HG10007680 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007680
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ER membrane protein complex subunit 10
Location	Chr10: 9988843 .. 9989215 (-)
RNA-Seq Expression	HG10007680
Synteny	HG10007680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAAGTTTAGATTCAATGGTTTTCACAGAACACCTGTATTTGCCGATGACATTCTTGTTGGTGAGACTGGAGAAGGGGAAGGTGTAAAGCCACCTGAAAAGTCATTTTGGGCTAAATATGTGAGTTTCAAAGAAAGAATAATTGTTCCATAGCCTTAAATTTTGTCATATTCTTACTGGATTTGTATCCCTATTATGCCAGTGGATGTACCTGATACCACTTGGATTGATTGTTATGAATGCCATAACACAAGCAATGAACATGGCTGAAGAACAGGTTAGTGGCCAAGCAGCAGGACAAGCACAGCCACAGCAGTCAGCCGCTGCAATTCAGCGTGGACCAGGGTCTTCTGCAGTAAGACGACGATAG

mRNA sequence

ATGCTCAAGTTTAGATTCAATGGTTTTCACAGAACACCTGTATTTGCCGATGACATTCTTGTTGGTGAGACTGGAGAAGGGGAAGGTGTAAAGCCACCTGAAAAGTCATTTTGGGCTAAATATTGGATGTACCTGATACCACTTGGATTGATTGTTATGAATGCCATAACACAAGCAATGAACATGGCTGAAGAACAGGTTAGTGGCCAAGCAGCAGGACAAGCACAGCCACAGCAGTCAGCCGCTGCAATTCAGCGTGGACCAGGGTCTTCTGCAGTAAGACGACGATAG

Coding sequence (CDS)

ATGCTCAAGTTTAGATTCAATGGTTTTCACAGAACACCTGTATTTGCCGATGACATTCTTGTTGGTGAGACTGGAGAAGGGGAAGGTGTAAAGCCACCTGAAAAGTCATTTTGGGCTAAATATTGGATGTACCTGATACCACTTGGATTGATTGTTATGAATGCCATAACACAAGCAATGAACATGGCTGAAGAACAGGTTAGTGGCCAAGCAGCAGGACAAGCACAGCCACAGCAGTCAGCCGCTGCAATTCAGCGTGGACCAGGGTCTTCTGCAGTAAGACGACGATAG

Protein sequence

MLKFRFNGFHRTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQAAGQAQPQQSAAAIQRGPGSSAVRRR

Homology

[Close]

BLAST of HG10007680 vs. NCBI nr
Match: XP_011660199.1 (ER membrane protein complex subunit 10 [Cucumis sativus] >KAE8653564.1 hypothetical protein Csa_007235 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 5.5e-38
Identity = 88/103 (85.44%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 3   KFRFNGF---------HRTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVM 62
           K+ FN F          RTPVFA+DILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVM
Sbjct: 198 KWSFNSFTFLKSGEQAPRTPVFAEDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVM 257

Query: 63  NAITQAMNMAEEQVSGQAAGQAQPQQSAAAIQRGPGSSAVRRR 97
           NAITQAMNMAEEQVSGQAAGQAQPQQSAAA+QRGPGSSAVRRR
Sbjct: 258 NAITQAMNMAEEQVSGQAAGQAQPQQSAAAVQRGPGSSAVRRR 300

[Close]

BLAST of HG10007680 vs. NCBI nr
Match: KAA0038205.1 (ER membrane protein complex subunit 10 [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTPVFA+DILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ
Sbjct: 52  RTPVFAEDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 111

Query: 71  AAGQAQPQQSAAAIQRGPGSSAVRRR 97
           AAGQAQPQQSAAA+QRGPGSSAVRRR
Sbjct: 112 AAGQAQPQQSAAAVQRGPGSSAVRRR 137

[Close]

BLAST of HG10007680 vs. NCBI nr
Match: XP_008443658.1 (PREDICTED: ER membrane protein complex subunit 10 [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTPVFA+DILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ
Sbjct: 215 RTPVFAEDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 274

