HG10007832 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007832
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionreceptor-like protein 12
LocationChr10: 14817208 .. 14817711 (-)
RNA-Seq ExpressionHG10007832
SyntenyHG10007832
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGGAGGATGAAATGAGTAGCTCCAAAACTTTGAAAGACAAAGAAGTTCTTGGTATGTTTAATGTTTTGGACATATTATTAGCTATTTATAGTCTGTTAGTTTTAATCATAATTTTGATTTCTTGTTAATCTTTTAGATATGTGTTGTCTCATTTATGGAAAAAGTTTAACAAGGGTTTTCTTCCAAATATGGTGTATTCTTGGACTAACGTAGCCATTGTAGGATTAAAAATATCAGCTCTTGTGAAATATTCTTCCAAATATGGTGTATTCAGTACCTCCATTGGAAGATTATTCAATTTGAGAATATTGATTATGGAAAATAGATTGGAGGAGGTCGGCAATGAATGTTTTATCCCATTTGCAAATTTGGAGGTGTTAGACATATCAGAAAATTTGCTCAAAGGCATTCTTACAGAAGCTGATAATTTTATTCAACTTGCAATTAACTTGCTCAAATGTTTTATCCAACTTGCAATTAACTTCTATATTGGATAG

mRNA sequence

ATGGCGGTGGAGGATGAAATGAGTAGCTCCAAAACTTTGAAAGACAAAGAAGTTCTTGGTATGTTTAATGTTTTGGACATATTATTAGCTATTTATAGTCTATATGTGTTGTCTCATTTATGGAAAAAGTTTAACAAGGGTTTTCTTCCAAATATGGTGTATTCTTGGACTAACGTAGCCATTGTAGGATTAAAAATATCAGCTCTTGTGAAATATTCTTCCAAATATGGTGTATTCAGTACCTCCATTGGAAGATTATTCAATTTGAGAATATTGATTATGGAAAATAGATTGGAGGAGGTCGGCAATGAATGTTTTATCCCATTTGCAAATTTGGAGGTGTTAGACATATCAGAAAATTTGCTCAAAGGCATTCTTACAGAAGCTGATAATTTTATTCAACTTGCAATTAACTTGCTCAAATGTTTTATCCAACTTGCAATTAACTTCTATATTGGATAG

Coding sequence (CDS)

ATGGCGGTGGAGGATGAAATGAGTAGCTCCAAAACTTTGAAAGACAAAGAAGTTCTTGGTATGTTTAATGTTTTGGACATATTATTAGCTATTTATAGTCTATATGTGTTGTCTCATTTATGGAAAAAGTTTAACAAGGGTTTTCTTCCAAATATGGTGTATTCTTGGACTAACGTAGCCATTGTAGGATTAAAAATATCAGCTCTTGTGAAATATTCTTCCAAATATGGTGTATTCAGTACCTCCATTGGAAGATTATTCAATTTGAGAATATTGATTATGGAAAATAGATTGGAGGAGGTCGGCAATGAATGTTTTATCCCATTTGCAAATTTGGAGGTGTTAGACATATCAGAAAATTTGCTCAAAGGCATTCTTACAGAAGCTGATAATTTTATTCAACTTGCAATTAACTTGCTCAAATGTTTTATCCAACTTGCAATTAACTTCTATATTGGATAG

Protein sequence

MAVEDEMSSSKTLKDKEVLGMFNVLDILLAIYSLYVLSHLWKKFNKGFLPNMVYSWTNVAIVGLKISALVKYSSKYGVFSTSIGRLFNLRILIMENRLEEVGNECFIPFANLEVLDISENLLKGILTEADNFIQLAINLLKCFIQLAINFYIG
Homology
[Close]
BLAST of HG10007832 vs. NCBI nr
Match: XP_022929098.1 (probable leucine-rich repeat receptor-like protein kinase At1g35710 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-09
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTE 129
           G   TS GRL NLRIL +E NRLEE+G ECFI   NLEVLDIS NLLKG+L E
Sbjct: 374 GAIPTSFGRLLNLRILSLEWNRLEELGEECFIQLENLEVLDISHNLLKGVLAE 426

[Close]
BLAST of HG10007832 vs. NCBI nr
Match: KAG6579677.1 (Receptor-like protein EIX2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTEA 130
           G   TS GRL NLRIL +E NRLEE+G ECFI   NLEVLDIS N LKG+L+EA
Sbjct: 374 GAIPTSFGRLLNLRILSLEWNRLEELGQECFIQLENLEVLDISNNSLKGVLSEA 427

