HG10008030 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008030
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosome biogenesis regulatory protein
Location	Chr10: 18856926 .. 18859778 (-)
RNA-Seq Expression	HG10008030
Synteny	HG10008030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACCCAGCAGCAAGTTCAGGTCGACATTGGTCATCTCATGGCGCTCAATCCTCACCACAATCTTATTTCCCCGCCGTCCTCCAGGTTAGTCTCTTCACCTTCCGACAATCTCTCCTGCAAAGCACGTATAAATCAGCTGTTGTTGCTACACGGATTAGGTTCGCATTGTTTCGGAAAATTTTCACTCTGAATTCAATGGGGCTTTTCGTTTGAGTTTCTGGTACTGCTCTTTCGTTTCTCTTGATTGACATCTTTGAACTGGATTTTGGCTTTTGAGAAACAATGCCTTGAAATTCTGTTTGTTTGATTATTATTGACTATATGTTTCGATAAACTACTGAAAACATGTTATTGAAAAGAACTCGATAATTAGAGAAAACTATGATGTCCTCAATATCTGAACCTACCATCTTTGAGGGTTTTGGTTGTTTAAAATAGGTTAAATTACAAATTTGCTCCTATGGTTTGATAAAACGACTATTTATGAGAATATTATCCAACGAAACCATAGAGACTATTTATAGGGATTGAATTCACAATTTTAAAATCATAGGACTAAATTTGAACCTTTTTAGGACACAATTTGGCCTTTAGAATTAAGTACATTATTTAAACACATTGGCACATACATACATATCTATGTTATTTGAAGAGAATCTTTACTGTTTTTGGTTTGTTACTTTTATAATTACAGGGAGGAGTTAGTGAATGAATGCATACAGAAGGGTACGGAGCTAGTTCAAGCTATTGCGAATGAACTTTTCTTTCTGCCCTCAACTGAAGACAGAGATGGTCCTCTTGTGGAGTTGCCTCCACCTAAAACAAGATTGCCTAGGGAGAAGCATGTAAGCCCTTTAATATTTAATATTTTTGTTTATCTTCTCAATGTCGCTTTTAAACTATGGATGTTTACATTTTTGGTTAATGTAATTATTTTCTTGCTTTCCAGCTTCCAAGGCCTAATCCTCCTACAAAATGGGAACTTTTTGCTAAAAAAAAAGGTTGGCCATTTTTGTTCTGCTTTCATCTGTTTTTGTGCTGTTTTGTTTTTTTATTGAAATATTCATATTTCCAATCATTCAATTGTGTGGCTTGAATTGAATTGAGCTGAAAGGCTGACTTGCTGTAAAGGAAAAAACTGGTAAAAAGAGGCATACTCCAGTCAAATACAATACTTTGGAATTGGGAGTTTCTTGGGTGGGATTTAATTTTAGTACTTTGTGACTTTTGCAGGTATAAAGATCATAAAAAGAGGTAAGAATGTGTTTGATGAACAAACTTGTACATGGAAGCGTCGCTATGGTTATGATCGGGCAAATGATGAGAAGAACATACCCATCATTGCGTCCAAGATGACTGATGGTATTGTTTAATATAACCTTGCATTTTAAGATGAGCCACTTTTCTTTTTGTTACTTGCATGTCTTTTTATCTTATTGCTTGTTGTTAAATTTCTGAACATGATAACTTTGACAGAGATAATTTGAATATCAATTATTTATAATACTTGCGACCCATGCTCAATTAATACAAATCTAGCCCATTAAGTATCATGCTTTTTGTTGCAGAGCCGGGTGTGGATCCCTTTGCCGAGAGGCAAGCAAAAAAGAGGCAACGAATTGAAAAGCAAGAAAAGAATCGCTTACAGAATCTGAAACAAGCTGCAAAAATTGGTGCTTTGCCAAGGTTTTATTCTCTTTTCACAGTTATTGGGTGTTGTTCAAGTAACTAGACAATATATCCTCACGTTGCAGACCTTCATTTCCCTTTTCTCCTTCCTACTGGTACAAGAATATTATACCATGCTAATGCGTACATTTGGGTCATTAAATTTCATCGATAATGTTGTTTGGAGCATTCGACCACAAATTGTACCAGTTACCCATCGATTTGTCCCATTCGTTTCTGAAAATATCAGATTGTCTTAAATCCATCTTTTGATTTTCATCATTTTTCTGTTGTATATAACCAAATTGATTAAACTCATGCAGCCACGTTCAACTAGCAGCAACTGCTTTGCCCATAACAGGGACACAAGCTGCAACAAAGAAAATCACAAAAGATGAGCTTGGACATGTGGCTGGAATGGCTGCAACCGCAACAGCTAGTGGCGGAAAATTCAACAAGAAGTTGCCCGGGGAAAAGCCTCAAAAGCATGAAGGAAAATATCGCAAGGTTAACTAAGCAAACCTTTTCCATGGCTAAAATTTAGATCTCAATGATTATATCATTGGTAGGAGTCTATCGCTGATAGGAGTTTATTAGCGATGAAGTCTATCATTGATAGATTTTGCTATAGTTGTAATATAAGATGTTGCTATACACTTAATTATTAACTCTAGAAGTGCTACCCACTCCTATTACCAAATATATATATATATATATATAACAATCTTTCTACTTGGCATGATGGGGTGTATTATATATATTATATACTATCACAAAGTTGCATATTTTGTTCTTCGTTTACGTGCAGTTTTTGCCTGCTGTGGAAGGAATGGGTGTTGGCTCTCAAGAAAAGGAGCAAACTGAGAAAGTCCTGAACCGACTAATATCCAAGAATTCACATGAGATACTAAACATCAATAAGGTCTTCTTCTTTTTAGTTCTTTGTTGAAATTAACCAACATTTTCTTCATTACTCCATTGAAATTTGTGTCTAATGGTCTTCCTTCTCCAATTATCCTGAGTATAGGCCGTCAACATGTGCAATGTGAAAAGAGAAAAGAGGCGAACACATGAAGGCAGGAAGCCTTCATCATCAACATCGAACAAGTTGAAACCAAATAAGAAACTTCAAAAGAAGTCACTGAAGAAGGGACCATCGAAGAAGGGAAAGGCAAAATGA

mRNA sequence

ATGGAGACCCAGCAGCAAGTTCAGGTCGACATTGGTCATCTCATGGCGCTCAATCCTCACCACAATCTTATTTCCCCGCCGTCCTCCAGGGAGGAGTTAGTGAATGAATGCATACAGAAGGGTACGGAGCTAGTTCAAGCTATTGCGAATGAACTTTTCTTTCTGCCCTCAACTGAAGACAGAGATGGTCCTCTTGTGGAGTTGCCTCCACCTAAAACAAGATTGCCTAGGGAGAAGCATCTTCCAAGGCCTAATCCTCCTACAAAATGGGAACTTTTTGCTAAAAAAAAAGGTATAAAGATCATAAAAAGAGGTAAGAATGTGTTTGATGAACAAACTTGTACATGGAAGCGTCGCTATGGTTATGATCGGGCAAATGATGAGAAGAACATACCCATCATTGCGTCCAAGATGACTGATGAGCCGGGTGTGGATCCCTTTGCCGAGAGGCAAGCAAAAAAGAGGCAACGAATTGAAAAGCAAGAAAAGAATCGCTTACAGAATCTGAAACAAGCTGCAAAAATTGGTGCTTTGCCAAGCCACGTTCAACTAGCAGCAACTGCTTTGCCCATAACAGGGACACAAGCTGCAACAAAGAAAATCACAAAAGATGAGCTTGGACATGTGGCTGGAATGGCTGCAACCGCAACAGCTAGTGGCGGAAAATTCAACAAGAAGTTGCCCGGGGAAAAGCCTCAAAAGCATGAAGGAAAATATCGCAAGTTTTTGCCTGCTGTGGAAGGAATGGGTGTTGGCTCTCAAGAAAAGGAGCAAACTGAGAAAGTCCTGAACCGACTAATATCCAAGAATTCACATGAGATACTAAACATCAATAAGGCCGTCAACATGTGCAATGTGAAAAGAGAAAAGAGGCGAACACATGAAGGCAGGAAGCCTTCATCATCAACATCGAACAAGTTGAAACCAAATAAGAAACTTCAAAAGAAGTCACTGAAGAAGGGACCATCGAAGAAGGGAAAGGCAAAATGA

Coding sequence (CDS)

ATGGAGACCCAGCAGCAAGTTCAGGTCGACATTGGTCATCTCATGGCGCTCAATCCTCACCACAATCTTATTTCCCCGCCGTCCTCCAGGGAGGAGTTAGTGAATGAATGCATACAGAAGGGTACGGAGCTAGTTCAAGCTATTGCGAATGAACTTTTCTTTCTGCCCTCAACTGAAGACAGAGATGGTCCTCTTGTGGAGTTGCCTCCACCTAAAACAAGATTGCCTAGGGAGAAGCATCTTCCAAGGCCTAATCCTCCTACAAAATGGGAACTTTTTGCTAAAAAAAAAGGTATAAAGATCATAAAAAGAGGTAAGAATGTGTTTGATGAACAAACTTGTACATGGAAGCGTCGCTATGGTTATGATCGGGCAAATGATGAGAAGAACATACCCATCATTGCGTCCAAGATGACTGATGAGCCGGGTGTGGATCCCTTTGCCGAGAGGCAAGCAAAAAAGAGGCAACGAATTGAAAAGCAAGAAAAGAATCGCTTACAGAATCTGAAACAAGCTGCAAAAATTGGTGCTTTGCCAAGCCACGTTCAACTAGCAGCAACTGCTTTGCCCATAACAGGGACACAAGCTGCAACAAAGAAAATCACAAAAGATGAGCTTGGACATGTGGCTGGAATGGCTGCAACCGCAACAGCTAGTGGCGGAAAATTCAACAAGAAGTTGCCCGGGGAAAAGCCTCAAAAGCATGAAGGAAAATATCGCAAGTTTTTGCCTGCTGTGGAAGGAATGGGTGTTGGCTCTCAAGAAAAGGAGCAAACTGAGAAAGTCCTGAACCGACTAATATCCAAGAATTCACATGAGATACTAAACATCAATAAGGCCGTCAACATGTGCAATGTGAAAAGAGAAAAGAGGCGAACACATGAAGGCAGGAAGCCTTCATCATCAACATCGAACAAGTTGAAACCAAATAAGAAACTTCAAAAGAAGTCACTGAAGAAGGGACCATCGAAGAAGGGAAAGGCAAAATGA

Protein sequence

METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTEDRDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRYGYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPSHVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYRKFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPSSSTSNKLKPNKKLQKKSLKKGPSKKGKAK

Homology

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BLAST of HG10008030 vs. NCBI nr
Match: XP_022961058.1 (ribosome biogenesis regulatory protein homolog [Cucurbita moschata])

HSP 1 Score: 533.1 bits (1372), Expect = 1.7e-147
Identity = 278/329 (84.50%), Postives = 302/329 (91.79%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           MET Q+VQVDIGHLMA NPHH+  SPPSSREELVNEC+QKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV+L  PKT+LPREK LP+P  PTKWELFAKK+GIK  K+ K ++DEQT TWKRR+
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPGVDPFA+RQ  KR+R+EKQE NRLQNLKQAAK+GALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQAATKKITKDELG+VAGMAATATASGGKF+KKLPGEKP KHEGKYR
Sbjct: 181 HVQLAATALPITGTQAATKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG GVGS+E+EQTEKVLNRLISKNSHEILNINKAVNM NVKREKRR H+ RKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           SSTS+KLKPNKKLQKK LKKG SKKG+AK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

