HG10008021 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008021
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	Chr10: 18779511 .. 18781374 (+)
RNA-Seq Expression	HG10008021
Synteny	HG10008021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGGTCAGCAGGAGATTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAAAAAAGAGAAGCATGCCATCGTTGTGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCATCAGCTGCGGAGCTCACAATTATGCCAGCCGCCCCAACTGCTTTAGATGTGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCTCCTACATGATCGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGGTATACACAGAACAATAATAAACTTTACAGTTGAAGTTGTTATTGTATGTTCTGAAGCACGAGTGATTTCATAATGGTTAAAATCACTTCACGTTGACAATCACTCTGAACCATGTTTGTAATTAATCAAAATCATTTAGATGGTATAACAATCAAGTTTATAAGTGTAAGCAATCAAACATTTAACTAAATTTTGAATGATCAAAAGGCATGTTTGGAGTAATTCTGAACCTGACATAGAATCTGCATAAAATTACAACTGCATAGCTAGAGAACTTCAAATTTTCCTTACTCAAAAGATCATACTGATAACATACTATAAAGTTTGTTAATGTTATTTATATTCATACCAGCATTAAATATGCTAAATTAATAGTTAATGTTATGTTGTACAGAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGGTAAGTTTATATCAATTAAAAAACATTTACACCTCTGTTTATCTGCCCCTCAAAAAGTGGTTAATAGAATTAACCAGTAGATGGGGTTTAATTTCTTTGTTGGTCACTTGGGTGTGTGATACAATTTTGGGTGCTCTATCTTTCAGGTGGTGCAGTTTAAAGCGGGAAGGAATTTTGGAAGGCTCTCCTTATGCGATTATATGGTCTTCCTTGGCATCTGATCCCTATCCAAATGCTGCCTTTTTCTTTTTCTTCTTTTTTTTTTTTTTTTTTAATGACTAACAACAATAATGTTAAGCCCTTAGAATGATCCGCAATATAGATATTATGGGTGAAGGCCCATTTTTCCATTCCAGCATTGCAATATAGCTAGCTATTCTCTCTTTCTAATGGGTGCTAAAAACGGGAACAAACATATCCGAATACTGTGTTTGGATGGTCCTCCATGGAATTTCAATAGTTGCTTTATAAACACAGAATCAAATTGAAATGAAAACTATGAAGGCTTGAACTTAGGTCAGCATAAAGAGCTCTTTCAGATTGAACCAGAAGGTTAAACAGAGGGAAAAGGTTATGAAAGAGAATTGGGGGGATTTTGGGGTATTGATTAAGATTCAGAATCTGTGTGAATAGCAAGTTCCTAAGGAGATAAACTCAACTTTCAGCTCAATAATTTATGGTCCTTTAAGCATCAAATCATTCTTATATATAAAAATAGATAAGAACCAGATGCCCCACTTCAACGGACATTAATGGAAACACCCTTCTAATAATATTATTAGGCCCAAATTGTGAGTCAACCCAACTCTGATTTGTGGCTGTAAAGAAGATTTCGTAGAAAAAGGTACAATCTCTAGAGAATCTTTGCAGGTTAATTATATAGTATAATTCGTTTTCATTATCTAATTAGGCTATTTTTAACTTTGTAGATTCCAATCAACTTATCGTGGAAAATTTCTTAGTTGAACTTGTTCCCCAAACACTTCACAAGAATAGATCCAAAATACACAGCCACCAAGACGATCTATCTCTACACGTATTTCAAAAGAACAAATTGTAG

mRNA sequence

ATGAGCTGGTCAGCAGGAGATTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAAAAAAGAGAAGCATGCCATCGTTGTGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCATCAGCTGCGGAGCTCACAATTATGCCAGCCGCCCCAACTGCTTTAGATGTGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCTCCTACATGATCGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGATTCCAATCAACTTATCGTGGAAAATTTCTTAGTTGAACTTGTTCCCCAAACACTTCACAAGAATAGATCCAAAATACACAGCCACCAAGACGATCTATCTCTACACGTATTTCAAAAGAACAAATTGTAG

Coding sequence (CDS)

ATGAGCTGGTCAGCAGGAGATTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAAAAAAGAGAAGCATGCCATCGTTGTGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCATCAGCTGCGGAGCTCACAATTATGCCAGCCGCCCCAACTGCTTTAGATGTGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCTCCTACATGATCGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTCGATTCCAATCAACTTATCGTGGAAAATTTCTTAGTTGAACTTGTTCCCCAAACACTTCACAAGAATAGATCCAAAATACACAGCCACCAAGACGATCTATCTCTACACGTATTTCAAAAGAACAAATTGTAG

Protein sequence

MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRDFDSNQLIVENFLVELVPQTLHKNRSKIHSHQDDLSLHVFQKNKL

Homology

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BLAST of HG10008021 vs. NCBI nr
Match: XP_011656267.2 (zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus] >XP_011656275.1 zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 121 YASRMECFKCKTPRDF 136

[Close]

BLAST of HG10008021 vs. NCBI nr
Match: XP_008465020.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 69  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 128

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 129 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 188

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 189 YASRMECFKCKTPRDF 204

[Close]

BLAST of HG10008021 vs. NCBI nr
Match: XP_008465021.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 190 YASRMECFKCKTPRDF 205

[Close]

BLAST of HG10008021 vs. NCBI nr
Match: XP_004150016.3 (zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus] >KAA0046754.1 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Cucumis melo var. makuwa] >TYK29693.1 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 121 YASRMECFKCKTPRDF 136

[Close]

BLAST of HG10008021 vs. NCBI nr
Match: KAE8653078.1 (hypothetical protein Csa_020050 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 69  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 128

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 129 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 188

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 189 YASRMECFKCKTPRDF 204

[Close]

BLAST of HG10008021 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 34/130 (26.15%), Postives = 53/130 (40.77%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYN-KTEALAGDWYCTTISCGAHNY 65
           GDW C +C   NF++R +C RC++P       +T S     +   G+ Y    S    NY
Sbjct: 345 GDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANY 404

Query: 66  ASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHNYASR 125
               +       +S      G+  +              +++GDW C   GCG HN+A  
Sbjct: 405 GGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFAKN 464

Query: 126 MECFKCKTPR 135
           + C +C   R
Sbjct: 465 VCCLRCGASR 474

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BLAST of HG10008021 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-05
Identity = 31/87 (35.63%), Postives = 40/87 (45.98%), Query Frame = 0


Query: 50  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSG 109
           GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTT---EAKMMKAGGTEIGKTLAEKSRGLFSAN 70

Query: 110 DWICPRMGCGVHNYASRMECFKCKTPR 135
           DW C    CG  N+A R EC  C TP+
Sbjct: 71  DWQCKT--CGNVNWARRSECNMCNTPK 92

[Close]

BLAST of HG10008021 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 9.0e-05
Identity = 30/87 (34.48%), Postives = 39/87 (44.83%), Query Frame = 0


Query: 50  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSG 109
           GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTT---EAKMMKAGGTEIGKTLAEKSRGLFSAN 70

Query: 110 DWICPRMGCGVHNYASRMECFKCKTPR 135
           DW C    C   N+A R EC  C TP+
Sbjct: 71  DWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of HG10008021 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 9.0e-05
Identity = 30/87 (34.48%), Postives = 39/87 (44.83%), Query Frame = 0


Query: 50  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSG 109
           GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTT---EAKMMKAGGTEIGKTLAEKSRGLFSAN 70

Query: 110 DWICPRMGCGVHNYASRMECFKCKTPR 135
           DW C    C   N+A R EC  C TP+
Sbjct: 71  DWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of HG10008021 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.0e-05
Identity = 30/87 (34.48%), Postives = 39/87 (44.83%), Query Frame = 0


Query: 50  GDWYCTTISCGAHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSD-ASIPPG-WKSG 109
           GDW C    CG  N+A R +C RCG  K+    +      G  + G   A    G + + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTT---EAKMMKAGGTEIGKTLAEKSRGLFSAN 70

Query: 110 DWICPRMGCGVHNYASRMECFKCKTPR 135
           DW C    C   N+A R EC  C TP+
Sbjct: 71  DWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of HG10008021 vs. ExPASy TrEMBL
Match: A0A5D3E0T0 (Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00450 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.6e-82
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 121 YASRMECFKCKTPRDF 136

[Close]

BLAST of HG10008021 vs. ExPASy TrEMBL
Match: A0A0A0LWE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.6e-82
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 190 YASRMECFKCKTPRDF 205

[Close]

BLAST of HG10008021 vs. ExPASy TrEMBL
Match: A0A1S3CPF6 (uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.6e-82
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 69  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 128

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 129 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 188

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 189 YASRMECFKCKTPRDF 204

[Close]

BLAST of HG10008021 vs. ExPASy TrEMBL
Match: A0A1S3CMY6 (uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.6e-82
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 190 YASRMECFKCKTPRDF 205

[Close]

BLAST of HG10008021 vs. ExPASy TrEMBL
Match: A0A1S3CNB1 (uncharacterized protein LOC103502740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.6e-82
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSWSAGDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTEALAGDWYCTT+SCG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYPGDYGSYMIGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCFRCGAFKSVYPGDYG+YM+GSDQYGSDASIPPGWKSGDWICPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRMECFKCKTPRDF 137
           YASRMECFKCKTPRDF
Sbjct: 190 YASRMECFKCKTPRDF 205

[Close]

BLAST of HG10008021 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-55
Identity = 87/138 (63.04%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MSWSAGDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCG 60
           MSW+ GDW+C  CQ+ NFKKRE+C +C YPK+GG D STY YN+TE +AGDWYC  ++CG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYPGD-YGSYMIGSDQYGSD-ASIPPGWKSGDWICPRMGCGV 120
           +HNYASR +C+RCG  K  Y    YG+ M+    YG+D A+ PPGWK+GDW+CPR+GCGV
Sbjct: 61  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVA---YGNDGAACPPGWKTGDWVCPRVGCGV 120

Query: 121 HNYASRMECFKCKTPRDF 137
           HNYASR ECFKCKT RD+
Sbjct: 121 HNYASRAECFKCKTTRDY 135

[Close]

BLAST of HG10008021 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-32
Identity = 65/156 (41.67%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCA-------------YPKYGGPDPSTYSYNK-TEALAGD 65
           GDW C  C ++NF++R++C RC              +  +GG   S + +   ++   GD
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRPGD 64

Query: 66  WYCTTISCGAHNYASRPNCFRCGAFK-SVYPGDYGSYMIGSDQYGSD--ASIPPG----- 125
           WYCT  +CG HN+ASR  CF+CG FK     G  G  + G   + +D   S  PG     
Sbjct: 65  WYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGGRS 124

Query: 126 -WKSGDWICPRMGCGVHNYASRMECFKCKTPRDFDS 139
            WKSGDWIC R+GC  HN+ASRMECF+C  PRDF +
Sbjct: 125 SWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSN 160

[Close]

BLAST of HG10008021 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 59/159 (37.11%), Postives = 82/159 (51.57%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCAYPKYGG------------PDPSTYSYNK-TEALAGDW 65
           GDW C +C ++NF++R++C RC  P+ GG            P  S++ +N   +   GDW
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64

Query: 66  YCTTISCGAHNYASRPNCFRCGAFKSVYPGD----------------YGSYMIGSDQYGS 125
           YC    CG HN+A+R +CF+CGA K  +                    G +  G    G 
Sbjct: 65  YCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSSGG 124

Query: 126 DASIPPGWKSGDWICPRMGCGVHNYASRMECFKCKTPRD 136
             +    WKSGDWICPR GC  HN+ASR ECF+C  P++
Sbjct: 125 GGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of HG10008021 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.3e-18
Identity = 53/149 (35.57%), Postives = 69/149 (46.31%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCAYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNYA 65
           GDW C  C+N N+  R  C+RC  P+    D +T   +K     GDW CT   C  +NYA
Sbjct: 7   GDWECLGCRNRNYAFRSFCNRCKQPRL-IMDNNTSPNSKWLPRIGDWICT--GCTNNNYA 66

Query: 66  SRPNCFRCGAFKSV-------YPG-----------------DYGSYMIGSDQYGSDASIP 125
           SR  C +CG  K V        PG                 D    ++      + AS+ 
Sbjct: 67  SREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSNATNQASVH 126

Query: 126 PGWKSGDWICPRMGCGVHNYASRMECFKC 131
             W+SGDWIC    CG HNY+SR++C KC
Sbjct: 127 KEWRSGDWIC---RCGFHNYSSRIQCKKC 149

[Close]

BLAST of HG10008021 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04
Identity = 23/83 (27.71%), Postives = 34/83 (40.96%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRC-AYPKYGGPDPSTYSYNKTEALAGDWYCTTISCGAHNY 65
           GDW C  C+ +NF K   C RC  + +           +      GDW C T  C   N+
Sbjct: 236 GDWYCTECKFLNFAKNIRCLRCDVFSEERLKQLKEEQKDHLPLKKGDWICQT--CNFLNF 295

Query: 66  ASRPNCFRC---GAFKSVYPGDY 85
           +    C RC      + + PG++
Sbjct: 296 SKNTRCLRCKDKPTLRQINPGEW 316

The following BLAST results are available for this feature:

BLAST of HG10008021 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656267.2	1.1e-81	97.06	zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus]...	[more]
XP_008465020.2	1.1e-81	97.06	PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo]	[more]
XP_008465021.2	1.1e-81	97.06	PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo]	[more]
XP_004150016.3	1.1e-81	97.06	zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus]...	[more]
KAE8653078.1	1.1e-81	97.06	hypothetical protein Csa_020050 [Cucumis sativus]	[more]

BLAST of HG10008021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	1.9e-07	26.15	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q5ZLX5	1.8e-05	35.63	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]
O95218	9.0e-05	34.48	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
Q9R020	9.0e-05	34.48	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]
Q19QU3	9.0e-05	34.48	Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA...	[more]

BLAST of HG10008021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0T0	5.6e-82	97.06	Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis m...	[more]
A0A0A0LWE1	5.6e-82	97.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1	[more]
A0A1S3CPF6	5.6e-82	97.06	uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CMY6	5.6e-82	97.06	uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CNB1	5.6e-82	97.06	uncharacterized protein LOC103502740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of HG10008021 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26695.1	1.5e-55	63.04	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	1.4e-32	41.67	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.3e-30	37.11	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	4.3e-18	35.57	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	3.5e-04	27.71	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 6..30 e-value: 1.8E-4 score: 30.9 coord: 50..76 e-value: 1.2E-4 score: 31.4 coord: 107..133 e-value: 2.7E-8 score: 43.6
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 4..31 e-value: 3.2E-6 score: 26.4 coord: 49..77 e-value: 1.0E-7 score: 31.1 coord: 105..134 e-value: 7.3E-9 score: 34.8
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 8..27
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 109..130
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 52..73
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 48..79 score: 9.111317
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 4..33 score: 9.066148
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 105..136 score: 10.138906
None	No IPR available	GENE3D	4.10.1060.10		coord: 1..35 e-value: 2.2E-10 score: 41.6 coord: 100..135 e-value: 3.6E-13 score: 50.5 coord: 40..79 e-value: 7.3E-11 score: 43.1
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR23111:SF41	ZINC FINGER, RANBP2-TYPE-RELATED	coord: 1..139
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 101..137
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..34
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 46..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008021.1	HG10008021.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding