HG10007870 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007870
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionmultisubstrate pseudouridine synthase 7 isoform X1
LocationChr10: 16268330 .. 16272317 (+)
RNA-Seq ExpressionHG10007870
SyntenyHG10007870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGGCTGCTAGACCTCATGCCGTTCACACCACCATGGCTAGACAAGGACAGACCAGAGTGGTTACCATTAAAAGGAAGACCTGGACCATATTCTTTGGCGCTGTGACTTCGCGAGTGGTGTCTGGGATTCCTTTCTCCAGATGTCAGTACTATGATCGAGGAGTTCCTCCTCAATCCGCCTTATGGGGAGAAAGACTGGTTTCTTTGGCGTGCTGGTGTATGTGCGATTTTATGGGTTTTGTGGGGGTGAGTGGACAACAAAGTGTTTAGGGGAGTGGAGAGGGATTCTAGGGAGCTTTGGTCCCTTGTTCGTTTTCATGTTTCTTTTTGGGCTTTGATTTCAAAGATCTTTTGTAATTATTCTATAGGCATGATTTCGCATAGTTGGGGTCCCTTCTTGTAAAGGGAGTTCCCCTTTTTGTGGGCTTGATTTTTTGTGTTCTCCTGAATTCTTTCATTCTTTCTCAATGAAAGCCATTTATTTCCATTAAAAAAACCATGAAAGGAAGACTTTCTCGATAGACATAGCCTGAGGTTCTCGTGGCACTAGAGTTCATCTAAAAGACTTATCAAAAGACAAAGCTTTCTCCCTGTTGATTCATTGGAGCACTCTCCAATGGATCTCTACCACCTTCAATACCCTCCCATCGGCTCCTTTTGATCACAAGTTCTTCAAGGAAACTAGGGTTGACAACCAAGTGATATGGATCAAAAAAATATCCAACAGAAGGGTTTCTCTGTGGAACTCGCCAAGCTAGACTACAATGGGGGAAAGTGACGTTTGTTGATCCCACTGGGTGAGCAGAGGAAGGGCTGGAAAGTTTTTTTAAGCCTCACCAACTTTTATAACTCAGAACTCAAAAGCCTCCATTACCATAAATTCGGACCAACATACCTCTTGCAAGGATTTTTGTACAAATAAAGGTGCCAACCAACCTATTAATACAGCAAAAAATGCTTGGAATACAGTGGGGAAGAAAGCATTTACACCCTTATTAGATTTTATGCTTTGTTGTAGGCGTCAGCGAAGAAACGTTTTTGTAATTATAAGTTACGTTTATTGTGCTTGATTGGAGATATTTTTTATAGTTGGTCTCCTATTTTTGTGGGTGTTTGTTAGCCTTGTATTTTTTCAATTTTTTTTCCCAATGAGAGCTTGGTTATTCATGAAAAAAGAAGTTTGGTTTTTAGGAACATTTGTATTCGAAGGCTTAGCCAGAAGATTATGAAAAGTTGTGCTCAAATTGTAAGATACAAAATGTCTTTTGGGGAGAAGGATCGTTTTTTTATGGCTTGCAGAGGTGTATGCGATTATTTGAATTTTGTGGGGTGAGTGGAATAGTAGGGTGTTTAGGGGTGTGGAAAGGGATCCTATGGAGATTTGGTCCCTCCCTCGTTCGTTTTCATGTCTCTTTTGTAACTACTTTATAGGCATTATTTTGGATAAGACTCTATAAGCTCTATTTTGCATAGCTGGAGTCTCTTTTTGTAGAGGGAGTTCCCTTTTTTGTGGGCTTGTTTTTTGTATGGTCGTGTATTCTTTCATTTTTTTTTTCATGATTTTTTTTTAATTTAAAAAAAAAATCAAAATGCCTTTTTATCTCCCTGTAGGCAGATTTCTGAGTGCTGTCTAGTTTGCTAATGAAGACATGAATCATTAGATAAGTATTTATTTTAAATTTTAAATTTTTTTTTTCCAATTAAATACTGAAACGTCTAAGATTTGGTAGATTGGACATTCTTAGGTTTGGGTTATGGTAGAAAGGGCTTTGGTTCAAAACAAAGATTGTTTATTTTCAGCTAGCTACCTTGTTTTCCTTTCCATTAATGGGAAATTCAAGTGCAAAACATTTGCTGCCTTGGAGGGCAAGGCAATTGCAACCTGTTACCTTTCATTTCACTTTACTGGCATGTCTTGAGGAGACTTCAAGATTGGTGTGAAGATCTTGGCATTATTTAAGGTTTTTATATTGGCATCGAATGTCCATTATTTAATTCATTTCACTTTACTGGCATCCAAAGTCGATTATTTTTCAGTTGAATGATGACATGACATCATGTTACAAGTTGTATGTTGTTGCAAGACATCTTGATCTTTTTGGAGATTGGTGTTTGGTTGTCATTTAGATCATAGATGATTATGGGTAAAGGATGATGTCTTTGGAGAAATGTATAGTTAAACCGTTTGAGCATCCCCTACTTTTCAGGTATGTGCATAGTTACCAAAGCTATTTATGGAATCATGCAGCAAGTATGAGAGTGCAAAAATACGGTGTGCTTCCATAATTATCTACTTCTGGTATATGATCTTCACGATCAAGATCATTGTAAAAGGTATGTTAGGTAGTAACCATTTGTGCCATAATTTCTGTGGTTTCACCATGTAACAGGGATTGACAAAGTGGTTGTTGGAGACTTGGTATACTGTAAAGAAAACCATACTGAAACAACTGCAGTTCAAAATTTTGAAGAATATGAAAATGAGGACTGTGGCGATGCTAATTCATACGATTCTTGTCATTTAGAGGAAATGTGCAAGCTAGATCCTCCAACAGAAAGAAATAAGCTAGTGAAGGTTGGTCCCCAGTCCTAGCACTCAAAATATGATCCTAGAGATTTTTCTACTATTACTTATTATTGGCCGAGCCTGGTATTTGTGGTTTACGTGCCAACTTGGTCCATTTTGGGTGGGGTTATTTTATATTGATGAACACCAAATACCCTTGCAATTTATACAATAGTAAAAAAAAAAAAAAAAAGAGGATTTTCTAGGATCTTTTGTTAAACAACTTTAAGTTACAATGGATAGACATTTGTTTATTTATTTTTATACGAAACAAGGAAAGTATGTGATAGAGGGGCATTTTGGGAAAATCTGTTTGTTTAGATTGTCTTTAAATATTTTAATGTAAGCATTTATTTTAGTTTAGGTGTGATCCAACCCTTCCCCTTTGGGTCTATTTAAAGGGACCTAGGTCCAAGATTCTAGTCTTCATCAGAATGTTAGGGTAACAACCATCAAACTTTAGAAACTAAATTTATAATTTAATGAACTCTTTTTCCTATTGGTGGGATATGGTAGACAATTATCTATATGACTATATAGTGTATATATATATATATATATATATATATATATATATATATATATATATATTAGAAACTGAACTTTTATTGAGAAGAAAATTAAAATAATTCAACTACAAAAAAGAGCCAAACTGAAAAAGGGACTTTAGTCAAGTAAAATAAGACCTAAATAAGACGTAAATGATATTTAAAAAATAACTTCATCATTGAAACCCAAAGTGAAACATGGAATCTTACCATAGGACGAGACATCATGCAAAGATCTCTTAAGCCTTTTAAATATTATGTCATTTCTCTCTCTCAAAAGATTTCACAAGATCATACAAATCTTGACTCATCGCAAAAACTTTCCTTCATCATGGAGTGGTGAGTGAAGAAGTAATTCCTTGATTGCCTCTCTACAACCTTGAGATTTGAGTCATTTGACAAATCACAAGTCATACCTCTCTGGAATTAGGATCCATATACTTTTTCCCAGTTTCTATCTATTTCTGAACAAAACTGTAATCTCATTTTGAATCCATCTTGTGGCAAGTTGATGTGAATTGTATATTTGTGGGTCTATGCATTCTCTTAGTAAATTTTTGGAACTGGATATTTTTCTCTACATACGTTATTGAAATTAATATTAGTCTTGAAATCTGACAGGCTGTAACTGCAGAAGATATCCTCACTGGAAACTTTACTATTAATGACGTTGTTCTTCCGTTGCCTGGGTGAGGGTAGAAAATATTTCTGACCTGTTGAAAATTTATTTTGGTCTTTTAGTTGTTGTTAACGTAGTTATTTGATTTATTTGTTTGTTTATTTCAACAGGTCAAGAGTAATCTATCCCACAAATGATATTGCTGAAGTGTATAATGATTTAGCAACTAAGGTCCTTTATTATTCTTAG

mRNA sequence

ATGTCTTCGGCTGCTAGACCTCATGCCGTTCACACCACCATGGCTAGACAAGGACAGACCAGAGTGGTTACCATTAAAAGGAAGACCTGGACCATATTCTTTGGCGCTGTGACTTCGCGAGTGGTGTCTGGGATTCCTTTCTCCAGATGTCAGTACTATGATCGAGGAGTTCCTCCTCAATCCGCCTTATGGGGAGAAAGACTGGTTTCTTTGGCGTGCTGGTGGATTGACAAAGTGGTTGTTGGAGACTTGGTATACTGTAAAGAAAACCATACTGAAACAACTGCAGTTCAAAATTTTGAAGAATATGAAAATGAGGACTGTGGCGATGCTAATTCATACGATTCTTGTCATTTAGAGGAAATGTGCAAGCTAGATCCTCCAACAGAAAGAAATAAGCTAGTGAAGGCTGTAACTGCAGAAGATATCCTCACTGGAAACTTTACTATTAATGACGTTGTTCTTCCGTTGCCTGGGTCAAGAGTAATCTATCCCACAAATGATATTGCTGAAGTGTATAATGATTTAGCAACTAAGGTCCTTTATTATTCTTAG

Coding sequence (CDS)

ATGTCTTCGGCTGCTAGACCTCATGCCGTTCACACCACCATGGCTAGACAAGGACAGACCAGAGTGGTTACCATTAAAAGGAAGACCTGGACCATATTCTTTGGCGCTGTGACTTCGCGAGTGGTGTCTGGGATTCCTTTCTCCAGATGTCAGTACTATGATCGAGGAGTTCCTCCTCAATCCGCCTTATGGGGAGAAAGACTGGTTTCTTTGGCGTGCTGGTGGATTGACAAAGTGGTTGTTGGAGACTTGGTATACTGTAAAGAAAACCATACTGAAACAACTGCAGTTCAAAATTTTGAAGAATATGAAAATGAGGACTGTGGCGATGCTAATTCATACGATTCTTGTCATTTAGAGGAAATGTGCAAGCTAGATCCTCCAACAGAAAGAAATAAGCTAGTGAAGGCTGTAACTGCAGAAGATATCCTCACTGGAAACTTTACTATTAATGACGTTGTTCTTCCGTTGCCTGGGTCAAGAGTAATCTATCCCACAAATGATATTGCTGAAGTGTATAATGATTTAGCAACTAAGGTCCTTTATTATTCTTAG

Protein sequence

MSSAARPHAVHTTMARQGQTRVVTIKRKTWTIFFGAVTSRVVSGIPFSRCQYYDRGVPPQSALWGERLVSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCHLEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLATKVLYYS
Homology
[Close]
BLAST of HG10007870 vs. NCBI nr
Match: XP_038878534.1 (multisubstrate pseudouridine synthase 7 isoform X4 [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 7.5e-52
Identity = 104/124 (83.87%), Postives = 112/124 (90.32%), Query Frame = 0 