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BLAST of HG10008030 vs. NCBI nr
Match: XP_023515967.1 (ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515969.1 ribosome biogenesis regulatory protein homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 531.2 bits (1367), Expect = 6.4e-147
Identity = 276/329 (83.89%), Postives = 301/329 (91.49%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           MET Q+VQVDIGHLMA NPHH+  SPPSSREELVNEC+QKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV+L  PKT+LPREK LP+P  PTKWELFAKK+GIK  K+ K ++DEQT TWKRR+
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPGVDPFA+RQ  KR+R+EKQE NRLQNLKQAAK+GALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQA TKKITKDELG+VAGMAATATASGGKF+KKLPGEKP KHEGKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG GVGS+E+EQTEKVLNRLISKNSHEILN+NKAVNM NVKREKRR H+ RKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           SSTS+KLKPNKKLQKK LKKG SKKG+AK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of HG10008030 vs. NCBI nr
Match: XP_022144805.1 (ribosome biogenesis regulatory protein homolog [Momordica charantia])

HSP 1 Score: 529.6 bits (1363), Expect = 1.9e-146
Identity = 273/329 (82.98%), Postives = 301/329 (91.49%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           ME QQQ+QVD+GHLMA NPHH+L SPPSSREELVNEC+QKGTELVQAIANELF LPSTED
Sbjct: 1   MENQQQLQVDLGHLMAFNPHHHLTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV LPPPKTRLPREKHLP+P PPTKWELFAKK+GIK  K+ K  +DEQT TWKRR+
Sbjct: 61  RDGPLVRLPPPKTRLPREKHLPKPKPPTKWELFAKKRGIKNRKKDKIAYDEQTQTWKRRH 120

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPG+DPFAERQ+ KR+R+EKQE NRLQNLKQAAK+GALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERQSNKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQ A KK+TKDELG+VAGMAATATASGGKF++KL GEKP KH+GKYR
Sbjct: 181 HVQLAATALPITGTQVAPKKMTKDELGNVAGMAATATASGGKFDRKLRGEKPPKHKGKYR 240

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG GVGS+E+EQTE VLNRLISKNSHEILN+NKA+NM NVKREKRR H+G KPS
Sbjct: 241 KFLPVVEGTGVGSREREQTENVLNRLISKNSHEILNVNKAINMYNVKREKRRKHDG-KPS 300

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           SSTS+KLKPNKK QKKS+KKG S KGKAK
Sbjct: 301 SSTSSKLKPNKKPQKKSMKKGVSNKGKAK 328

[Close]

BLAST of HG10008030 vs. NCBI nr
Match: XP_022987784.1 (ribosome biogenesis regulatory protein homolog [Cucurbita maxima])

HSP 1 Score: 528.1 bits (1359), Expect = 5.5e-146
Identity = 275/329 (83.59%), Postives = 300/329 (91.19%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           MET Q+VQVDIGHLMA +PHH+  SPP +REELVNEC+QKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFDPHHHFTSPPPTREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV+L  PKT+LPREK LP+P  PTKWELFAKK+GIK  K+ K ++DEQT TWKRR+
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPGVDPFA+RQ  KR+R+EKQE NRLQNLKQAAK+GALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQA TKKITKDELG+VAGMAATATASGGKF+KKLPGEKP KHEGKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG GVGS+E+EQTEKVLNRLISKNSHEILNINKAVNM NVKREKRR H+ RKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           SSTS+KLKPNKKLQKK LKKG SKKGKAK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGKAK 329

[Close]

BLAST of HG10008030 vs. NCBI nr
Match: KAG6589856.1 (Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 524.2 bits (1349), Expect = 7.9e-145
Identity = 274/329 (83.28%), Postives = 299/329 (90.88%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           MET Q+V VDIGHLMA NPHH+  SPPSSREELVNEC+QKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV+L  PKT+LPREK LP+P  PTKWELFAKK+GIK  K+ K ++DEQT TWKRR+
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPGVDPFA+R+  KR+R+EKQE NRLQNLKQAAK+GALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQA TKKITKDELG+VAGMAATATASGGKF+KKLPGEKP KHEGKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG GVGS+E+EQTEKVLNRLISKNSHEILNINKAVNM NVKREKRR H+ RKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           SSTS+KLK NKKLQKK LKKG SKKG+AK
Sbjct: 301 SSTSSKLKANKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of HG10008030 vs. ExPASy Swiss-Prot
Match: Q9SH88 (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 379.8 bits (974), Expect = 3.1e-104
Identity = 201/320 (62.81%), Postives = 249/320 (77.81%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           MET+Q  QVD+G+L+A NP+H   S PSSR ELV E + +GT+LVQ IAN+LF  PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
            DGP+V+LPPP T+LPREKH+PRP PPTKWE FA KKGI+  K+ K V+DEQT  +KRR+
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDR ND+ ++PII +K +DEPGVDPFA+R   K++R+ KQEKNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAAT+LPI+GT+A  KKI KDELG VAG+AAT+TASGGKF+KKLPGEKP K +GK+ 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           K+LP V G G  + EKEQT  VL+++ SK+SHEILN+ KA+NM NVK+EK++        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------- 304

