HG10007955 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007955
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Chr10: 17834907 .. 17835554 (+)
RNA-Seq Expression	HG10007955
Synteny	HG10007955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCCAGTTCCAGGGACGATTCTGTCCCTGTGCCCTACACTCTTCTTCCCCAAAATGCTGCACAGCAAAACGTCGTCGTTTTATCCCTCTACCGTCCCCCTCCATGCCGACATCGGCGGCTTCTCCGCCTCTGTGCTCTCTACTCCGCCGCCTTCCTCCTCCTCTTCACCGTTGCTTTTCTACTTTTCCCCTCCGATCCTTCGCTCCAACTCGTCCGATTGAAACTCAATCGTGTCAAAGTCCATTTGTTGCCTGTTGTCGCCCTTGACCTTTCTTTCTTTGCTTCTCTTAGGGTTCGCAATAAGAACTTCTTCTCTCTCGATTACGATTACATTGGGGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATATGTGAGCTCTCAGGGCGGTCGAGTTTCTGCTCGAGGCTCTTCTTATGTGAATGCCACTCTCGACTTGAATGGGTTTGAAGTCGTTCACGACGTCTTGTACTTGCTTGCGGATCTGGGGAAGGGTATCATTCCCTTCGATACGGAGACGGAAGTGGAAGGATCCATGGGGATTCTCTTTATCAAATTCCCGATTAAGGTAATGTTGATTTTGATTCTGTTTTTCACAATAAATCAAAGCTTTACTCGGAATTGTGAATTGGTTCGATGTTGA

mRNA sequence

ATGACCTCCAGTTCCAGGGACGATTCTGTCCCTGTGCCCTACACTCTTCTTCCCCAAAATGCTGCACAGCAAAACGTCGTCGTTTTATCCCTCTACCGTCCCCCTCCATGCCGACATCGGCGGCTTCTCCGCCTCTGTGCTCTCTACTCCGCCGCCTTCCTCCTCCTCTTCACCGTTGCTTTTCTACTTTTCCCCTCCGATCCTTCGCTCCAACTCGTCCGATTGAAACTCAATCGTGTCAAAGTCCATTTGTTGCCTGTTGTCGCCCTTGACCTTTCTTTCTTTGCTTCTCTTAGGGTTCGCAATAAGAACTTCTTCTCTCTCGATTACGATTACATTGGGGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATATGTGAGCTCTCAGGGCGGTCGAGTTTCTGCTCGAGGCTCTTCTTATGTGAATGCCACTCTCGACTTGAATGGGTTTGAAGTCGTTCACGACGTCTTGTACTTGCTTGCGGATCTGGGGAAGGGTATCATTCCCTTCGATACGGAGACGGAAGTGGAAGGATCCATGGGGATTCTCTTTATCAAATTCCCGATTAAGGTAATGTTGATTTTGATTCTGTTTTTCACAATAAATCAAAGCTTTACTCGGAATTGTGAATTGGTTCGATGTTGA

Coding sequence (CDS)

ATGACCTCCAGTTCCAGGGACGATTCTGTCCCTGTGCCCTACACTCTTCTTCCCCAAAATGCTGCACAGCAAAACGTCGTCGTTTTATCCCTCTACCGTCCCCCTCCATGCCGACATCGGCGGCTTCTCCGCCTCTGTGCTCTCTACTCCGCCGCCTTCCTCCTCCTCTTCACCGTTGCTTTTCTACTTTTCCCCTCCGATCCTTCGCTCCAACTCGTCCGATTGAAACTCAATCGTGTCAAAGTCCATTTGTTGCCTGTTGTCGCCCTTGACCTTTCTTTCTTTGCTTCTCTTAGGGTTCGCAATAAGAACTTCTTCTCTCTCGATTACGATTACATTGGGGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATATGTGAGCTCTCAGGGCGGTCGAGTTTCTGCTCGAGGCTCTTCTTATGTGAATGCCACTCTCGACTTGAATGGGTTTGAAGTCGTTCACGACGTCTTGTACTTGCTTGCGGATCTGGGGAAGGGTATCATTCCCTTCGATACGGAGACGGAAGTGGAAGGATCCATGGGGATTCTCTTTATCAAATTCCCGATTAAGGTAATGTTGATTTTGATTCTGTTTTTCACAATAAATCAAAGCTTTACTCGGAATTGTGAATTGGTTCGATGTTGA