Query: 60  QSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCH 119
           QS LW     + +  + IDKVVVGDLVYCKENHTET AVQNFEEYENEDCGDANSYDSCH
Sbjct: 449 QSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNFEEYENEDCGDANSYDSCH 508

Query: 120 LEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLAT 179
           LEEMCKLDPPTERNKLVKAVTAED+L+GNFTI+DVVLPLPGSRVIYPTNDIAEVYNDLAT
Sbjct: 509 LEEMCKLDPPTERNKLVKAVTAEDLLSGNFTIDDVVLPLPGSRVIYPTNDIAEVYNDLAT 568

Query: 180 KVLY 183
           K ++
Sbjct: 569 KGIF 572

[Close]
BLAST of HG10007870 vs. NCBI nr
Match: XP_038878530.1 (pseudouridylate synthase 7 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-51
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 0 

Query: 60  QSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCH 119
           QS LW     + +  + IDKVVVGDLVYCKENHTET AVQNFEEYENEDCGDANSYDSCH
Sbjct: 449 QSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNFEEYENEDCGDANSYDSCH 508

Query: 120 LEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLAT 179
           LEEMCKLDPPTERNKLVKAVTAED+L+GNFTI+DVVLPLPGSRVIYPTNDIAEVYNDLAT
Sbjct: 509 LEEMCKLDPPTERNKLVKAVTAEDLLSGNFTIDDVVLPLPGSRVIYPTNDIAEVYNDLAT 568

[Close]
BLAST of HG10007870 vs. NCBI nr
Match: XP_038878531.1 (pseudouridylate synthase 7 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-51
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 0 

Query: 60  QSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCH 119
           QS LW     + +  + IDKVVVGDLVYCKENHTET AVQNFEEYENEDCGDANSYDSCH
Sbjct: 449 QSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNFEEYENEDCGDANSYDSCH 508

Query: 120 LEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLAT 179
           LEEMCKLDPPTERNKLVKAVTAED+L+GNFTI+DVVLPLPGSRVIYPTNDIAEVYNDLAT
Sbjct: 509 LEEMCKLDPPTERNKLVKAVTAEDLLSGNFTIDDVVLPLPGSRVIYPTNDIAEVYNDLAT 568

[Close]
BLAST of HG10007870 vs. NCBI nr
Match: TYK28794.1 (pseudouridylate synthase 7-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-48
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 0 

Query: 76  IDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCHLEEMCKLDPPTERNKLV 135
           IDKVVVGDLVYCKENHTET AVQN EEYE+EDCGDANSYDSCHLEEMCKL  PTERNKLV
Sbjct: 5   IDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLV 64

Query: 136 KAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLATKVLY 183
           KAVTAED+L+GNFTI+DVVLPLPGSRV+YP NDIAEVYNDLATKVLY
Sbjct: 65  KAVTAEDVLSGNFTIDDVVLPLPGSRVLYPANDIAEVYNDLATKVLY 111

[Close]
BLAST of HG10007870 vs. NCBI nr
Match: KAA0062573.1 (pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-47
Identity = 98/121 (80.99%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 60  QSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCH 119
           QS LW     + +  + IDKVVVGDLVYCKENHTET AVQN EEYE+EDCGDANSYDSCH
Sbjct: 413 QSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCH 472

Query: 120 LEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLAT 179
           LEEMCKL  PTERNKLVKAVTAED+L+GNFTI+DVVLPLPGSRV+YP NDIAEVYNDLAT
Sbjct: 473 LEEMCKLGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGSRVLYPANDIAEVYNDLAT 532

[Close]
BLAST of HG10007870 vs. ExPASy Swiss-Prot
Match: O74343 (Multisubstrate pseudouridine synthase 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pus7 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 40/137 (29.20%), Postives = 62/137 (45.26%), Query Frame = 0 

Query: 47  FSRCQYYDRGVPP---QSALWGERLVSLACWWI----DKVVVGDLVYCKENHTETTAVQN 106
           F R   + R + P   QS +W      +A W I    D+ VVGDLVY     TE+  +  
Sbjct: 452 FQRIPRHLRSIYPHAYQSYVWNR----VASWRIKNLGDRPVVGDLVY----STESNGLSQ 511

Query: 107 FEEYENEDCGDANSYDSCHLEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPG 166
                + +  D        LE++     P       + +  +++   NF+I D+VLPLPG
Sbjct: 512 KSPIVDPEAPDL-------LEDL-----PVSSKLSARPIEEDEV--NNFSIYDIVLPLPG 566

Query: 167 SRVIYPTNDIAEVYNDL 177
             VIYP N+  ++Y  +
Sbjct: 572 RNVIYPKNETFDIYKSV 566

[Close]
BLAST of HG10007870 vs. ExPASy TrEMBL
Match: A0A5D3DZ61 (Pseudouridylate synthase 7-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001600 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.4e-48
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 0 

Query: 76  IDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCHLEEMCKLDPPTERNKLV 135
           IDKVVVGDLVYCKENHTET AVQN EEYE+EDCGDANSYDSCHLEEMCKL  PTERNKLV
Sbjct: 5   IDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLV 64

Query: 136 KAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLATKVLY 183
           KAVTAED+L+GNFTI+DVVLPLPGSRV+YP NDIAEVYNDLATKVLY
Sbjct: 65  KAVTAEDVLSGNFTIDDVVLPLPGSRVLYPANDIAEVYNDLATKVLY 111

[Close]
BLAST of HG10007870 vs. ExPASy TrEMBL
Match: A0A0A0LY46 (TRUD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G690320 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.2e-48
Identity = 99/124 (79.84%), Postives = 109/124 (87.90%), Query Frame = 0 

Query: 60  QSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCH 119
           QS LW     + +  + IDKVVVGDLVYCKENHTET AVQN EEYE+EDCGDANSYDSCH
Sbjct: 297 QSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCH 356

Query: 120 LEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLAT 179
           LEE+CKL  PTER+KLVKAVTA D+L+GNFTI+DVVLPLPGSRV+YPTNDIAEVYNDLAT
Sbjct: 357 LEEVCKLGLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVYNDLAT 416

Query: 180 KVLY 183
           KVLY
Sbjct: 417 KVLY 420

[Close]
BLAST of HG10007870 vs. ExPASy TrEMBL
Match: A0A5A7V3D9 (Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00610 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 9.2e-48
Identity = 98/121 (80.99%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 60  QSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCH 119
           QS LW     + +  + IDKVVVGDLVYCKENHTET AVQN EEYE+EDCGDANSYDSCH
Sbjct: 413 QSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCH 472

Query: 120 LEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLAT 179
           LEEMCKL  PTERNKLVKAVTAED+L+GNFTI+DVVLPLPGSRV+YP NDIAEVYNDLAT
Sbjct: 473 LEEMCKLGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGSRVLYPANDIAEVYNDLAT 532

[Close]
BLAST of HG10007870 vs. ExPASy TrEMBL
Match: A0A1S3CHJ1 (pseudouridylate synthase 7 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501017 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 9.2e-48
Identity = 98/121 (80.99%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 60  QSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCH 119
           QS LW     + +  + IDKVVVGDLVYCKENHTET AVQN EEYE+EDCGDANSYDSCH
Sbjct: 450 QSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCH 509

Query: 120 LEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLAT 179
           LEEMCKL  PTERNKLVKAVTAED+L+GNFTI+DVVLPLPGSRV+YP NDIAEVYNDLAT
Sbjct: 510 LEEMCKLGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGSRVLYPANDIAEVYNDLAT 569