Query: 301 SSTSNKLKPNKKLQKKSLKK 321
           S  S+KLKP K + KK   K
Sbjct: 305 SGRSDKLKPKKDITKKPANK 316

[Close]

BLAST of HG10008030 vs. ExPASy Swiss-Prot
Match: Q15050 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 PE=1 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-29
Identity = 112/323 (34.67%), Postives = 169/323 (52.32%), Query Frame = 0


Query: 6   QVQVDIGHLMA--LNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTEDRDG 65
           ++Q D+G+L+A   NP   L     + E  +    +  T+L   + N+L+ LP+    + 
Sbjct: 31  ELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQL---LINQLWQLPTERVEEA 90

Query: 66  PLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRYGYD 125
            +  LP P TRLPREK LPRP P T+W+ FA+ KGI+  K+   V+DE +  W+RR+GY 
Sbjct: 91  IVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQ 150

Query: 126 RANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPSHVQ 185
           RA D+    +I      +P  D FA+R   K++R+ K E NRL+NL +A K+  LPS   
Sbjct: 151 RARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS--- 210

Query: 186 LAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYRKFL 245
             A  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK  +  GK RKF 
Sbjct: 211 --AAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQ 270

Query: 246 PAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPSSST 305
           P     G  + EK+   ++L  + SK     L++ +A N     RE+ +    ++   S 
Sbjct: 271 PL---FGDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN--KQMREEDQEEAAKRRKMSQ 330

Query: 306 SNKLKPNKKLQKKSLKKGPSKKG 327
             K K  ++      K GP  +G
Sbjct: 331 KGKRKGGRQGPGGKRKGGPPSQG 331

[Close]

BLAST of HG10008030 vs. ExPASy Swiss-Prot
Match: Q9CYH6 (Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.3e-29
Identity = 110/326 (33.74%), Postives = 172/326 (52.76%), Query Frame = 0


Query: 6   QVQVDIGHLMA--LNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTEDRDG 65
           +++ D+G+L+A   NP   L     S E  +    +  T+L   + N+L+ LP+    + 
Sbjct: 31  ELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LINQLWRLPTERVEEA 90

Query: 66  PLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRYGYD 125
            +  LP P TRLPREK LPRP P T+W+ FA+ KGI+  K+   V+DE +  W+RR+GY 
Sbjct: 91  VVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYK 150

Query: 126 RANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPSHVQ 185
           RA D+    +I    + +P  D FA+R   K++R+ K E NRL+NL +A K+  +PS   
Sbjct: 151 RARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QMPS--- 210

Query: 186 LAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYRKFL 245
             +  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK  +  GK RKF 
Sbjct: 211 --SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQ 270

Query: 246 PAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPSSST 305
           P     G  + EK+   ++L  + SK     L++ +A N     RE+ +    ++   S 
Sbjct: 271 PL---FGDFAAEKKNQLELLRVMNSKKPR--LDVTRATN--KQMREEDQEEAAKRRKMSQ 330

Query: 306 SNKLKPNKKLQKKSLKKGPSKKGKAK 330
             K K  ++      K GP  +G+ +
Sbjct: 331 KGKRKGGRQGPSGKRKGGPPGQGEKR 334

[Close]

BLAST of HG10008030 vs. ExPASy Swiss-Prot
Match: A1A5P2 (Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=Rrs1 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.3e-29
Identity = 110/326 (33.74%), Postives = 172/326 (52.76%), Query Frame = 0


