HG10007866 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007866
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr10: 16178114 .. 16178281 (-)
RNA-Seq ExpressionHG10007866
SyntenyHG10007866
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCACAAACCCTTCCTGCACTATGATGTACTTTCCATAGTATTTGGTAAAGATAGGGCTACTGGTGAGAATTGTGTGACTCCTAATGATCGATGCTCTGAAATGTTTGAACGCACCGAAGATGTTAGAATGGGATCCCAGGAGAATGAGCTGCCAGAAAACTGA

mRNA sequence

ATGAGGCACAAACCCTTCCTGCACTATGATGTACTTTCCATAGTATTTGGTAAAGATAGGGCTACTGGTGAGAATTGTGTGACTCCTAATGATCGATGCTCTGAAATGTTTGAACGCACCGAAGATGTTAGAATGGGATCCCAGGAGAATGAGCTGCCAGAAAACTGA

Coding sequence (CDS)

ATGAGGCACAAACCCTTCCTGCACTATGATGTACTTTCCATAGTATTTGGTAAAGATAGGGCTACTGGTGAGAATTGTGTGACTCCTAATGATCGATGCTCTGAAATGTTTGAACGCACCGAAGATGTTAGAATGGGATCCCAGGAGAATGAGCTGCCAGAAAACTGA

Protein sequence

MRHKPFLHYDVLSIVFGKDRATGENCVTPNDRCSEMFERTEDVRMGSQENELPEN
Homology
BLAST of HG10007866 vs. NCBI nr
Match: XP_038877524.1 (uncharacterized protein LOC120069782 [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-09
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1   MRHKPFLHYDVLSIVFGKDRATGENCVTPNDRCSEMFERTEDVRMGSQENELPEN 56
           ++HKPFL+YD LSIVFGKDRAT E   TP D+ S   E  ED+R+GSQ NE  E+
Sbjct: 51  LKHKPFLYYDELSIVFGKDRATSEGSETPYDQASATDEHLEDIRLGSQVNEQQES 105

BLAST of HG10007866 vs. NCBI nr
Match: XP_038887032.1 (uncharacterized protein LOC120077200 [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 7.5e-08
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 1  MRHKPFLHYDVLSIVFGKDRATGENCVTPNDRCSEMFERTEDVRMGSQENE 52
          +RHKPF HYD LSIVFGKDRA GE   TP D+ S   E  ED+ +GSQ NE
Sbjct: 38 LRHKPFPHYDELSIVFGKDRAIGEGSDTPYDQASATDEHLEDIWLGSQVNE 88

BLAST of HG10007866 vs. NCBI nr
Match: XP_038889264.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 1   MRHKPFLHYDVLSIVFGKDRATGENCVTPNDRCSEMFERTEDVRMGSQENE 52
           +RHKPF H D LSIVFGKDRAT E   TP D+ S   E  ED+R+ SQ NE
Sbjct: 119 LRHKPFPHCDELSIVFGKDRATSEGSKTPFDQASATDEHLEDIRLKSQVNE 169

BLAST of HG10007866 vs. NCBI nr
Match: OMO94273.1 (hypothetical protein CCACVL1_06080 [Corchorus capsularis])

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 1   MRHKPFLHYDVLSIVFGKDRATGENCVTPNDRCSEMFERTEDVRMGSQENE 52
           +R KPFLHY+ LS+++GKDRA G    TP D C E+ +  +    G +E E
Sbjct: 300 LRGKPFLHYETLSVIYGKDRANGTGAETPADACEEIDDEDDSNGEGDEEAE 350

BLAST of HG10007866 vs. NCBI nr
Match: XP_038904322.1 (uncharacterized protein LOC120090676 [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 1  MRHKPFLHYDVLSIVFGKDRATGENCVTPNDRCSEMFERTED-VRMGSQENELPE 55
          M +KPFLHYD LS VFGKDRA G++   P    +  F   ED +R+GSQ+   PE
Sbjct: 36 MWNKPFLHYDDLSTVFGKDRAVGQSSEDPQVMATNAFIEFEDEIRLGSQDCHTPE 90

BLAST of HG10007866 vs. ExPASy TrEMBL
Match: A0A1R3JHE5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_06080 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 1   MRHKPFLHYDVLSIVFGKDRATGENCVTPNDRCSEMFERTEDVRMGSQENE 52
           +R KPFLHY+ LS+++GKDRA G    TP D C E+ +  +    G +E E
Sbjct: 300 LRGKPFLHYETLSVIYGKDRANGTGAETPADACEEIDDEDDSNGEGDEEAE 350

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877524.16.8e-0960.00uncharacterized protein LOC120069782 [Benincasa hispida][more]
XP_038887032.17.5e-0862.75uncharacterized protein LOC120077200 [Benincasa hispida][more]
XP_038889264.18.3e-0760.78uncharacterized protein At2g29880-like [Benincasa hispida][more]
OMO94273.13.0e-0445.10hypothetical protein CCACVL1_06080 [Corchorus capsularis][more]
XP_038904322.13.9e-0450.91uncharacterized protein LOC120090676 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3JHE51.4e-0445.10Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_06080 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007866.1HG10007866.1mRNA