAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSSEFLKNVPSADMILIKGICALWGV
Homology
BLAST of HG10008103 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-28
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1   MAHTAPV--PDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSS 60
           MAHT  +   DPFT E+FSLL C SFIS+AT C++DVMKNA+APHPSCCK  SKL DCSS
Sbjct: 22  MAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMKNAVAPHPSCCKAFSKLNDCSS 81

Query: 61  EFLKNVPSADMILIKGICALWGV 82
           EFLK +PSADMILIKGICALWGV
Sbjct: 82  EFLKGIPSADMILIKGICALWGV 104

BLAST of HG10008103 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 5.6e-28
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1   MAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSS 60
           +AHT  A   DPFT E+ SLL C SFIS+ATKCVIDVMKNA+APHPSCCK  SKL DCS 
Sbjct: 22  IAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSP 81

Query: 61  EFLKNVPSADMILIKGICALWGV 82
           EFLK +PSADMILIKGICALWGV
Sbjct: 82  EFLKGIPSADMILIKGICALWGV 104

BLAST of HG10008103 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 1   MAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSS 60
           +AHT  A   DPFT E  SLL C SFIS+ATKCVIDVMKNA+APHPSCCK  SKL DCS 
Sbjct: 22  IAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSP 81

Query: 61  EFLKNVPSADMILIKGICALWGV 82
           EFLK +PSADMILIKGICALWGV
Sbjct: 82  EFLKGIPSADMILIKGICALWGV 104

BLAST of HG10008103 vs. NCBI nr
Match: KAG6589812.1 (hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 0

Query: 1  MAHTAPVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSSEF 60
          +A  A  PDPF  E FSL  C S +S+ TKCV+DVMK A+APHPSCC+ ISKL  CSS F
Sbjct: 14 LASPAMAPDPFAAEGFSLFGCTSAVSEMTKCVVDVMKQAVAPHPSCCRAISKLNRCSSVF 73

Query: 61 LKNVPSADMILIKGICALWGV 82
          LK+VPSADM LIK +CALWGV
Sbjct: 74 LKDVPSADMFLIKTVCALWGV 94

BLAST of HG10008103 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.1e-22
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 12  TTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSSEFLKNVPSADMIL 71
           T+EDFSL  C SF+  ATKCVIDV+KNA+APHPSCC+ IS+L DCSS+FLK++PS+DMIL
Sbjct: 37  TSEDFSLFPCISFVPKATKCVIDVLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMIL 96

Query: 72  IKGICALWGV 82
           +K ICA WGV
Sbjct: 97  VKSICASWGV 106

BLAST of HG10008103 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1   MAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSS 60
           +AHT  A   DPFT E+ SLL C SFIS+ATKCVIDVMKNA+APHPSCCK  SKL DCS 
Sbjct: 22  IAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSP 81

Query: 61  EFLKNVPSADMILIKGICALWGV 82
           EFLK +PSADMILIKGICALWGV
Sbjct: 82  EFLKGIPSADMILIKGICALWGV 104

BLAST of HG10008103 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.1e-28
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 1   MAHT--APVPDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSS 60
           +AHT  A   DPFT E  SLL C SFIS+ATKCVIDVMKNA+APHPSCCK  SKL DCS 
Sbjct: 22  IAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSP 81

Query: 61  EFLKNVPSADMILIKGICALWGV 82
           EFLK +PSADMILIKGICALWGV
Sbjct: 82  EFLKGIPSADMILIKGICALWGV 104

BLAST of HG10008103 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 12  TTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSSEFLKNVPSADMIL 71
           T+EDFSL  C SF+  ATKCVIDV+KNA+APHPSCC+ IS+L DCSS+FLK++PS+DMIL
Sbjct: 37  TSEDFSLFPCISFVPKATKCVIDVLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMIL 96

Query: 72  IKGICALWGV 82
           +K ICA WGV
Sbjct: 97  VKSICASWGV 106

BLAST of HG10008103 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.5e-22
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 12  TTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSSEFLKNVPSADMIL 71
           T+EDFSL  C SF+  ATKCVIDV+KN +APHPSCC+ I++L DCSS+FLK++PS DMIL
Sbjct: 37  TSEDFSLFPCISFVPKATKCVIDVLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMIL 96

Query: 72  IKGICALWGV 82
           +K ICA WGV
Sbjct: 97  VKSICASWGV 106

BLAST of HG10008103 vs. ExPASy TrEMBL
Match: A0A5A7U904 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00650 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 2   AHTAPV-PDPFTTEDFSLLDCASFISDATKCVIDVMKNAIAPHPSCCKVISKLKDCSSEF 61
           A  AP  PDPF TED S   C SF+ +ATKC+IDV K+ IAPHP+CCK ISKLK CSS F
Sbjct: 33  AAVAPTQPDPFLTEDISFFPCFSFVPEATKCMIDVFKHPIAPHPTCCKAISKLKSCSSSF 92

Query: 62  LKNVPSADMILIKGICALWG 81
              +PSADMILIK +C  WG
Sbjct: 93  FNGIPSADMILIKSVCTSWG 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8653021.11.5e-2875.90hypothetical protein Csa_004567 [Cucumis sativus][more]
TYK10330.15.6e-2877.11hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa][more]
KAA0050078.11.3e-2777.11hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa][more]
KAG6589812.11.9e-2366.67hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK10345.12.1e-2271.43hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CG412.7e-2877.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4836.1e-2877.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CFS61.0e-2271.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9B08.5e-2268.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9041.1e-2163.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008103.1HG10008103.1mRNA