Protein sequence

MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVAFLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYRGRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGSMGILFIKFPIKVMLILILFFTINQSFTRNCELVRC

Homology

[Close]

BLAST of HG10007955 vs. NCBI nr
Match: XP_004148717.1 (uncharacterized protein LOC101219269 [Cucumis sativus] >KGN65355.1 hypothetical protein Csa_019564 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 8.9e-89
Identity = 176/206 (85.44%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVA 60
           MTSSS DDSVPVPYTL+P NAAQQNVVVLSLYRPPPCRHRRLLRLCA YSAAFLLLF VA
Sbjct: 1   MTSSSGDDSVPVPYTLIPSNAAQQNVVVLSLYRPPPCRHRRLLRLCAFYSAAFLLLFAVA 60

Query: 61  FLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYR 120
           FLLFPSDPSLQLVRLKLNRVKVHL+PVV+LDLSF  SLRVRNKNFFSL+Y+++GVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNRVKVHLVPVVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYR 120

Query: 121 GRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGS 180
           GRRLGYVSS+GGRVSARGSSYVNATLDLNG EVVHDVLYLLADLGKGIIPFDTET+VEGS
Sbjct: 121 GRRLGYVSSEGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETDVEGS 180

Query: 181 MGILFIKFPIKVMLIL-ILFFTINQS 206
           MG+ FIK PIK  +   +L  T NQ+
Sbjct: 181 MGLFFIKIPIKARVSCEVLVNTNNQT 206

[Close]

BLAST of HG10007955 vs. NCBI nr
Match: XP_038878687.1 (uncharacterized protein LOC120070868 [Benincasa hispida])

HSP 1 Score: 330.5 bits (846), Expect = 1.1e-86
Identity = 174/193 (90.16%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MTSSSR-DDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTV 60
           MTSSSR DDSVPVPYTLLPQNAAQQNVVVLSLYR PPC+H RLLRLCALYSAAFLLLF V
Sbjct: 37  MTSSSRDDDSVPVPYTLLPQNAAQQNVVVLSLYRRPPCQHWRLLRLCALYSAAFLLLFAV 96

Query: 61  AFLLFPSDPSLQLVRLKLNRVKVHLLPV-VALDLSFFASLRVRNKNFFSLDYDYIGVSVG 120
           AFLLFP+DPS QLVRLKLN VKVHL+P  V+LDLSFFASLRVRNKNFFSL YDYIGVSVG
Sbjct: 97  AFLLFPADPSFQLVRLKLNHVKVHLVPPGVSLDLSFFASLRVRNKNFFSLHYDYIGVSVG 156

Query: 121 YRGRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVE 180
           YRG+RLG+VSS+GGRVSARGSSYVNATLDLNG EVVHDVLYLLADLGKGIIPFDTETEVE
Sbjct: 157 YRGKRLGFVSSEGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETEVE 216

Query: 181 GSMGILFIKFPIK 192
           GSMG+ FIKFPIK
Sbjct: 217 GSMGLFFIKFPIK 229

[Close]

BLAST of HG10007955 vs. NCBI nr
Match: KAA0046596.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isoform 1 [Cucumis melo var. makuwa] >TYK00100.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 2.1e-85
Identity = 170/195 (87.18%), Postives = 179/195 (91.79%), Query Frame = 0