[Close]
BLAST of HG10007870 vs. ExPASy TrEMBL
Match: A0A1S3CI40 (pseudouridylate synthase 7 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501017 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 9.2e-48
Identity = 98/121 (80.99%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 60  QSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQNFEEYENEDCGDANSYDSCH 119
           QS LW     + +  + IDKVVVGDLVYCKENHTET AVQN EEYE+EDCGDANSYDSCH
Sbjct: 420 QSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCH 479

Query: 120 LEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLPGSRVIYPTNDIAEVYNDLAT 179
           LEEMCKL  PTERNKLVKAVTAED+L+GNFTI+DVVLPLPGSRV+YP NDIAEVYNDLAT
Sbjct: 480 LEEMCKLGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGSRVLYPANDIAEVYNDLAT 539

[Close]
BLAST of HG10007870 vs. TAIR 10
Match: AT3G04820.1 (Pseudouridine synthase family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-17
Identity = 54/141 (38.30%), Postives = 80/141 (56.74%), Query Frame = 0 

Query: 40  RVVSGIPFSRCQYYDRGVPPQSALWGERL-VSLACWWIDKVVVGDLVYCKENHTETTAVQ 99
           + + GIP +    Y      QS LW     + +  +   +VV+GDLV  K +  +   V 
Sbjct: 432 QALKGIPRTLRMMYVHSY--QSYLWNNAASLRVKNYGTSQVVLGDLVSTKVDAAK-RMVD 491

Query: 100 NFEEYENEDCGDANSYDSCHLEEMCKLDPPTERNKLVKAVTAEDILTGNFTINDVVLPLP 159
           +     NE   +A   D   +++   +D P ER+ LVK V+ ED+  G ++ +D+VLPLP
Sbjct: 492 SLTSEHNESSEEA--LDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYSTSDIVLPLP 551

Query: 160 GSRVIYPTNDIAEVYNDLATK 180
           GSRVIYP+NDIAE+Y+DLA K
Sbjct: 552 GSRVIYPSNDIAEIYHDLAKK 567

The following BLAST results are available for this feature:
BLAST of HG10007870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038878534.17.5e-5283.87multisubstrate pseudouridine synthase 7 isoform X4 [Benincasa hispida][more]
XP_038878530.11.3e-5185.95pseudouridylate synthase 7 homolog isoform X1 [Benincasa hispida][more]
XP_038878531.11.3e-5185.95pseudouridylate synthase 7 homolog isoform X2 [Benincasa hispida][more]
TYK28794.12.9e-4890.65pseudouridylate synthase 7-like protein isoform X2 [Cucumis melo var. makuwa][more]
KAA0062573.11.9e-4780.99pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa][more]
BLAST of HG10007870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O743435.4e-0529.20Multisubstrate pseudouridine synthase 7 OS=Schizosaccharomyces pombe (strain 972... [more]
BLAST of HG10007870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DZ611.4e-4890.65Pseudouridylate synthase 7-like protein isoform X2 OS=Cucumis melo var. makuwa O... [more]
A0A0A0LY463.2e-4879.84TRUD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G690320 PE=3 S... [more]
A0A5A7V3D99.2e-4880.99Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa O... [more]
A0A1S3CHJ19.2e-4880.99pseudouridylate synthase 7 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035... [more]
A0A1S3CI409.2e-4880.99pseudouridylate synthase 7 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC1035... [more]
BLAST of HG10007870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G04820.11.3e-1738.30Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042214Pseudouridine synthase, TruD, catalytic domainGENE3D3.30.2350.20TruD, catalytic domaincoord: 59..180
e-value: 1.3E-11
score: 46.5
IPR001656Pseudouridine synthase, TruDPANTHERPTHR13326TRNA PSEUDOURIDINE SYNTHASE Dcoord: 27..178
NoneNo IPR availablePANTHERPTHR13326:SF21PSEUDOURIDYLATE SYNTHASE 7 HOMOLOGcoord: 27..178
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 60..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007870.1HG10007870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0008033 tRNA processing
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding