HG10007576 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007576
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein RALF-like 9
LocationChr10: 7511311 .. 7511565 (+)
RNA-Seq ExpressionHG10007576
SyntenyHG10007576
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGAGGTAACATATGCAACAGATTTCATTGGTTATGACCCTATAGAAGGATATATTAGTCTTGGATGTGGCCCAAAGCATGGTGAACTTCATAAATTAACTCCTGCAAATCCATATCGAAGATGTTGCAATGCAGCTAATCATTGCAAGGGAGGAAATGATATTATAGATTATGTAGAAGAAGTTATTGAAGGGGATGCATCCACTAGCCCAGCAATGAGCCCTAATGTAGAATACCGCCCTCATGAATAA

mRNA sequence

ATGCTTGAGGTAACATATGCAACAGATTTCATTGGTTATGACCCTATAGAAGGATATATTAGTCTTGGATGTGGCCCAAAGCATGGTGAACTTCATAAATTAACTCCTGCAAATCCATATCGAAGATGTTGCAATGCAGCTAATCATTGCAAGGGAGGAAATGATATTATAGATTATGTAGAAGAAGTTATTGAAGGGGATGCATCCACTAGCCCAGCAATGAGCCCTAATGTAGAATACCGCCCTCATGAATAA

Coding sequence (CDS)

ATGCTTGAGGTAACATATGCAACAGATTTCATTGGTTATGACCCTATAGAAGGATATATTAGTCTTGGATGTGGCCCAAAGCATGGTGAACTTCATAAATTAACTCCTGCAAATCCATATCGAAGATGTTGCAATGCAGCTAATCATTGCAAGGGAGGAAATGATATTATAGATTATGTAGAAGAAGTTATTGAAGGGGATGCATCCACTAGCCCAGCAATGAGCCCTAATGTAGAATACCGCCCTCATGAATAA

Protein sequence

MLEVTYATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKGGNDIIDYVEEVIEGDASTSPAMSPNVEYRPHE
Homology
BLAST of HG10007576 vs. NCBI nr
Match: KAE8650705.1 (hypothetical protein Csa_010421 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1   MLEVTYATDFIGYDPI-EGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKGGNDIIDY 60
           M+ +T A  FI Y  I  G +S GC P H EL ++  ANPY+R CN  + C+ GNDIID 
Sbjct: 21  MIMITNAKKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDIIDA 80

Query: 61  VEEVIEGDASTSPAMSPNVE 80
            EE IEGDAS SP++SPN+E
Sbjct: 81  EEEHIEGDASISPSISPNIE 100

BLAST of HG10007576 vs. NCBI nr
Match: XP_022159360.1 (uncharacterized protein LOC111025777 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 8.2e-14
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 1  MLEVTYATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKGGNDIIDYV 60
          M+++T AT FI YDP+ G +S GC P H EL KL  ANPY+R C + + C+GG+DIID  
Sbjct: 21 MIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGCTSIDRCRGGSDIIDDA 80

Query: 61 EEVIEGDA 69
          E ++EGDA
Sbjct: 81 EMIVEGDA 88

BLAST of HG10007576 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 5.5e-10
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 1   MLEVTYATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKG--GNDIID 60
           M+E+T AT +I YDP++    L C P H +L K TPANPY+R CN  + C+G   +DIID
Sbjct: 19  MIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQRGCNPIDRCRGAESDDIID 78

Query: 61  YVEEVI-------------EG-DASTSPAMSPNVE 80
             EE I             EG D ++ PA+SPN E
Sbjct: 79  NDEEDITNNDEEDDIVDNDEGYDNASCPAISPNGE 113

BLAST of HG10007576 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 3.6e-09
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 1   MLEVTYATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKG--GNDIID 60
           M+E+T AT +I YDP++    L C P H +L K  PANPY+R CN  + C+G   +DIID
Sbjct: 14  MIEITNATHYINYDPLKKNRDLVCSPTHPDLCKKIPANPYQRGCNPIDRCRGAESDDIID 73

Query: 61  YVEE-----------VIEGDA----STSPAMSPNVEY 81
             EE           +I+ D     ++ PA+SPN E+
Sbjct: 74  NDEEDDITNNDEEDDIIDNDEGYDDASCPAISPNGEF 110

BLAST of HG10007576 vs. NCBI nr
Match: PNX70961.1 (hypothetical protein L195_g057917 [Trifolium pratense])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 34/72 (47.22%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 7  ATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKGGNDIIDYVEEVIEG 66
          A  FIGY  I   IS GC PKH EL K  PANPYRR C A   C+GG       EE +E 
Sbjct: 25 AKKFIGYGAIGRDISPGCSPKHPELCKFHPANPYRRGCEAEMRCRGGPSAEKEEEEEVEE 84

Query: 67 DASTSPAMSPNV 79
          D   S  + P++
Sbjct: 85 DPDHSHILIPDL 96

BLAST of HG10007576 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1   MLEVTYATDFIGYDPI-EGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKGGNDIIDY 60
           M+ +T A  FI Y  I  G +S GC P H EL ++  ANPY+R CN  + C+ GNDIID 
Sbjct: 21  MIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDIIDA 80

Query: 61  VEEVIEGDASTSPAMSPNVE 80
            EE IEGDAS SP++SPN+E
Sbjct: 81  EEEHIEGDASISPSISPNIE 100

BLAST of HG10007576 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.0e-14
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 1  MLEVTYATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKGGNDIIDYV 60
          M+++T AT FI YDP+ G +S GC P H EL KL  ANPY+R C + + C+GG+DIID  
Sbjct: 21 MIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGCTSIDRCRGGSDIIDDA 80

Query: 61 EEVIEGDA 69
          E ++EGDA
Sbjct: 81 EMIVEGDA 88

BLAST of HG10007576 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-10
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 1   MLEVTYATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKG--GNDIID 60
           M+E+T AT +I YDP++    L C P H +L K TPANPY+R CN  + C+G   +DIID
Sbjct: 19  MIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQRGCNPIDRCRGAESDDIID 78

Query: 61  YVEEVI-------------EG-DASTSPAMSPNVE 80
             EE I             EG D ++ PA+SPN E
Sbjct: 79  NDEEDITNNDEEDDIVDNDEGYDNASCPAISPNGE 113

BLAST of HG10007576 vs. ExPASy TrEMBL
Match: A0A2K3KXF8 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g057917 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-08
Identity = 34/72 (47.22%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 7  ATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKGGNDIIDYVEEVIEG 66
          A  FIGY  I   IS GC PKH EL K  PANPYRR C A   C+GG       EE +E 
Sbjct: 25 AKKFIGYGAIGRDISPGCSPKHPELCKFHPANPYRRGCEAEMRCRGGPSAEKEEEEEVEE 84

Query: 67 DASTSPAMSPNV 79
          D   S  + P++
Sbjct: 85 DPDHSHILIPDL 96

BLAST of HG10007576 vs. ExPASy TrEMBL
Match: A0A6J1C8U5 (uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008495 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 1  MLEVTYATDFIGYDPIEGYISLGCGPKHGELHKLTPANPYRRCCNAANHCKGGNDIIDYV 60
          M+E+T A  +I Y  ++  +S GC PKH  L KL  AN Y+R C+A N C+  +D ID  
Sbjct: 21 MIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGCSAINRCR-RDDYID-S 80

Query: 61 EEVIEGDA 69
          EE I+GDA
Sbjct: 81 EEKIKGDA 86

BLAST of HG10007576 vs. TAIR 10
Match: AT4G11653.1 (RALF-like 29 )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 21/52 (40.38%), Postives = 28/52 (53.85%), Query Frame = 0

Query: 2  LEVTYATDFIGYDPIEGYISLGCGPKH--GELHKLTPANPYRRCCNAANHCK 52
          +   +A  +I Y PI   +  GC P+      +K TPANPYRR C  AN C+
Sbjct: 20 ISTIHAKRYIEY-PIRLDLGKGCDPRFPTAACYKRTPANPYRRPCTTANRCR 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650705.12.8e-1453.75hypothetical protein Csa_010421 [Cucumis sativus][more]
XP_022159360.18.2e-1454.41uncharacterized protein LOC111025777 [Momordica charantia][more]
XP_022961577.15.5e-1044.21protein RALF-like 9 [Cucurbita moschata][more]
XP_023546462.13.6e-0940.21protein RALF-like 9 [Cucurbita pepo subsp. pepo][more]
PNX70961.11.1e-0747.22hypothetical protein L195_g057917 [Trifolium pratense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8B11.4e-1453.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1[more]
A0A6J1DYH74.0e-1454.41uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1HAJ82.7e-1044.21protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1[more]
A0A2K3KXF85.6e-0847.22Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g057917 PE=3 SV=1[more]
A0A6J1C8U53.0e-0647.06uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
Match NameE-valueIdentityDescription
AT4G11653.11.7e-0440.38RALF-like 29 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34270:SF10SUBFAMILY NOT NAMEDcoord: 1..71
NoneNo IPR availablePANTHERPTHR34270PROTEIN RALF-LIKE 15-RELATEDcoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007576.1HG10007576.1mRNA