Query: 1   MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVA 60
           MT+SS DDSVPVPYTLL  NAAQQNVVVLSLYRP PCRHRRLLRL A YSAAFLLLF VA
Sbjct: 1   MTTSSGDDSVPVPYTLLSSNAAQQNVVVLSLYRPTPCRHRRLLRLFAFYSAAFLLLFAVA 60

Query: 61  FLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYR 120
           FLLFPSDPSLQLVRLKLNRVKVHL+P V+LDLSF  SLRVRNKNFFSL+Y+++GVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNRVKVHLVPFVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYR 120

Query: 121 GRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGS 180
           GRRLGYVSS GGRVSARGSSYVNATLDLNG EVVHDVLYLLADLGKGIIPFDTETEVEGS
Sbjct: 121 GRRLGYVSSGGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETEVEGS 180

Query: 181 MGILFIKFPIKVMLI 196
           MG+ FIK PIK  +I
Sbjct: 181 MGLFFIKIPIKFAII 195

[Close]

BLAST of HG10007955 vs. NCBI nr
Match: XP_008463384.1 (PREDICTED: uncharacterized protein LOC103501551 [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 7.8e-85
Identity = 173/206 (83.98%), Postives = 184/206 (89.32%), Query Frame = 0


Query: 1   MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVA 60
           MT+SS DDSVPVPYTLL  NAAQQNVVVLSLYRP PCRHRRLLRL A YSAAFLLLF VA
Sbjct: 1   MTTSSGDDSVPVPYTLLSSNAAQQNVVVLSLYRPTPCRHRRLLRLFAFYSAAFLLLFAVA 60

Query: 61  FLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYR 120
           FLLFPSDPSLQLVRLKLNRVKVHL+P V+LDLSF  SLRVRNKNFFSL+Y+++GVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNRVKVHLVPFVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYR 120

Query: 121 GRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGS 180
           GRRLGYVSS GGRVSARGSSYVNATLDLNG EVVHDVLYLLADLGKGIIPFDTETEVEGS
Sbjct: 121 GRRLGYVSSGGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETEVEGS 180

Query: 181 MGILFIKFPIKVMLIL-ILFFTINQS 206
           MG+ FIK PIK  +   +L  T NQ+
Sbjct: 181 MGLFFIKIPIKARVSCEVLVNTNNQT 206

[Close]

BLAST of HG10007955 vs. NCBI nr
Match: XP_022144909.1 (uncharacterized protein LOC111014473 [Momordica charantia])

HSP 1 Score: 307.8 bits (787), Expect = 7.6e-80
Identity = 160/203 (78.82%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 1   MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVA 60
           MTSSSRDDSVPVPY+LLP NAA QNVVVLSLYRPP  R RRLLRLCA YSAAFLLL  VA
Sbjct: 1   MTSSSRDDSVPVPYSLLPPNAAHQNVVVLSLYRPPRFRRRRLLRLCAFYSAAFLLLSAVA 60

Query: 61  FLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYR 120
           FLLFP+DPSLQLVRLKLNR+KV LLPV+ LDLSF AS+RVRN NFFSLDY+Y+GVSVGYR
Sbjct: 61  FLLFPADPSLQLVRLKLNRLKVRLLPVLLLDLSFSASVRVRNNNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGS 180
           GRRLG+VSS+GGRVSARG SYVNATLDLNGFEV+HD +YL+ DL  GI+PFDTETEVEG 
Sbjct: 121 GRRLGFVSSEGGRVSARGLSYVNATLDLNGFEVIHDGIYLIEDLATGIVPFDTETEVEGY 180

Query: 181 MGILFIKFPIKVMLILILFFTIN 204
           MG+ FIKFPIK  +   +F   N
Sbjct: 181 MGLFFIKFPIKARVSCEVFVNTN 203

[Close]

BLAST of HG10007955 vs. ExPASy TrEMBL
Match: A0A0A0LTV4 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G369500 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.3e-89
Identity = 176/206 (85.44%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVA 60
           MTSSS DDSVPVPYTL+P NAAQQNVVVLSLYRPPPCRHRRLLRLCA YSAAFLLLF VA
Sbjct: 1   MTSSSGDDSVPVPYTLIPSNAAQQNVVVLSLYRPPPCRHRRLLRLCAFYSAAFLLLFAVA 60

Query: 61  FLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYR 120
           FLLFPSDPSLQLVRLKLNRVKVHL+PVV+LDLSF  SLRVRNKNFFSL+Y+++GVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNRVKVHLVPVVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYR 120

Query: 121 GRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGS 180
           GRRLGYVSS+GGRVSARGSSYVNATLDLNG EVVHDVLYLLADLGKGIIPFDTET+VEGS
Sbjct: 121 GRRLGYVSSEGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETDVEGS 180

Query: 181 MGILFIKFPIKVMLIL-ILFFTINQS 206
           MG+ FIK PIK  +   +L  T NQ+
Sbjct: 181 MGLFFIKIPIKARVSCEVLVNTNNQT 206

[Close]

BLAST of HG10007955 vs. ExPASy TrEMBL
Match: A0A5A7TX90 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00560 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.0e-85
Identity = 170/195 (87.18%), Postives = 179/195 (91.79%), Query Frame = 0


Query: 1   MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVA 60
           MT+SS DDSVPVPYTLL  NAAQQNVVVLSLYRP PCRHRRLLRL A YSAAFLLLF VA
Sbjct: 1   MTTSSGDDSVPVPYTLLSSNAAQQNVVVLSLYRPTPCRHRRLLRLFAFYSAAFLLLFAVA 60

Query: 61  FLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYR 120
           FLLFPSDPSLQLVRLKLNRVKVHL+P V+LDLSF  SLRVRNKNFFSL+Y+++GVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNRVKVHLVPFVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYR 120

Query: 121 GRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGS 180
           GRRLGYVSS GGRVSARGSSYVNATLDLNG EVVHDVLYLLADLGKGIIPFDTETEVEGS
Sbjct: 121 GRRLGYVSSGGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETEVEGS 180

Query: 181 MGILFIKFPIKVMLI 196
           MG+ FIK PIK  +I
Sbjct: 181 MGLFFIKIPIKFAII 195

[Close]

BLAST of HG10007955 vs. ExPASy TrEMBL
Match: A0A1S3CJK6 (uncharacterized protein LOC103501551 OS=Cucumis melo OX=3656 GN=LOC103501551 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.8e-85
Identity = 173/206 (83.98%), Postives = 184/206 (89.32%), Query Frame = 0


Query: 1   MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVA 60
           MT+SS DDSVPVPYTLL  NAAQQNVVVLSLYRP PCRHRRLLRL A YSAAFLLLF VA
Sbjct: 1   MTTSSGDDSVPVPYTLLSSNAAQQNVVVLSLYRPTPCRHRRLLRLFAFYSAAFLLLFAVA 60

Query: 61  FLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYR 120
           FLLFPSDPSLQLVRLKLNRVKVHL+P V+LDLSF  SLRVRNKNFFSL+Y+++GVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNRVKVHLVPFVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYR 120

Query: 121 GRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGS 180
           GRRLGYVSS GGRVSARGSSYVNATLDLNG EVVHDVLYLLADLGKGIIPFDTETEVEGS
Sbjct: 121 GRRLGYVSSGGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETEVEGS 180

Query: 181 MGILFIKFPIKVMLIL-ILFFTINQS 206
           MG+ FIK PIK  +   +L  T NQ+
Sbjct: 181 MGLFFIKIPIKARVSCEVLVNTNNQT 206

[Close]

BLAST of HG10007955 vs. ExPASy TrEMBL
Match: A0A6J1CTN0 (uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014473 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.7e-80
Identity = 160/203 (78.82%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 1   MTSSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVA 60
           MTSSSRDDSVPVPY+LLP NAA QNVVVLSLYRPP  R RRLLRLCA YSAAFLLL  VA
Sbjct: 1   MTSSSRDDSVPVPYSLLPPNAAHQNVVVLSLYRPPRFRRRRLLRLCAFYSAAFLLLSAVA 60

Query: 61  FLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYR 120
           FLLFP+DPSLQLVRLKLNR+KV LLPV+ LDLSF AS+RVRN NFFSLDY+Y+GVSVGYR
Sbjct: 61  FLLFPADPSLQLVRLKLNRLKVRLLPVLLLDLSFSASVRVRNNNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGS 180
           GRRLG+VSS+GGRVSARG SYVNATLDLNGFEV+HD +YL+ DL  GI+PFDTETEVEG 
Sbjct: 121 GRRLGFVSSEGGRVSARGLSYVNATLDLNGFEVIHDGIYLIEDLATGIVPFDTETEVEGY 180

Query: 181 MGILFIKFPIKVMLILILFFTIN 204
           MG+ FIKFPIK  +   +F   N
Sbjct: 181 MGLFFIKFPIKARVSCEVFVNTN 203

[Close]

BLAST of HG10007955 vs. ExPASy TrEMBL
Match: A0A6J1JI07 (uncharacterized protein LOC111485280 OS=Cucurbita maxima OX=3661 GN=LOC111485280 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.7e-75
Identity = 155/202 (76.73%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 3   SSSRDDSVPVPYTLLPQN-AAQQNVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVAF 62
           S S+D S+PVPY+ +P N AA QNVVVLSLYRPP  R RRLLRLCALYSAAFLLL  V F
Sbjct: 2   SCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAVVF 61

Query: 63  LLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYRG 122
           LLFPSDPSLQLVRLKLN VKV LLP V LDLSF AS+RVRNKNFFSLDY+Y+GVSVG+RG
Sbjct: 62  LLFPSDPSLQLVRLKLNGVKVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGFRG 121

Query: 123 RRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGSM 182
           RRLG+VSS GGRVSARGSSYVNATLDLNG +++HDV +LL DL KGIIPFDTETEVEGSM
Sbjct: 122 RRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSM 181

Query: 183 GILFIKFPIKVMLILILFFTIN 204
           G+ FIKFPIK  +   +F   N
Sbjct: 182 GLFFIKFPIKATVSCEVFVDTN 203

[Close]

BLAST of HG10007955 vs. TAIR 10
Match: AT4G13270.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 181.0 bits (458), Expect = 1.0e-45
Identity = 96/206 (46.60%), Postives = 139/206 (67.48%), Query Frame = 0


Query: 3   SSSRDDSVPVPYTLLPQNAAQQNVVVLSLYRPPPCRHR-----RLLRLCALYSAAFLLLF 62
           +SS+ +   +PYT LP +   Q+V++L+ YR    RHR     R LR   L++A  LLL 
Sbjct: 2   ASSKHEDYGIPYTPLPSSQPSQSVILLTPYR----RHRRPSLLRNLRCSLLFTAVILLLS 61

Query: 63  TVAFLLFPSDPSLQLVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSV 122
              +LL+PSDP + + R+ LN + V     +ALDLSF  +++VRN++FFSLDYD + VS+
Sbjct: 62  AAVYLLYPSDPDITVSRINLNHISVVDSHKIALDLSFSLTIKVRNRDFFSLDYDSLVVSI 121

Query: 123 GYRGRRLGYVSSQGGRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEV 182
           GYRGR LG V S+GG + AR SSY++ATL+L+G EVVHDV+YL+ DL KG+IPFDT  +V
Sbjct: 122 GYRGRELGLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQV 181

Query: 183 EGSMGILFIKFPIKVMLILILFFTIN 204
           +G +G+L    PI+  +   ++  +N
Sbjct: 182 QGDLGVLLFNIPIQGKVSCEVYVNVN 203

[Close]

BLAST of HG10007955 vs. TAIR 10
Match: AT1G52330.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 141.4 bits (355), Expect = 8.7e-34
Identity = 74/198 (37.37%), Postives = 129/198 (65.15%), Query Frame = 0


Query: 14  YTLLPQNAAQQ--NVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVAFLLFPSDPSLQ 73
           Y  LP +++ +  + V++S +  PP R R ++ +  +  A+ L+     ++ +PSDP ++
Sbjct: 16  YKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASILI-----YIFWPSDPRIK 75

Query: 74  LVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYRGRRLGYVSSQG 133
           ++R+K++ V VH  PV ++D++   +L+V N + +S D+  + V++ YRG+ LG+VSS G
Sbjct: 76  IIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDG 135

Query: 134 GRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGSMGILFIKFPIK 193
           G V+A GSSY++A  +L+G  V  DV++L+ DL KG + FDT TE  G +G+LF +FP+K
Sbjct: 136 GHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLK 195

Query: 194 VMLIL-ILFFTINQSFTR 209
             +   IL  T+NQ+ +R
Sbjct: 196 AKVACGILVDTVNQTISR 208

[Close]

BLAST of HG10007955 vs. TAIR 10
Match: AT1G52330.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 138.7 bits (348), Expect = 5.7e-33
Identity = 69/181 (38.12%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 14  YTLLPQNAAQQ--NVVVLSLYRPPPCRHRRLLRLCALYSAAFLLLFTVAFLLFPSDPSLQ 73
           Y  LP +++ +  + V++S +  PP R R ++ +  +  A+ L+     ++ +PSDP ++
Sbjct: 16  YKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASILI-----YIFWPSDPRIK 75

Query: 74  LVRLKLNRVKVHLLPVVALDLSFFASLRVRNKNFFSLDYDYIGVSVGYRGRRLGYVSSQG 133
           ++R+K++ V VH  PV ++D++   +L+V N + +S D+  + V++ YRG+ LG+VSS G
Sbjct: 76  IIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDG 135

Query: 134 GRVSARGSSYVNATLDLNGFEVVHDVLYLLADLGKGIIPFDTETEVEGSMGILFIKFPIK 193
           G V+A GSSY++A  +L+G  V  DV++L+ DL KG + FDT TE  G +G+LF +FP+K
Sbjct: 136 GHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLK 191

The following BLAST results are available for this feature:

BLAST of HG10007955 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148717.1	8.9e-89	85.44	uncharacterized protein LOC101219269 [Cucumis sativus] >KGN65355.1 hypothetical ...	[more]
XP_038878687.1	1.1e-86	90.16	uncharacterized protein LOC120070868 [Benincasa hispida]	[more]
KAA0046596.1	2.1e-85	87.18	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isofor...	[more]
XP_008463384.1	7.8e-85	83.98	PREDICTED: uncharacterized protein LOC103501551 [Cucumis melo]	[more]
XP_022144909.1	7.6e-80	78.82	uncharacterized protein LOC111014473 [Momordica charantia]	[more]

BLAST of HG10007955 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10007955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTV4	4.3e-89	85.44	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G369500 PE=4 ...	[more]
A0A5A7TX90	1.0e-85	87.18	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isofor...	[more]
A0A1S3CJK6	3.8e-85	83.98	uncharacterized protein LOC103501551 OS=Cucumis melo OX=3656 GN=LOC103501551 PE=...	[more]
A0A6J1CTN0	3.7e-80	78.82	uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1JI07	2.7e-75	76.73	uncharacterized protein LOC111485280 OS=Cucurbita maxima OX=3661 GN=LOC111485280...	[more]

BLAST of HG10007955 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13270.1	1.0e-45	46.60	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.1	8.7e-34	37.37	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.2	5.7e-33	38.12	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.1820		coord: 67..193 e-value: 1.6E-5 score: 26.7
None	No IPR available	PANTHER	PTHR31852:SF119	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 5..200
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 5..200
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 53..189
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 98..185 e-value: 2.5E-12 score: 47.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007955.1	HG10007955.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane