HG10008004 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008004
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ATP synthase subunit beta, chloroplastic
Location	Chr10: 18572950 .. 18573411 (+)
RNA-Seq Expression	HG10008004
Synteny	HG10008004

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCTTACAAGAAAAAATTACTTCTATCAAGGAAGGGCCCATAACTTCTATTCAAGCTGTTTATGTACCTGCGGACGATTTGACCGATACTGCTCCTGCCACCACATTTGCACATTTGGGTGTTACTACTGTACTATCAAGAAGATTAGCTGCCAAAAGTATCTATCCAGTAGTAGATCCTTTAGATTCAACCTCAACTATGCTACAACCTCGAATTGTTAGTGAAGACCATTATGAAACTACGCAAAGAGTTAAACAAACCTTACAACGTTACAAAGAACTGCAGGACATTATAGTTATCCTTGGGTTGGATGAATTATCCGAAGAGGATCACTTAACTGTAGCACGAGCACGAAAAATTGAGTGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACTGGTTTAGGGTTTAGGGTTTTCCTCAAGATTCCAATTTTGTCCGATTCTTAA

mRNA sequence

ATGAGTTCCTTACAAGAAAAAATTACTTCTATCAAGGAAGGGCCCATAACTTCTATTCAAGCTGTTTATGTACCTGCGGACGATTTGACCGATACTGCTCCTGCCACCACATTTGCACATTTGGGTGTTACTACTGTACTATCAAGAAGATTAGCTGCCAAAAGTATCTATCCAGTAGTAGATCCTTTAGATTCAACCTCAACTATGCTACAACCTCGAATTGTTAGTGAAGACCATTATGAAACTACGCAAAGAGTTAAACAAACCTTACAACGTTACAAAGAACTGCAGGACATTATAGTTATCCTTGGGTTGGATGAATTATCCGAAGAGGATCACTTAACTGTAGCACGAGCACGAAAAATTGAGTGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACTGGTTTAGGGTTTAGGGTTTTCCTCAAGATTCCAATTTTGTCCGATTCTTAA

Coding sequence (CDS)

ATGAGTTCCTTACAAGAAAAAATTACTTCTATCAAGGAAGGGCCCATAACTTCTATTCAAGCTGTTTATGTACCTGCGGACGATTTGACCGATACTGCTCCTGCCACCACATTTGCACATTTGGGTGTTACTACTGTACTATCAAGAAGATTAGCTGCCAAAAGTATCTATCCAGTAGTAGATCCTTTAGATTCAACCTCAACTATGCTACAACCTCGAATTGTTAGTGAAGACCATTATGAAACTACGCAAAGAGTTAAACAAACCTTACAACGTTACAAAGAACTGCAGGACATTATAGTTATCCTTGGGTTGGATGAATTATCCGAAGAGGATCACTTAACTGTAGCACGAGCACGAAAAATTGAGTGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACTGGTTTAGGGTTTAGGGTTTTCCTCAAGATTCCAATTTTGTCCGATTCTTAA

Protein sequence

MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVVDPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARARKIECFLSQPFFVAEVFTGLGFRVFLKIPILSDS

Homology

[Close]

BLAST of HG10008004 vs. NCBI nr
Match: AAF64070.1 (ATP synthase, B subunit, partial [Quercus rubra])

HSP 1 Score: 232.6 bits (592), Expect = 2.2e-57
Identity = 123/138 (89.13%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSRRLAAK IYP V
Sbjct: 296 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRRLAAKGIYPAV 355

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 356 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 415

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 416 KIERFLSQPFFVAEVFTG 433

[Close]

BLAST of HG10008004 vs. NCBI nr
Match: ACB10598.1 (ATP synthase beta subunit, partial [Cornus hongkongensis])

HSP 1 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 122/138 (88.41%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEGPITSIQAVYVPADDLTD APATTFAHL  TTVLSR LA+K IYP V
Sbjct: 267 MGSLQERITSTKEGPITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAV 326

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 327 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 386

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 387 KIERFLSQPFFVAEVFTG 404

[Close]

BLAST of HG10008004 vs. NCBI nr
Match: AEE01395.1 (ATP synthase beta chain, partial [Brachychiton acerifolius])

HSP 1 Score: 231.5 bits (589), Expect = 4.9e-57
Identity = 123/138 (89.13%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 301 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 360

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV EDHYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 361 DPLDSTSTMLQPRIVGEDHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 420

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 421 KIERFLSQPFFVAEVFTG 438

[Close]

BLAST of HG10008004 vs. NCBI nr
Match: ACZ73599.1 (ATP synthase beta subunit [Cneorum tricoccon])

HSP 1 Score: 231.5 bits (589), Expect = 4.9e-57
Identity = 123/138 (89.13%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV EDHYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEDHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. NCBI nr
Match: CBY80073.1 (ATP synthase beta subunit, partial [Cedrelopsis gracilis])

HSP 1 Score: 231.5 bits (589), Expect = 4.9e-57
Identity = 123/138 (89.13%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 286 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 345

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV EDHYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 346 DPLDSTSTMLQPRIVGEDHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 405

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 406 KIERFLSQPFFVAEVFTG 423

[Close]

BLAST of HG10008004 vs. ExPASy Swiss-Prot
Match: Q3V527 (ATP synthase subunit beta, chloroplastic OS=Acorus calamus OX=4465 GN=atpB PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-59
Identity = 122/138 (88.41%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. ExPASy Swiss-Prot
Match: Q85V24 (ATP synthase subunit beta, chloroplastic OS=Barnardia japonica OX=49652 GN=atpB PE=3 SV=2)

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-59
Identity = 122/138 (88.41%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. ExPASy Swiss-Prot
Match: Q85V57 (ATP synthase subunit beta, chloroplastic OS=Bowiea volubilis OX=44987 GN=atpB PE=3 SV=2)

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-59
Identity = 122/138 (88.41%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. ExPASy Swiss-Prot
Match: Q9MRR9 (ATP synthase subunit beta, chloroplastic OS=Brasenia schreberi OX=4424 GN=atpB PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-59
Identity = 122/138 (88.41%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. ExPASy Swiss-Prot
Match: A6MM43 (ATP synthase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=atpB PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-59
Identity = 122/138 (88.41%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. ExPASy TrEMBL
Match: Q9MV65 (ATP synthase subunit beta (Fragment) OS=Quercus rubra OX=3512 GN=atpB PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 123/138 (89.13%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSRRLAAK IYP V
Sbjct: 296 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRRLAAKGIYPAV 355

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 356 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 415

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 416 KIERFLSQPFFVAEVFTG 433

[Close]

BLAST of HG10008004 vs. ExPASy TrEMBL
Match: B9TTK9 (ATP synthase subunit beta (Fragment) OS=Cornus hongkongensis OX=366915 GN=atpB PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 122/138 (88.41%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEGPITSIQAVYVPADDLTD APATTFAHL  TTVLSR LA+K IYP V
Sbjct: 267 MGSLQERITSTKEGPITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAV 326

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 327 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 386

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 387 KIERFLSQPFFVAEVFTG 404

[Close]

BLAST of HG10008004 vs. ExPASy TrEMBL
Match: A0A1P8LE77 (ATP synthase subunit beta OS=Citrullus mucosospermus OX=519315 GN=atpB PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.4e-57
Identity = 123/138 (89.13%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV EDHYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEDHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. ExPASy TrEMBL
Match: X2F8I3 (ATP synthase subunit beta, chloroplastic OS=Lagenaria siceraria OX=3668 GN=atpB PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.4e-57
Identity = 123/138 (89.13%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV EDHYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEDHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. ExPASy TrEMBL
Match: Q29S88 (ATP synthase subunit beta (Fragment) OS=Lagenaria breviflora OX=254159 GN=atpB PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.4e-57
Identity = 123/138 (89.13%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M SLQE+ITS KEG ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 297 MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 356

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV EDHYET QRVKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 357 DPLDSTSTMLQPRIVGEDHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 416

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 417 KIERFLSQPFFVAEVFTG 434

[Close]

BLAST of HG10008004 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 225.7 bits (574), Expect = 2.5e-59
Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           M +LQE+ITS K+G ITSIQAVYVPADDLTD APATTFAHL  TTVLSR LAAK IYP V
Sbjct: 306 MGTLQERITSTKKGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTSTMLQPRIV E+HYET Q+VKQTLQRYKELQDII ILGLDELSEED LTVARAR
Sbjct: 366 DPLDSTSTMLQPRIVGEEHYETAQQVKQTLQRYKELQDIIAILGLDELSEEDRLTVARAR 425

Query: 121 KIECFLSQPFFVAEVFTG 139
           KIE FLSQPFFVAEVFTG
Sbjct: 426 KIERFLSQPFFVAEVFTG 443

[Close]

BLAST of HG10008004 vs. TAIR 10
Match: AT5G08670.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-48
Identity = 95/138 (68.84%), Postives = 114/138 (82.61%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           + +LQE+IT+ K+G ITS+QA+YVPADDLTD APATTFAHL  TTVLSR+++   IYP V
Sbjct: 366 LGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAV 425

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTS ML P I+ E+HY T + V++ LQ YK LQDII ILG+DELSE+D LTVARAR
Sbjct: 426 DPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARAR 485

Query: 121 KIECFLSQPFFVAEVFTG 139
           KI+ FLSQPF VAE+FTG
Sbjct: 486 KIQRFLSQPFHVAEIFTG 503

[Close]

BLAST of HG10008004 vs. TAIR 10
Match: AT5G08680.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-48
Identity = 95/138 (68.84%), Postives = 114/138 (82.61%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           + +LQE+IT+ K+G ITS+QA+YVPADDLTD APATTFAHL  TTVLSR+++   IYP V
Sbjct: 369 LGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAV 428

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTS ML P I+ E+HY T + V++ LQ YK LQDII ILG+DELSE+D LTVARAR
Sbjct: 429 DPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARAR 488

Query: 121 KIECFLSQPFFVAEVFTG 139
           KI+ FLSQPF VAE+FTG
Sbjct: 489 KIQRFLSQPFHVAEIFTG 506

[Close]

BLAST of HG10008004 vs. TAIR 10
Match: AT5G08690.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-48
Identity = 95/138 (68.84%), Postives = 114/138 (82.61%), Query Frame = 0


Query: 1   MSSLQEKITSIKEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVV 60
           + +LQE+IT+ K+G ITS+QA+YVPADDLTD APATTFAHL  TTVLSR+++   IYP V
Sbjct: 366 LGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAV 425

Query: 61  DPLDSTSTMLQPRIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARAR 120
           DPLDSTS ML P I+ E+HY T + V++ LQ YK LQDII ILG+DELSE+D LTVARAR
Sbjct: 426 DPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARAR 485

Query: 121 KIECFLSQPFFVAEVFTG 139
           KI+ FLSQPF VAE+FTG
Sbjct: 486 KIQRFLSQPFHVAEIFTG 503

[Close]

BLAST of HG10008004 vs. TAIR 10
Match: AT1G78900.1 (vacuolar ATP synthase subunit A )

HSP 1 Score: 44.7 bits (104), Expect = 7.9e-05
Identity = 36/126 (28.57%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 12  KEGPITSIQAVYVPADDLTDTAPATTFAHLGVTTVLSRRLAAKSIYPVVDPLDS---TST 71
           + G +T + AV  P  D +D   + T + + V   L ++LA +  +P V+ L S    ST
Sbjct: 403 RNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYST 462

Query: 72  MLQP--RIVSEDHYETTQRVKQTLQRYKELQDIIVILGLDELSEEDHLTVARARKI-ECF 131
            L+        D      + ++ LQR  +L +I+ ++G D L+E D +T+  A+ + E +
Sbjct: 463 ALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDY 522

The following BLAST results are available for this feature:

BLAST of HG10008004 vs. NCBI nr


Match Name	E-value	Identity	Description
AAF64070.1	2.2e-57	89.13	ATP synthase, B subunit, partial [Quercus rubra]	[more]
ACB10598.1	3.8e-57	88.41	ATP synthase beta subunit, partial [Cornus hongkongensis]	[more]
AEE01395.1	4.9e-57	89.13	ATP synthase beta chain, partial [Brachychiton acerifolius]	[more]
ACZ73599.1	4.9e-57	89.13	ATP synthase beta subunit [Cneorum tricoccon]	[more]
CBY80073.1	4.9e-57	89.13	ATP synthase beta subunit, partial [Cedrelopsis gracilis]	[more]

BLAST of HG10008004 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V527	1.9e-59	88.41	ATP synthase subunit beta, chloroplastic OS=Acorus calamus OX=4465 GN=atpB PE=3 ...	[more]
Q85V24	1.9e-59	88.41	ATP synthase subunit beta, chloroplastic OS=Barnardia japonica OX=49652 GN=atpB ...	[more]
Q85V57	1.9e-59	88.41	ATP synthase subunit beta, chloroplastic OS=Bowiea volubilis OX=44987 GN=atpB PE...	[more]
Q9MRR9	1.9e-59	88.41	ATP synthase subunit beta, chloroplastic OS=Brasenia schreberi OX=4424 GN=atpB P...	[more]
A6MM43	1.9e-59	88.41	ATP synthase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=atpB ...	[more]

BLAST of HG10008004 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q9MV65	1.1e-57	89.13	ATP synthase subunit beta (Fragment) OS=Quercus rubra OX=3512 GN=atpB PE=3 SV=1	[more]
B9TTK9	1.8e-57	88.41	ATP synthase subunit beta (Fragment) OS=Cornus hongkongensis OX=366915 GN=atpB P...	[more]
A0A1P8LE77	2.4e-57	89.13	ATP synthase subunit beta OS=Citrullus mucosospermus OX=519315 GN=atpB PE=3 SV=1	[more]
X2F8I3	2.4e-57	89.13	ATP synthase subunit beta, chloroplastic OS=Lagenaria siceraria OX=3668 GN=atpB ...	[more]
Q29S88	2.4e-57	89.13	ATP synthase subunit beta (Fragment) OS=Lagenaria breviflora OX=254159 GN=atpB P...	[more]

BLAST of HG10008004 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00480.1	2.5e-59	86.23	ATP synthase subunit beta	[more]
AT5G08670.1	1.5e-48	68.84	ATP synthase alpha/beta family protein	[more]
AT5G08680.1	1.5e-48	68.84	ATP synthase alpha/beta family protein	[more]
AT5G08690.1	1.5e-48	68.84	ATP synthase alpha/beta family protein	[more]
AT1G78900.1	7.9e-05	28.57	vacuolar ATP synthase subunit A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	PFAM	PF00006	ATP-synt_ab	coord: 1..67 e-value: 3.1E-12 score: 46.6
IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	GENE3D	1.10.1140.10		coord: 72..145 e-value: 7.4E-34 score: 117.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..71 e-value: 1.7E-20 score: 75.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..72
None	No IPR available	PANTHER	PTHR15184:SF65	F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT	coord: 1..139
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 1..139
None	No IPR available	SUPERFAMILY	47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 70..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008004.1	HG10008004.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism