HG10007602 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007602
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPhotosystem I assembly protein Ycf4
LocationChr10: 7937522 .. 7937881 (+)
RNA-Seq ExpressionHG10007602
SyntenyHG10007602
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCTATGGGATTGCCGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGAAATAGTGTCTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATAAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGA

mRNA sequence

ATGTCTTTCTATGGGATTGCCGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGAAATAGTGTCTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATAAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGA

Coding sequence (CDS)

ATGTCTTTCTATGGGATTGCCGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGAAATAGTGTCTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATAAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGA

Protein sequence

MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Homology
[Close]
BLAST of HG10007602 vs. NCBI nr
Match: ASY96369.1 (photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis])

HSP 1 Score: 243.8 bits (621), Expect = 7.4e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. NCBI nr
Match: AHM91182.1 (photosystem I assembly protein ycf4, partial [Lagenaria siceraria])

HSP 1 Score: 243.8 bits (621), Expect = 7.4e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 63  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 122

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 123 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 181

[Close]
BLAST of HG10007602 vs. NCBI nr
Match: YP_004841794.1 (photosystem I assembly protein ycf4 [Cucumis melo subsp. melo] >YP_009860084.1 photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis] >ASY96629.1 photosystem I assembly protein Ycf4 [Cucumis melo var. conomon] >ASY96717.1 photosystem I assembly protein Ycf4 [Cucumis melo var. makuwa] >ASY96804.1 photosystem I assembly protein Ycf4 [Cucumis melo var. momordica] >ASY96891.1 photosystem I assembly protein Ycf4 [Cucumis melo var. dudaim] >ASY96978.1 photosystem I assembly protein Ycf4 [Cucumis melo var. cantalupo] >ASY97152.1 photosystem I assembly protein Ycf4 [Cucumis melo var. inodorus] >ASY97326.1 photosystem I assembly protein Ycf4 [Cucumis melo var. flexuosus] >QJF46394.1 photosystem I assembly protein Ycf4 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 7.4e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. NCBI nr
Match: YP_009317397.1 (photosystem I assembly protein Ycf4 [Coccinia grandis] >YP_009326000.1 photosystem I assembly protein Ycf4 [Citrullus lanatus] >YP_009348042.1 photosystem I assembly protein Ycf4 [Citrullus mucosospermus] >YP_009420805.1 photosystem I assembly protein Ycf4 [Citrullus colocynthis] >YP_009431568.1 photosystem I assembly protein Ycf4 [Citrullus amarus] >YP_009431653.1 photosystem I assembly protein Ycf4 [Citrullus rehmii] >YP_009456157.1 photosystem I assembly protein Ycf4 [Lagenaria siceraria] >YP_010131105.1 photosystem I assembly protein Ycf4 [Benincasa hispida] >APW82472.1 photosystem I assembly protein Ycf4 [Citrullus lanatus subsp. vulgaris] >QNM38542.1 hypothetical protein [Lagenaria siceraria var. microcarpa] >QZL38604.1 photosystem I assembly factor Ycf4 [Citrullus naudinianus] >QZL38692.1 photosystem I assembly factor Ycf4 [Citrullus ecirrhosus] >AHM88707.1 photosystem I assembly protein ycf4 [Lagenaria siceraria])

HSP 1 Score: 243.8 bits (621), Expect = 7.4e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. NCBI nr
Match: YP_009004055.1 (photosystem I assembly protein ycf4 [Cucumis hystrix] >YP_009346495.1 photosystem I assembly protein ycf4 [Cucumis x hytivus] >Q2QD78.1 RecName: Full=Photosystem I assembly protein Ycf4 [Cucumis sativus] >ALF03312.1 photosystem I assembly protein Ycf4 [Cucumis sativus var. hardwickii] >AVE15342.1 Ycf4 [Cucumis sativus var. sativus] >QHB75974.1 photosystem I assembly protein Ycf4 [Cucumis melo subsp. melo] >AAZ94662.1 ycf4 protein [Cucumis sativus] >ABI97428.1 photosystem I assembly protein ycf4 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 7.4e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy Swiss-Prot
Match: Q2QD78 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 9.7e-64
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy Swiss-Prot
Match: A0ZZ46 (Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-61
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy Swiss-Prot
Match: Q2L913 (Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-61
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy Swiss-Prot
Match: Q09G35 (Photosystem I assembly protein Ycf4 OS=Platanus occidentalis OX=4403 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.0e-60
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRF MKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFFMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEG+Y RRVLYMEIRGQGAIPLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGLYPRRVLYMEIRGQGAIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy Swiss-Prot
Match: Q2MIH6 (Photosystem I assembly protein Ycf4 OS=Solanum bulbocastanum OX=147425 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.0e-60
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRFL+KDI
Sbjct: 66  MSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLIKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QS+RIEVKEGIYARRVLYM+IRGQG+IPLTRTD+NLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSVRIEVKEGIYARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy TrEMBL
Match: A0A218KG38 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy TrEMBL
Match: A0A1X9Q1L1 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy TrEMBL
Match: A0A1S4EU22 (Photosystem I assembly protein Ycf4 OS=Cucumis melo OX=3656 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy TrEMBL
Match: A0A249S031 (Photosystem I assembly protein Ycf4 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. ExPASy TrEMBL
Match: A0A1P8LE82 (Photosystem I assembly protein Ycf4 OS=Citrullus mucosospermus OX=519315 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI
Sbjct: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 184

[Close]
BLAST of HG10007602 vs. TAIR 10
Match: ATCG00520.1 (unfolded protein binding )

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-57
Identity = 107/119 (89.92%), Postives = 110/119 (92.44%), Query Frame = 0 

Query: 1   MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDI 60
           MSFYGIAGLFIS YLWCTILWNVGSGYD FDRKE IV IFRWGFPGK+RRIFLRF MKDI
Sbjct: 66  MSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRFFMKDI 125

Query: 61  QSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF 120
           QSIRIEVKEG+ ARRVLYMEIRGQGAIPL RTD+N T REIEQKAAELAYFLRVPIEVF
Sbjct: 126 QSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

The following BLAST results are available for this feature:
BLAST of HG10007602 vs. NCBI nr
Match NameE-valueIdentityDescription
ASY96369.17.4e-61100.00photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis][more]
AHM91182.17.4e-61100.00photosystem I assembly protein ycf4, partial [Lagenaria siceraria][more]
YP_004841794.17.4e-61100.00photosystem I assembly protein ycf4 [Cucumis melo subsp. melo] >YP_009860084.1 p... [more]
YP_009317397.17.4e-61100.00photosystem I assembly protein Ycf4 [Coccinia grandis] >YP_009326000.1 photosyst... [more]
YP_009004055.17.4e-61100.00photosystem I assembly protein ycf4 [Cucumis hystrix] >YP_009346495.1 photosyste... [more]
BLAST of HG10007602 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QD789.7e-64100.00Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1[more]
A0ZZ462.0e-6195.80Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3... [more]
Q2L9132.0e-6195.80Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 S... [more]
Q09G355.0e-6094.12Photosystem I assembly protein Ycf4 OS=Platanus occidentalis OX=4403 GN=ycf4 PE=... [more]
Q2MIH65.0e-6093.28Photosystem I assembly protein Ycf4 OS=Solanum bulbocastanum OX=147425 GN=ycf4 P... [more]
BLAST of HG10007602 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218KG383.6e-61100.00Photosystem I assembly protein Ycf4 OS=Cucumis sativus var. hardwickii OX=319220... [more]
A0A1X9Q1L13.6e-61100.00Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1[more]
A0A1S4EU223.6e-61100.00Photosystem I assembly protein Ycf4 OS=Cucumis melo OX=3656 GN=ycf4 PE=3 SV=1[more]
A0A249S0313.6e-61100.00Photosystem I assembly protein Ycf4 OS=Cucumis melo var. cantalupensis OX=3658 G... [more]
A0A1P8LE823.6e-61100.00Photosystem I assembly protein Ycf4 OS=Citrullus mucosospermus OX=519315 GN=ycf4... [more]
BLAST of HG10007602 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00520.11.8e-5789.92unfolded protein binding [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003359Photosystem I Ycf4, assemblyPFAMPF02392Ycf4coord: 1..117
e-value: 5.5E-53
score: 179.2
NoneNo IPR availablePANTHERPTHR33288FAMILY NOT NAMEDcoord: 1..119
NoneNo IPR availablePANTHERPTHR33288:SF4PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007602.1HG10007602.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid