HG10007637 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007637
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase
LocationChr10: 8897092 .. 8897367 (+)
RNA-Seq ExpressionHG10007637
SyntenyHG10007637
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAGAGAGTGCTTTGGGATTATGAAGTGACCTTGGGGCAAACAATTAACGTAGACAAATCAACTTTCATGGTTAGCAAGAATGTTTGCCCTTCGAAAGCAAAGATGATTAGTGATGTGTTAGGCATCAAGATCTCTTATAACTTGGGTATGCCTTCTCAATCAGGGAGGAACAAACACAAGATGTTTAAGAAGATTAGAGAAAGGGTTAGCAAGGTGTTGCAACGTTGGAAAGAGAACTTTTTTCAGCTGGGGAAAAAGAGATTCTTATAA

mRNA sequence

ATGGTCAAGAGAGTGCTTTGGGATTATGAAGTGACCTTGGGGCAAACAATTAACGTAGACAAATCAACTTTCATGGTTAGCAAGAATGTTTGCCCTTCGAAAGCAAAGATGATTAGTGATGTGTTAGGCATCAAGATCTCTTATAACTTGGGTATGCCTTCTCAATCAGGGAGGAACAAACACAAGATGTTTAAGAAGATTAGAGAAAGGGTTAGCAAGGTGTTGCAACGTTGGAAAGAGAACTTTTTTCAGCTGGGGAAAAAGAGATTCTTATAA

Coding sequence (CDS)

ATGGTCAAGAGAGTGCTTTGGGATTATGAAGTGACCTTGGGGCAAACAATTAACGTAGACAAATCAACTTTCATGGTTAGCAAGAATGTTTGCCCTTCGAAAGCAAAGATGATTAGTGATGTGTTAGGCATCAAGATCTCTTATAACTTGGGTATGCCTTCTCAATCAGGGAGGAACAAACACAAGATGTTTAAGAAGATTAGAGAAAGGGTTAGCAAGGTGTTGCAACGTTGGAAAGAGAACTTTTTTCAGCTGGGGAAAAAGAGATTCTTATAA

Protein sequence

MVKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGIKISYNLGMPSQSGRNKHKMFKKIRERVSKVLQRWKENFFQLGKKRFL
Homology
BLAST of HG10007637 vs. NCBI nr
Match: XP_030487425.1 (uncharacterized protein LOC115704355 [Cannabis sativa])

HSP 1 Score: 67.8 bits (164), Expect = 5.6e-08
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 2   VKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGIKISYN----LGMPSQSG 61
           +K VL  YE+  GQ IN DKS   V   +    A +++  LG+ +  N    LGMPS  G
Sbjct: 114 IKEVLNRYELLSGQCINYDKSKMCVGSKISSDSAGILAAHLGVSLVENHTKYLGMPSFVG 173

Query: 62  RNKHKMFKKIRERVSKVLQRWKENFF-QLGKKRF 91
           RNKH++F KIRE+V   LQ WK   F Q GK  F
Sbjct: 174 RNKHQVFGKIREKVEAKLQGWKMGLFSQAGKGSF 207

BLAST of HG10007637 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 2   VKRVLWDYE-VTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGI----KISYNLGMPSQS 61
           +K +L  YE  + GQ IN+DKS F+VSKN       +I   L +     +   LG+PSQ+
Sbjct: 519 IKGILESYEKASSGQCINLDKSMFIVSKNTKEQMVGVIRQELMVNHTESLGQYLGLPSQT 578

Query: 62  GRNKHKMFKKIRERVSKVLQRWKENFFQLGKKRFL 92
           GRNK ++F  I++RV K LQ WK   F +G +  L
Sbjct: 579 GRNKRQVFNNIKDRVWKALQGWKGKLFSMGGREVL 613

BLAST of HG10007637 vs. NCBI nr
Match: XP_024199277.1 (uncharacterized protein LOC112202498 [Rosa chinensis])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 2   VKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGI----KISYNLGMPSQSG 61
           ++ VL DYE+ LGQ +N  KS+ + SK VCPS  ++I+  LG+    K    LG+P+  G
Sbjct: 538 IQDVLLDYELALGQKVNFSKSSIVFSKKVCPSLQQLIAGSLGVVIVDKHDKYLGLPTYLG 597

Query: 62  RNKHKMFKKIRERVSKVLQRWKENFFQLGKKRFL 92
           RNK + F  I+ER++K L+ W+        K  L
Sbjct: 598 RNKTESFAYIQERLNKKLEGWQGKLLSSAGKDLL 631

BLAST of HG10007637 vs. NCBI nr
Match: KAA3477739.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 63.9 bits (154), Expect = 8.1e-07
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 2   VKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGIKISYN----LGMPSQSG 61
           +K ++ +YE+  GQ +N DKS    SKNV       +  +LG+++S N    LG+P+  G
Sbjct: 641 MKAIIKEYELVSGQLVNFDKSLIYFSKNVGSDIQDQVGGILGVRVSKNLEKYLGLPTMIG 700

Query: 62  RNKHKMFKKIRERVSKVLQRWKENFFQLGKK 89
           R K + F  I+ER  K LQ W   F   G K
Sbjct: 701 RRKKQAFVDIKERFLKALQNWSLQFLSAGGK 731

BLAST of HG10007637 vs. NCBI nr
Match: EEC66671.1 (hypothetical protein OsI_32959 [Oryza sativa Indica Group])

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 2   VKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGIK-ISYN---LGMPSQSG 61
           +K+++ DYE + GQ +N DKS  M S N+   + K+ S  LGI  I++N   LG+P   G
Sbjct: 220 MKQIILDYERSSGQIVNRDKSVVMFSSNMDEEEKKVFSHTLGINCIAHNDRYLGLPVFIG 279

Query: 62  RNKHKMFKKIRERVSKVLQRWKENFFQLGKKRFL 92
           R+K K F+ ++E++ + +Q WKE F     K  L
Sbjct: 280 RSKAKTFEYLKEKIWRCIQGWKEKFLSKAGKEIL 313

BLAST of HG10007637 vs. ExPASy TrEMBL
Match: A0A6J1DUG8 (uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024135 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.0e-08
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 2   VKRVLWDYE-VTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGI----KISYNLGMPSQS 61
           +K +L  YE  + GQ IN+DKS F+VSKN       +I   L +     +   LG+PSQ+
Sbjct: 519 IKGILESYEKASSGQCINLDKSMFIVSKNTKEQMVGVIRQELMVNHTESLGQYLGLPSQT 578

Query: 62  GRNKHKMFKKIRERVSKVLQRWKENFFQLGKKRFL 92
           GRNK ++F  I++RV K LQ WK   F +G +  L
Sbjct: 579 GRNKRQVFNNIKDRVWKALQGWKGKLFSMGGREVL 613

BLAST of HG10007637 vs. ExPASy TrEMBL
Match: A0A2N9GDN7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25361 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 0

Query: 1   MVKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGIKISYN----LGMPSQS 60
           +VK +LW YE   GQ +N +K     S N  P  A  I D+ G   +++    LG+PS  
Sbjct: 600 VVKEILWVYETASGQKLNCEKMALFFSANTSPDTAGAIRDLWGASNTHSIEKYLGLPSFI 659

Query: 61  GRNKHKMFKKIRERVSKVLQRWKENFF-QLGKK 89
           GR+K K F+ I  RV K LQ WKE F  Q+GK+
Sbjct: 660 GRSKIKAFEDITTRVWKRLQGWKEKFLSQIGKE 692

BLAST of HG10007637 vs. ExPASy TrEMBL
Match: A0A5B6W7C2 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_011604 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 2   VKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGIKISYN----LGMPSQSG 61
           +K ++ +YE+  GQ +N DKS    SKNV       +  +LG+++S N    LG+P+  G
Sbjct: 641 MKAIIKEYELVSGQLVNFDKSLIYFSKNVGSDIQDQVGGILGVRVSKNLEKYLGLPTMIG 700

Query: 62  RNKHKMFKKIRERVSKVLQRWKENFFQLGKK 89
           R K + F  I+ER  K LQ W   F   G K
Sbjct: 701 RRKKQAFVDIKERFLKALQNWSLQFLSAGGK 731

BLAST of HG10007637 vs. ExPASy TrEMBL
Match: B8BG19 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_32959 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-07
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 2   VKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGIK-ISYN---LGMPSQSG 61
           +K+++ DYE + GQ +N DKS  M S N+   + K+ S  LGI  I++N   LG+P   G
Sbjct: 220 MKQIILDYERSSGQIVNRDKSVVMFSSNMDEEEKKVFSHTLGINCIAHNDRYLGLPVFIG 279

Query: 62  RNKHKMFKKIRERVSKVLQRWKENFFQLGKKRFL 92
           R+K K F+ ++E++ + +Q WKE F     K  L
Sbjct: 280 RSKAKTFEYLKEKIWRCIQGWKEKFLSKAGKEIL 313

BLAST of HG10007637 vs. ExPASy TrEMBL
Match: B9G7V6 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_30951 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 2   VKRVLWDYEVTLGQTINVDKSTFMVSKNVCPSKAKMISDVLGIK-ISYN---LGMPSQSG 61
           +K+++ DYE   GQ +N DKS  M S N+   + K+ S  LGI  I++N   LG+P   G
Sbjct: 220 MKQIILDYERCSGQIVNRDKSVVMFSSNMDEEEKKVFSHTLGINCIAHNDRYLGLPVFIG 279

Query: 62  RNKHKMFKKIRERVSKVLQRWKENFFQLGKKRFL 92
           R+K K F+ ++E++ + +Q WKE F     K  L
Sbjct: 280 RSKAKTFEYLKEKIWRCIQGWKEKFLSKAGKEIL 313

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030487425.15.6e-0844.68uncharacterized protein LOC115704355 [Cannabis sativa][more]
XP_022157437.11.2e-0741.05uncharacterized protein LOC111024135 [Momordica charantia][more]
XP_024199277.12.1e-0739.36uncharacterized protein LOC112202498 [Rosa chinensis][more]
KAA3477739.18.1e-0737.36reverse transcriptase [Gossypium australe][more]
EEC66671.11.4e-0638.30hypothetical protein OsI_32959 [Oryza sativa Indica Group][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DUG86.0e-0841.05uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9GDN71.8e-0741.94Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25361 PE=4 SV=1[more]
A0A5B6W7C23.9e-0737.36Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_011604 PE=4 SV=1[more]
B8BG196.7e-0738.30Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_32959 PE=4... [more]
B9G7V61.1e-0638.30Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_30951 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 2..87
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 2..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007637.1HG10007637.1mRNA