Query: 71  AAGQAQPQQSAAAIQRGPGSSAVRRR 97
           AAGQAQPQQSAAA+QRGPGSSAVRRR
Sbjct: 275 AAGQAQPQQSAAAVQRGPGSSAVRRR 300

[Close]

BLAST of HG10007680 vs. NCBI nr
Match: XP_038879061.1 (ER membrane protein complex subunit 10 [Benincasa hispida])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 87/103 (84.47%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 3   KFRFNGF---------HRTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVM 62
           K+ FN F          RTPVFADDILVGE GEGEGVKPPEKSFWAKYWMYLIPLGLIVM
Sbjct: 197 KWSFNSFTFLKSGEQAPRTPVFADDILVGEPGEGEGVKPPEKSFWAKYWMYLIPLGLIVM 256

Query: 63  NAITQAMNMAEEQVSGQAAGQAQPQQSAAAIQRGPGSSAVRRR 97
           NAITQAMNMAEEQVSGQAAGQ QPQQSA AIQRGPGSSAVRRR
Sbjct: 257 NAITQAMNMAEEQVSGQAAGQGQPQQSATAIQRGPGSSAVRRR 299

[Close]

BLAST of HG10007680 vs. NCBI nr
Match: XP_022961188.1 (ER membrane protein complex subunit 10 [Cucurbita moschata])

HSP 1 Score: 160.6 bits (405), Expect = 6.7e-36
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTP+FADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQV GQ
Sbjct: 216 RTPIFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVGGQ 275

Query: 71  AA--GQAQPQQSAAAIQRGPGSSAVRRR 97
           AA  GQAQPQQSAAAIQRGPGSS VRRR
Sbjct: 276 AAGQGQAQPQQSAAAIQRGPGSSTVRRR 303

[Close]

BLAST of HG10007680 vs. ExPASy TrEMBL
Match: A0A5A7T9U1 (ER membrane protein complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00420 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTPVFA+DILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ
Sbjct: 52  RTPVFAEDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 111

Query: 71  AAGQAQPQQSAAAIQRGPGSSAVRRR 97
           AAGQAQPQQSAAA+QRGPGSSAVRRR
Sbjct: 112 AAGQAQPQQSAAAVQRGPGSSAVRRR 137

[Close]

BLAST of HG10007680 vs. ExPASy TrEMBL
Match: A0A1S3B9A8 (ER membrane protein complex subunit 10 OS=Cucumis melo OX=3656 GN=LOC103487208 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTPVFA+DILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ
Sbjct: 215 RTPVFAEDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 274

Query: 71  AAGQAQPQQSAAAIQRGPGSSAVRRR 97
           AAGQAQPQQSAAA+QRGPGSSAVRRR
Sbjct: 275 AAGQAQPQQSAAAVQRGPGSSAVRRR 300

[Close]

BLAST of HG10007680 vs. ExPASy TrEMBL
Match: A0A6J1JBS8 (ER membrane protein complex subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111485353 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTP+FADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQV GQ
Sbjct: 216 RTPIFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVGGQ 275

Query: 71  AA--GQAQPQQSAAAIQRGPGSSAVRRR 97
           AA  GQAQPQQSAAAIQRGPGSS VRRR
Sbjct: 276 AAGQGQAQPQQSAAAIQRGPGSSTVRRR 303

[Close]

BLAST of HG10007680 vs. ExPASy TrEMBL
Match: A0A6J1HB50 (ER membrane protein complex subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111461777 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTP+FADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQV GQ
Sbjct: 216 RTPIFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVGGQ 275

Query: 71  AA--GQAQPQQSAAAIQRGPGSSAVRRR 97
           AA  GQAQPQQSAAAIQRGPGSS VRRR
Sbjct: 276 AAGQGQAQPQQSAAAIQRGPGSSTVRRR 303

[Close]

BLAST of HG10007680 vs. ExPASy TrEMBL
Match: A0A6J1DA53 (ER membrane protein complex subunit 10 OS=Momordica charantia OX=3673 GN=LOC111018286 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.5e-36
Identity = 84/103 (81.55%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 3   KFRFNGF---------HRTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVM 62
           K+ FN F          RTPVFADDILVGE GEGE VKPPEKSFWAKYWMYLIPLGLIVM
Sbjct: 197 KWSFNSFTFLKSGEQAPRTPVFADDILVGEAGEGEDVKPPEKSFWAKYWMYLIPLGLIVM 256

Query: 63  NAITQAMNMAEEQVSGQAAGQAQPQQSAAAIQRGPGSSAVRRR 97
           NAITQAMNMAEEQ  GQAAGQAQPQQS AA+QRGPGSSAVRRR
Sbjct: 257 NAITQAMNMAEEQAGGQAAGQAQPQQSTAAVQRGPGSSAVRRR 299

[Close]

BLAST of HG10007680 vs. TAIR 10
Match: AT1G65270.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 4.9e-21
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTP+F ++IL  E  EGE   PPE+SFWAKYWMYLIPLGL+VMNA+TQA NMAEE   GQ
Sbjct: 220 RTPIFTEEILGSENVEGEVEPPPERSFWAKYWMYLIPLGLVVMNAVTQASNMAEEPAGGQ 279

Query: 71  AAG-QAQP 78
           A G Q QP
Sbjct: 280 AGGAQVQP 287

[Close]

BLAST of HG10007680 vs. TAIR 10
Match: AT1G65270.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 4.9e-21
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTP+F ++IL  E  EGE   PPE+SFWAKYWMYLIPLGL+VMNA+TQA NMAEE   GQ
Sbjct: 220 RTPIFTEEILGSENVEGEVEPPPERSFWAKYWMYLIPLGLVVMNAVTQASNMAEEPAGGQ 279

Query: 71  AAG-QAQP 78
           A G Q QP
Sbjct: 280 AGGAQVQP 287

[Close]

BLAST of HG10007680 vs. TAIR 10
Match: AT1G65270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 4.9e-21
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 11  RTPVFADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 70
           RTP+F ++IL  E  EGE   PPE+SFWAKYWMYLIPLGL+VMNA+TQA NMAEE   GQ
Sbjct: 220 RTPIFTEEILGSENVEGEVEPPPERSFWAKYWMYLIPLGLVVMNAVTQASNMAEEPAGGQ 279

Query: 71  AAG-QAQP 78
           A G Q QP
Sbjct: 280 AGGAQVQP 287

The following BLAST results are available for this feature:

BLAST of HG10007680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660199.1	5.5e-38	85.44	ER membrane protein complex subunit 10 [Cucumis sativus] >KAE8653564.1 hypotheti...	[more]
KAA0038205.1	7.1e-38	97.67	ER membrane protein complex subunit 10 [Cucumis melo var. makuwa]	[more]
XP_008443658.1	7.1e-38	97.67	PREDICTED: ER membrane protein complex subunit 10 [Cucumis melo]	[more]
XP_038879061.1	6.0e-37	84.47	ER membrane protein complex subunit 10 [Benincasa hispida]	[more]
XP_022961188.1	6.7e-36	94.32	ER membrane protein complex subunit 10 [Cucurbita moschata]	[more]

BLAST of HG10007680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10007680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9U1	3.5e-38	97.67	ER membrane protein complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3B9A8	3.5e-38	97.67	ER membrane protein complex subunit 10 OS=Cucumis melo OX=3656 GN=LOC103487208 P...	[more]
A0A6J1JBS8	3.2e-36	94.32	ER membrane protein complex subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC1114853...	[more]
A0A6J1HB50	3.2e-36	94.32	ER membrane protein complex subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1DA53	5.5e-36	81.55	ER membrane protein complex subunit 10 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of HG10007680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65270.2	4.9e-21	69.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G65270.3	4.9e-21	69.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G65270.1	4.9e-21	69.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..96
None	No IPR available	PANTHER	PTHR21397:SF5	BNAC04G29940D PROTEIN	coord: 10..96
None	No IPR available	PANTHER	PTHR21397	CHROMATIN COMPLEXES SUBUNIT BAP18-RELATED	coord: 10..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007680.1	HG10007680.1	mRNA