Query: 6   QVQVDIGHLMA--LNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTEDRDG 65
           +++ D+G+L+A   NP   L     S E  +    +  T+L   + N+L+ LP+    + 
Sbjct: 31  ELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LVNQLWQLPTERVEEA 90

Query: 66  PLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRYGYD 125
            +  LP P TRLPREK LPRP P T+W+ FA+ KGI+  K+   V+DE +  W+RR+GY 
Sbjct: 91  VVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYK 150

Query: 126 RANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPSHVQ 185
           RA D+    +I    + +P  D FA+R   K++R+ K E NRL+NL +A K+  +PS   
Sbjct: 151 RARDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QMPS--- 210

Query: 186 LAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYRKFL 245
             +  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK  +  GK RKF 
Sbjct: 211 --SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQ 270

Query: 246 PAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPSSST 305
           P     G  + EK+   ++L  + SK     L++ +A N     RE+ +    ++   S 
Sbjct: 271 PL---FGDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN--KQMREEDQEEAAKRRKMSQ 330

Query: 306 SNKLKPNKKLQKKSLKKGPSKKGKAK 330
             K K  ++      K GP  +G+ +
Sbjct: 331 KGKKKGGRQGPSGRRKGGPPSQGEKR 334

[Close]

BLAST of HG10008030 vs. ExPASy Swiss-Prot
Match: Q2KIH4 (Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-28
Identity = 111/327 (33.94%), Postives = 173/327 (52.91%), Query Frame = 0


Query: 6   QVQVDIGHLMA--LNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTEDRDG 65
           +++ D+G+L+A   NP   L     ++E  +    +  T+L   + N+L+ LP+    + 
Sbjct: 31  ELEFDLGNLLASDRNPPTGLRHAGPTQEAELRALARDNTQL---LINQLWQLPTERVEEA 90

Query: 66  PLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRYGYD 125
            +  LP P TRLPREK +PRP P T+W+ FA+ KGI+  K+   V+DE +  W+RR+GY 
Sbjct: 91  LVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRRWGYQ 150

Query: 126 RANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPSHVQ 185
           RA D+    +I      +P  D FA+R   K++R+ K E NRL+NL +A K+  LPS   
Sbjct: 151 RARDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS--- 210

Query: 186 LAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYRKFL 245
             A  +  TG Q      +K+ELG    +A  +TAS G+F ++LP EK  +  GK RKF 
Sbjct: 211 --AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQ 270

Query: 246 PAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPSSST 305
           P     G  + E++   ++L  + SK     ++I +A N     RE+ +    ++   S 
Sbjct: 271 PL---FGDFAAERKSQLEMLRVMNSKKPQ--MDITRATN--KQMREEDQEEAAKRRKMSQ 330

Query: 306 SNKLKPNKKLQKKSLKKG-PSKKGKAK 330
             K K  ++      K G PS+ GK K
Sbjct: 331 KGKRKGGRQGPGSKRKGGTPSQGGKRK 335

[Close]

BLAST of HG10008030 vs. ExPASy TrEMBL
Match: A0A6J1HAS5 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111461680 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 8.2e-148
Identity = 278/329 (84.50%), Postives = 302/329 (91.79%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           MET Q+VQVDIGHLMA NPHH+  SPPSSREELVNEC+QKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV+L  PKT+LPREK LP+P  PTKWELFAKK+GIK  K+ K ++DEQT TWKRR+
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPGVDPFA+RQ  KR+R+EKQE NRLQNLKQAAK+GALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQAATKKITKDELG+VAGMAATATASGGKF+KKLPGEKP KHEGKYR
Sbjct: 181 HVQLAATALPITGTQAATKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG GVGS+E+EQTEKVLNRLISKNSHEILNINKAVNM NVKREKRR H+ RKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           SSTS+KLKPNKKLQKK LKKG SKKG+AK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of HG10008030 vs. ExPASy TrEMBL
Match: A0A6J1CSP0 (Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC111014399 PE=3 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 9.1e-147
Identity = 273/329 (82.98%), Postives = 301/329 (91.49%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           ME QQQ+QVD+GHLMA NPHH+L SPPSSREELVNEC+QKGTELVQAIANELF LPSTED
Sbjct: 1   MENQQQLQVDLGHLMAFNPHHHLTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV LPPPKTRLPREKHLP+P PPTKWELFAKK+GIK  K+ K  +DEQT TWKRR+
Sbjct: 61  RDGPLVRLPPPKTRLPREKHLPKPKPPTKWELFAKKRGIKNRKKDKIAYDEQTQTWKRRH 120

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPG+DPFAERQ+ KR+R+EKQE NRLQNLKQAAK+GALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERQSNKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQ A KK+TKDELG+VAGMAATATASGGKF++KL GEKP KH+GKYR
Sbjct: 181 HVQLAATALPITGTQVAPKKMTKDELGNVAGMAATATASGGKFDRKLRGEKPPKHKGKYR 240

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG GVGS+E+EQTE VLNRLISKNSHEILN+NKA+NM NVKREKRR H+G KPS
Sbjct: 241 KFLPVVEGTGVGSREREQTENVLNRLISKNSHEILNVNKAINMYNVKREKRRKHDG-KPS 300

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           SSTS+KLKPNKK QKKS+KKG S KGKAK
Sbjct: 301 SSTSSKLKPNKKPQKKSMKKGVSNKGKAK 328

[Close]

BLAST of HG10008030 vs. ExPASy TrEMBL
Match: A0A6J1JJT9 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111485227 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.6e-146
Identity = 275/329 (83.59%), Postives = 300/329 (91.19%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           MET Q+VQVDIGHLMA +PHH+  SPP +REELVNEC+QKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFDPHHHFTSPPPTREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV+L  PKT+LPREK LP+P  PTKWELFAKK+GIK  K+ K ++DEQT TWKRR+
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPGVDPFA+RQ  KR+R+EKQE NRLQNLKQAAK+GALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQA TKKITKDELG+VAGMAATATASGGKF+KKLPGEKP KHEGKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG GVGS+E+EQTEKVLNRLISKNSHEILNINKAVNM NVKREKRR H+ RKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           SSTS+KLKPNKKLQKK LKKG SKKGKAK
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGKAK 329

[Close]

BLAST of HG10008030 vs. ExPASy TrEMBL
Match: A0A6J1HW20 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111467179 PE=3 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 8.0e-135
Identity = 255/329 (77.51%), Postives = 289/329 (87.84%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           ME QQ  Q+D+G+LMA NPHH   S  SSRE+LV+EC+QKG EL Q IAN+LF LPSTED
Sbjct: 3   MENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTED 62

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV LPPP TRLPREK LP+P PPTKWELFAKK+GIK  K+ K V+D+QT +WKRR+
Sbjct: 63  RDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRH 122

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPGVDPFA R+A K+ R+EKQE+N+LQNLKQAAK+GALPS
Sbjct: 123 GYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPS 182

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQAA KKITKDELG+VAGMAAT+TASGGKF+KKL GEKP KH+GKYR
Sbjct: 183 HVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYR 242

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG G+GSQE+EQTEKVLNRLISKNSHEILNINKAVNM NVK+EK++ ++  K S
Sbjct: 243 KFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSS 302

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           S +SNKLKPNKKLQKK LKKG SK GKAK
Sbjct: 303 SMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of HG10008030 vs. ExPASy TrEMBL
Match: A0A6J1F066 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111440969 PE=3 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 1.0e-134
Identity = 255/329 (77.51%), Postives = 289/329 (87.84%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           ME QQ  Q+D+G+LMA NPHH   S  SSRE+LV+EC+QKG EL Q IAN+LF LPSTED
Sbjct: 3   MENQQPFQIDLGNLMAFNPHHQYPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTED 62

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
           RDGPLV LPPP TRLPREK LP+P PPTKWELFAKK+GIK  K+ K V+D+QT +WKRR+
Sbjct: 63  RDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRH 122

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDRANDE+NIPII +KMTDEPGVDPFA R+A K+ R+EKQE+N+LQNLKQAAK+GALPS
Sbjct: 123 GYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPS 182

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAATALPITGTQAA KKITKDELG+VAGMAAT+TASGGKF+KKL GEKP KH+GKYR
Sbjct: 183 HVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYR 242

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           KFLP VEG G+GSQE+EQTEKVLNRLISKNSHEILNINKAVNM NVK+EK++ ++  K S
Sbjct: 243 KFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSS 302

Query: 301 SSTSNKLKPNKKLQKKSLKKGPSKKGKAK 330
           S +SNKLKPNKKLQKK LKKG SK GKAK
Sbjct: 303 SMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of HG10008030 vs. TAIR 10
Match: AT2G37990.1 (ribosome biogenesis regulatory protein (RRS1) family protein )

HSP 1 Score: 379.8 bits (974), Expect = 2.2e-105
Identity = 201/320 (62.81%), Postives = 249/320 (77.81%), Query Frame = 0


Query: 1   METQQQVQVDIGHLMALNPHHNLISPPSSREELVNECIQKGTELVQAIANELFFLPSTED 60
           MET+Q  QVD+G+L+A NP+H   S PSSR ELV E + +GT+LVQ IAN+LF  PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 61  RDGPLVELPPPKTRLPREKHLPRPNPPTKWELFAKKKGIKIIKRGKNVFDEQTCTWKRRY 120
            DGP+V+LPPP T+LPREKH+PRP PPTKWE FA KKGI+  K+ K V+DEQT  +KRR+
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 121 GYDRANDEKNIPIIASKMTDEPGVDPFAERQAKKRQRIEKQEKNRLQNLKQAAKIGALPS 180
           GYDR ND+ ++PII +K +DEPGVDPFA+R   K++R+ KQEKNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 181 HVQLAATALPITGTQAATKKITKDELGHVAGMAATATASGGKFNKKLPGEKPQKHEGKYR 240
           HVQLAAT+LPI+GT+A  KKI KDELG VAG+AAT+TASGGKF+KKLPGEKP K +GK+ 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 241 KFLPAVEGMGVGSQEKEQTEKVLNRLISKNSHEILNINKAVNMCNVKREKRRTHEGRKPS 300
           K+LP V G G  + EKEQT  VL+++ SK+SHEILN+ KA+NM NVK+EK++        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------- 304

Query: 301 SSTSNKLKPNKKLQKKSLKK 321
           S  S+KLKP K + KK   K
Sbjct: 305 SGRSDKLKPKKDITKKPANK 316

The following BLAST results are available for this feature:

BLAST of HG10008030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961058.1	1.7e-147	84.50	ribosome biogenesis regulatory protein homolog [Cucurbita moschata]	[more]
XP_023515967.1	6.4e-147	83.89	ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp....	[more]
XP_022144805.1	1.9e-146	82.98	ribosome biogenesis regulatory protein homolog [Momordica charantia]	[more]
XP_022987784.1	5.5e-146	83.59	ribosome biogenesis regulatory protein homolog [Cucurbita maxima]	[more]
KAG6589856.1	7.9e-145	83.28	Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosp...	[more]

BLAST of HG10008030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SH88	3.1e-104	62.81	Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 G...	[more]
Q15050	1.5e-29	34.67	Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 P...	[more]
Q9CYH6	3.3e-29	33.74	Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 ...	[more]
A1A5P2	4.3e-29	33.74	Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=...	[more]
Q2KIH4	1.3e-28	33.94	Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=...	[more]

BLAST of HG10008030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAS5	8.2e-148	84.50	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1CSP0	9.1e-147	82.98	Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JJT9	2.6e-146	83.59	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114852...	[more]
A0A6J1HW20	8.0e-135	77.51	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114671...	[more]
A0A6J1F066	1.0e-134	77.51	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of HG10008030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37990.1	2.2e-105	62.81	ribosome biogenesis regulatory protein (RRS1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007023	Ribosomal biogenesis regulatory protein	PFAM	PF04939	RRS1	coord: 7..169 e-value: 9.2E-48 score: 162.2
IPR007023	Ribosomal biogenesis regulatory protein	PANTHER	PTHR17602	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..301
None	No IPR available	PANTHER	PTHR17602:SF5	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..319

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008030.1	HG10008030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0000055	ribosomal large subunit export from nucleus
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005634	nucleus