[Close]
BLAST of HG10007832 vs. NCBI nr
Match: XP_022970144.1 (LRR receptor-like serine/threonine-protein kinase GSO1 [Cucurbita maxima])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTEA 130
           G   TS GRL NLRILI+E NRLEE+G ECFI   NLE LDIS N LKG+L EA
Sbjct: 388 GAIPTSFGRLLNLRILILEWNRLEELGQECFIQLQNLEELDISNNSLKGVLEEA 441

[Close]
BLAST of HG10007832 vs. NCBI nr
Match: XP_022929097.1 (receptor-like protein 12 isoform X2 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTEA 130
           G   T+ G+L NLR LI+  NRLEE+G ECFI   NLEVLDIS NLLKG+L EA
Sbjct: 387 GAIPTTFGKLLNLRKLILGWNRLEELGEECFIQLENLEVLDISHNLLKGVLAEA 440

[Close]
BLAST of HG10007832 vs. NCBI nr
Match: XP_022929096.1 (receptor-like protein 12 isoform X1 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTEA 130
           G   T+ G+L NLR LI+  NRLEE+G ECFI   NLEVLDIS NLLKG+L EA
Sbjct: 387 GAIPTTFGKLLNLRKLILGWNRLEELGEECFIQLENLEVLDISHNLLKGVLAEA 440

[Close]
BLAST of HG10007832 vs. ExPASy TrEMBL
Match: A0A6J1ER26 (probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucurbita moschata OX=3662 GN=LOC111435784 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTE 129
           G   TS GRL NLRIL +E NRLEE+G ECFI   NLEVLDIS NLLKG+L E
Sbjct: 374 GAIPTSFGRLLNLRILSLEWNRLEELGEECFIQLENLEVLDISHNLLKGVLAE 426

[Close]
BLAST of HG10007832 vs. ExPASy TrEMBL
Match: A0A6J1I4N6 (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Cucurbita maxima OX=3661 GN=LOC111469130 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.2e-09
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTEA 130
           G   TS GRL NLRILI+E NRLEE+G ECFI   NLE LDIS N LKG+L EA
Sbjct: 388 GAIPTSFGRLLNLRILILEWNRLEELGQECFIQLQNLEELDISNNSLKGVLEEA 441

[Close]
BLAST of HG10007832 vs. ExPASy TrEMBL
Match: A0A6J1ELT4 (receptor-like protein 12 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435783 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-08
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTEA 130
           G   T+ G+L NLR LI+  NRLEE+G ECFI   NLEVLDIS NLLKG+L EA
Sbjct: 387 GAIPTTFGKLLNLRKLILGWNRLEELGEECFIQLENLEVLDISHNLLKGVLAEA 440

[Close]
BLAST of HG10007832 vs. ExPASy TrEMBL
Match: A0A6J1EM51 (receptor-like protein 12 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435783 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-08
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLRILIME-NRLEEVGNECFIPFANLEVLDISENLLKGILTEA 130
           G   T+ G+L NLR LI+  NRLEE+G ECFI   NLEVLDIS NLLKG+L EA
Sbjct: 387 GAIPTTFGKLLNLRKLILGWNRLEELGEECFIQLENLEVLDISHNLLKGVLAEA 440

[Close]
BLAST of HG10007832 vs. ExPASy TrEMBL
Match: A0A5A7UGL9 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00190 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-07
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 77  GVFSTSIGRLFNLR-ILIMENRLEEVGNECFIPFANLEVLDISENLLKGILTE 129
           G   T+ GRL NLR + + ENRL EVGNECF     LE LDIS NLLKGILTE
Sbjct: 391 GTIPTAFGRLLNLRKLYVQENRLMEVGNECFTQLEKLEELDISRNLLKGILTE 443

The following BLAST results are available for this feature:
BLAST of HG10007832 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929098.18.5e-0969.81probable leucine-rich repeat receptor-like protein kinase At1g35710 [Cucurbita m... [more]
KAG6579677.11.1e-0868.52Receptor-like protein EIX2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022970144.11.9e-0868.52LRR receptor-like serine/threonine-protein kinase GSO1 [Cucurbita maxima][more]
XP_022929097.11.2e-0764.81receptor-like protein 12 isoform X2 [Cucurbita moschata][more]
XP_022929096.11.2e-0764.81receptor-like protein 12 isoform X1 [Cucurbita moschata][more]
BLAST of HG10007832 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10007832 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ER264.1e-0969.81probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucurbita... [more]
A0A6J1I4N69.2e-0968.52LRR receptor-like serine/threonine-protein kinase GSO1 OS=Cucurbita maxima OX=36... [more]
A0A6J1ELT45.9e-0864.81receptor-like protein 12 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11143578... [more]
A0A6J1EM515.9e-0864.81receptor-like protein 12 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143578... [more]
A0A5A7UGL92.9e-0764.15Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
BLAST of HG10007832 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 42..149
e-value: 2.5E-5
score: 25.4
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 79..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007832.1HG10007832.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane