HG10007854 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007854
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionL10-interacting MYB domain-containing protein-like
LocationChr10: 15928447 .. 15929144 (+)
RNA-Seq ExpressionHG10007854
SyntenyHG10007854
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGGAAATGGTTGGGATCCATTATTGGGCACTATCACTTTAGAAGAGGAGCAATGGAATGATCTTTTTAAGGTATAATTAAATTTCAAGTGCTATTCTTTTTATTTCTAATCATCTATCAAGTTATGGTTGATGTTATATATTGTTGTGCTACTTCTTATAGGTGAATAAGAGAGCTAAAAAGTTAAAAAAAAAAATGGTTGCCCACATTAGGCAAAGCTTATGAGGATTTTTAGAGATACTACTGCTACAGGGGTAAATGCTTACCCATCAACAAAACTTCCTTCAGATTCTGAAGATGAAAATAATGTTGGAAGCAATACGAACTTGGCTGGTGAAGAAAATGATAATGAAAAAAAGTAGAAAACGAGTTCGAAGGAAGAGGGACGAATTTGGTAGTTTCTTTTCTTCATTTATAGATGTGTATGCTGAGAACGCAAGAGAAAAATGACATCCTTGAGAAAAGATCTTTTAGTTCTACCGCCAGTCAAGTTAATGAGGGTCAATCATCAAGGAGAAAAGATGAAGTTGATGAAGAGCTTATGAAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGAACTTGCATGGAGAAAATTATTTTTACTCATGCCTGATTCAAAGAAGAAGGATTTCATAAACAGTATTTAG

mRNA sequence

ATGACAGGAAATGGTTGGGATCCATTATTGGGCACTATCACTTTAGAAGAGGAGCAATGGAATGATCTTTTTAAGATGTGTATGCTGAGAACGCAAGAGAAAAATGACATCCTTGAGAAAAGATCTTTTAGTTCTACCGCCAGTCAAGTTAATGAGGGTCAATCATCAAGGAGAAAAGATGAAGTTGATGAAGAGCTTATGAAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGAACTTGCATGGAGAAAATTATTTTTACTCATGCCTGATTCAAAGAAGAAGGATTTCATAAACAGTATTTAG

Coding sequence (CDS)

ATGACAGGAAATGGTTGGGATCCATTATTGGGCACTATCACTTTAGAAGAGGAGCAATGGAATGATCTTTTTAAGATGTGTATGCTGAGAACGCAAGAGAAAAATGACATCCTTGAGAAAAGATCTTTTAGTTCTACCGCCAGTCAAGTTAATGAGGGTCAATCATCAAGGAGAAAAGATGAAGTTGATGAAGAGCTTATGAAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGAACTTGCATGGAGAAAATTATTTTTACTCATGCCTGATTCAAAGAAGAAGGATTTCATAAACAGTATTTAG

Protein sequence

MTGNGWDPLLGTITLEEEQWNDLFKMCMLRTQEKNDILEKRSFSSTASQVNEGQSSRRKDEVDEELMKCFKILNTMEDIDGEAYTKVLKLLHGELAWRKLFLLMPDSKKKDFINSI
Homology
[Close]
BLAST of HG10007854 vs. NCBI nr
Match: KAA0037002.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >TYK06650.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 8.3e-33
Identity = 83/185 (44.86%), Postives = 101/185 (54.59%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKMCML------------------------------- 60
           MTGNGWDPLL TI LEEEQWN+LFK+  +                               
Sbjct: 1   MTGNGWDPLLDTINLEEEQWNELFKLVRIFGDTTATGVNACPSTGLISYSEDENENDVTS 60

Query: 61  --------------------------------------RTQEKNDILEKRSFSSTASQVN 117
                                                   + KNDILEKRSF  T+SQV+
Sbjct: 61  NTNFGVEENDKGKSKKQVHRKKDKFGSFFSSFLDVYAENAKRKNDILEKRSFGCTSSQVD 120

[Close]
BLAST of HG10007854 vs. NCBI nr
Match: TYJ96795.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >TYK00864.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >TYK19200.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-31
Identity = 86/203 (42.36%), Postives = 105/203 (51.72%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKM-----------C-----MLR-------------- 60
           MTGNGWDPLLGTI LEEEQWN+LFK+           C     ++R              
Sbjct: 1   MTGNGWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACP 60

Query: 61  ---------------------------------------------------------TQE 117
                                                                     + 
Sbjct: 61  STRLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKR 120

[Close]
BLAST of HG10007854 vs. NCBI nr
Match: KAA0061221.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 6.6e-30
Identity = 85/203 (41.87%), Postives = 104/203 (51.23%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKM-----------C-----MLR-------------- 60
           MTGN WDPLLGTI LEEEQWN+LFK+           C     ++R              
Sbjct: 1   MTGNCWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACP 60

Query: 61  ---------------------------------------------------------TQE 117
                                                                     + 
Sbjct: 61  STRLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDKFGSFFSSFLDVYAENAKR 120

[Close]
BLAST of HG10007854 vs. NCBI nr
Match: TYK06268.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 6.6e-30
Identity = 85/203 (41.87%), Postives = 104/203 (51.23%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKM-----------C-----MLR-------------- 60
           MTGN WDPLLGTI LEEEQWN+LFK+           C     ++R              
Sbjct: 1   MTGNCWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACP 60

Query: 61  ---------------------------------------------------------TQE 117
                                                                     + 
Sbjct: 61  STRLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKR 120

[Close]
BLAST of HG10007854 vs. NCBI nr
Match: KAA0066986.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-29
Identity = 84/203 (41.38%), Postives = 104/203 (51.23%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKM-----------C-----MLR-------------- 60
           MTGNGWDPLLGTI LEEEQWN+LFK+           C     ++R              
Sbjct: 1   MTGNGWDPLLGTINLEEEQWNELFKVNKRTKKFRKSGCPHYEKLVRIFGDTTATGVNACP 60

Query: 61  ---------------------------------------------------------TQE 117
                                                                     + 
Sbjct: 61  STRLISYSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKR 120

[Close]
BLAST of HG10007854 vs. ExPASy TrEMBL
Match: A0A5D3C5P0 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001280 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.0e-33
Identity = 83/185 (44.86%), Postives = 101/185 (54.59%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKMCML------------------------------- 60
           MTGNGWDPLL TI LEEEQWN+LFK+  +                               
Sbjct: 1   MTGNGWDPLLDTINLEEEQWNELFKLVRIFGDTTATGVNACPSTGLISYSEDENENDVTS 60

Query: 61  --------------------------------------RTQEKNDILEKRSFSSTASQVN 117
                                                   + KNDILEKRSF  T+SQV+
Sbjct: 61  NTNFGVEENDKGKSKKQVHRKKDKFGSFFSSFLDVYAENAKRKNDILEKRSFGCTSSQVD 120

[Close]
BLAST of HG10007854 vs. ExPASy TrEMBL
Match: A0A5D3BNQ5 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00100 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 86/203 (42.36%), Postives = 105/203 (51.72%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKM-----------C-----MLR-------------- 60
           MTGNGWDPLLGTI LEEEQWN+LFK+           C     ++R              
Sbjct: 1   MTGNGWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACP 60

Query: 61  ---------------------------------------------------------TQE 117
                                                                     + 
Sbjct: 61  STRLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKR 120

[Close]
BLAST of HG10007854 vs. ExPASy TrEMBL
Match: A0A5D3C535 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00490 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.2e-30
Identity = 85/203 (41.87%), Postives = 104/203 (51.23%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKM-----------C-----MLR-------------- 60
           MTGN WDPLLGTI LEEEQWN+LFK+           C     ++R              
Sbjct: 1   MTGNCWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACP 60

Query: 61  ---------------------------------------------------------TQE 117
                                                                     + 
Sbjct: 61  STRLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKR 120

[Close]
BLAST of HG10007854 vs. ExPASy TrEMBL
Match: A0A5A7V5Z1 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00520 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.2e-30
Identity = 85/203 (41.87%), Postives = 104/203 (51.23%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKM-----------C-----MLR-------------- 60
           MTGN WDPLLGTI LEEEQWN+LFK+           C     ++R              
Sbjct: 1   MTGNCWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACP 60

Query: 61  ---------------------------------------------------------TQE 117
                                                                     + 
Sbjct: 61  STRLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDKFGSFFSSFLDVYAENAKR 120

[Close]
BLAST of HG10007854 vs. ExPASy TrEMBL
Match: A0A5A7VKM6 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G00100 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.3e-30
Identity = 84/203 (41.38%), Postives = 104/203 (51.23%), Query Frame = 0 

Query: 1   MTGNGWDPLLGTITLEEEQWNDLFKM-----------C-----MLR-------------- 60
           MTGNGWDPLLGTI LEEEQWN+LFK+           C     ++R              
Sbjct: 1   MTGNGWDPLLGTINLEEEQWNELFKVNKRTKKFRKSGCPHYEKLVRIFGDTTATGVNACP 60

Query: 61  ---------------------------------------------------------TQE 117
                                                                     + 
Sbjct: 61  STRLISYSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKR 120

The following BLAST results are available for this feature:
BLAST of HG10007854 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037002.18.3e-3344.86L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >T... [more]
TYJ96795.16.0e-3142.36L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >T... [more]
KAA0061221.16.6e-3041.87L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa][more]
TYK06268.16.6e-3041.87L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa][more]
KAA0066986.11.9e-2941.38L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa][more]
BLAST of HG10007854 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10007854 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C5P04.0e-3344.86L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O... [more]
A0A5D3BNQ52.9e-3142.36L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O... [more]
A0A5D3C5353.2e-3041.87L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O... [more]
A0A5A7V5Z13.2e-3041.87L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O... [more]
A0A5A7VKM69.3e-3041.38L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O... [more]
BLAST of HG10007854 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007854.1HG10007854.1mRNA