HG10007523 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007523
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr10: 6442693 .. 6443121 (+)
RNA-Seq ExpressionHG10007523
SyntenyHG10007523
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAAACACAAAGCCTGAATAATGAACAAAGTAGGTTCCCTGACAAACCCTTCACAACAGGTGAGATTTGGTTAGCGGTTAAGGCTGTGGGCACCACCAAAACCTCGGGGCGAGATGGTTACATTGCGGAATTCTTTAATAAGTCATGGAACATCCTAAAGGATGACCTAGTTAGAGTGTTCCAAGAATTTTTTGGCAATGTCGATGAAACATACACTTGCCTCATCCCAAAAAAGATTGATGTTGCACTTGGTTGTACAAAATCATTGCACGGGTTCTCTCAAACCGACTTAAGAAAGTTTTACCAACCACCATTTTGGAATACCAATCTGCTCTTTTGGAAGGAAGACAAAATTCGGATGCTTCCCTTATTGCCAACAAAATCATTGAAGATTGACATAGAAAGAAGACTCAAGGAGTGGTAG

mRNA sequence

ATGCCCAAAACACAAAGCCTGAATAATGAACAAAGTAGGTTCCCTGACAAACCCTTCACAACAGGTGAGATTTGGTTAGCGGTTAAGGCTGTGGGCACCACCAAAACCTCGGGGCGAGATGGTTACATTGCGGAATTCTTTAATAAGTCATGGAACATCCTAAAGGATGACCTAGTTAGAGTGTTCCAAGAATTTTTTGGCAATGTCGATGAAACATACACTTGCCTCATCCCAAAAAAGATTGATGTTGCACTTGGTTGTACAAAATCATTGCACGGGTTCTCTCAAACCGACTTAAGAAAGTTTTACCAACCACCATTTTGGAATACCAATCTGCTCTTTTGGAAGGAAGACAAAATTCGGATGCTTCCCTTATTGCCAACAAAATCATTGAAGATTGACATAGAAAGAAGACTCAAGGAGTGGTAG

Coding sequence (CDS)

ATGCCCAAAACACAAAGCCTGAATAATGAACAAAGTAGGTTCCCTGACAAACCCTTCACAACAGGTGAGATTTGGTTAGCGGTTAAGGCTGTGGGCACCACCAAAACCTCGGGGCGAGATGGTTACATTGCGGAATTCTTTAATAAGTCATGGAACATCCTAAAGGATGACCTAGTTAGAGTGTTCCAAGAATTTTTTGGCAATGTCGATGAAACATACACTTGCCTCATCCCAAAAAAGATTGATGTTGCACTTGGTTGTACAAAATCATTGCACGGGTTCTCTCAAACCGACTTAAGAAAGTTTTACCAACCACCATTTTGGAATACCAATCTGCTCTTTTGGAAGGAAGACAAAATTCGGATGCTTCCCTTATTGCCAACAAAATCATTGAAGATTGACATAGAAAGAAGACTCAAGGAGTGGTAG

Protein sequence

MPKTQSLNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFFGNVDETYTCLIPKKIDVALGCTKSLHGFSQTDLRKFYQPPFWNTNLLFWKEDKIRMLPLLPTKSLKIDIERRLKEW
Homology
BLAST of HG10007523 vs. NCBI nr
Match: XP_023518084.1 (uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 0

Query: 7   LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF 66
           ++ +Q+   +  FT  E+  A++ +G+ KT G DG+ +EFF K WN ++ D++RVF +FF
Sbjct: 57  IDQQQAASLEVAFTEEEVVKAIQNLGSDKTLGPDGFTSEFFQKCWNFMRVDIMRVFHDFF 116

Query: 67  ------GNVDETYTCLIPKKID 83
                 GN++ETY  LI KK+D
Sbjct: 117 RNGVINGNLNETYIYLISKKLD 138

BLAST of HG10007523 vs. NCBI nr
Match: KAA0056004.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 7.4e-07
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0

Query: 7   LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF 66
           ++N  S   DKPF   EIWL +K+    K  G DG+  +F  KSW+ +K ++  +F++F 
Sbjct: 104 ISNTNSGLLDKPFNEAEIWLTLKSFAKNKAPGPDGFTMDFLQKSWSFMKQNICDIFKDFH 163

Query: 67  GN------VDETYTCLIPKK 81
            N      V+ET   LI KK
Sbjct: 164 SNHTINKVVNETLITLIAKK 183

BLAST of HG10007523 vs. NCBI nr
Match: XP_009335445.1 (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 64.7 bits (156), Expect = 7.4e-07
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 6   SLNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEF 65
           S++  ++ + ++PF   E+  AV   G  K+ G DGY  + F   W  LK D+V+V +EF
Sbjct: 243 SISESEAAWVERPFEESEVQRAVFDCGRVKSPGPDGYSLQMFQHFWEFLKVDIVKVMEEF 302

Query: 66  FGN------VDETYTCLIPKKID 83
           F         +ET+ CLIPKK D
Sbjct: 303 FETGIINAVTNETFICLIPKKSD 325

BLAST of HG10007523 vs. NCBI nr
Match: TYK29577.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 7   LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF 66
           ++N  S   DKPF   EIWL +K+    K  G DGY  +F  KSW+ +K ++  +F++F 
Sbjct: 556 ISNTNSDLLDKPFNEAEIWLTLKSFAKNKAPGPDGYTMDFLQKSWSFMKQNICDIFKDFH 615

Query: 67  GN------VDETYTCLIPKK 81
                   V+ET   LI KK
Sbjct: 616 STHTINKVVNETLITLIAKK 635

BLAST of HG10007523 vs. NCBI nr
Match: XP_021852665.1 (uncharacterized protein LOC110792162 [Spinacia oleracea])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1    MPKTQSLNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVR 60
            M K + L+ + ++    P TT EI LA+K +   K  G DG+ ++FF  +W+ILKDD+ R
Sbjct: 1579 MRKGKQLSADSAQALVLPVTTLEIDLALKGIDINKAPGLDGFNSQFFISTWDILKDDIYR 1638

Query: 61   VFQEFFG------NVDETYTCLIPKKIDVAL 86
            V QEFF        V+ T   LIPK  +V +
Sbjct: 1639 VVQEFFATGRMLKQVNNTAVTLIPKVHNVLI 1669

BLAST of HG10007523 vs. ExPASy TrEMBL
Match: A0A5A7ULE1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001490 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-07
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0

Query: 7   LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF 66
           ++N  S   DKPF   EIWL +K+    K  G DG+  +F  KSW+ +K ++  +F++F 
Sbjct: 104 ISNTNSGLLDKPFNEAEIWLTLKSFAKNKAPGPDGFTMDFLQKSWSFMKQNICDIFKDFH 163

Query: 67  GN------VDETYTCLIPKK 81
            N      V+ET   LI KK
Sbjct: 164 SNHTINKVVNETLITLIAKK 183

BLAST of HG10007523 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.1e-07
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 7   LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF 66
           ++N  S   DKPF   EIWL +K+    K  G DGY  +F  KSW+ +K ++  +F++F 
Sbjct: 352 ISNINSELLDKPFNEAEIWLTLKSFAKNKAPGPDGYAMDFLQKSWSFMKQNICDIFKDFH 411

Query: 67  GN------VDETYTCLIPKK 81
                   V+ET   LI KK
Sbjct: 412 STHIINKVVNETLITLIAKK 431

BLAST of HG10007523 vs. ExPASy TrEMBL
Match: A0A5D3E0F6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001830 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.1e-07
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 7   LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF 66
           ++N  S   DKPF   EIWL +K+    K  G DGY  +F  KSW+ +K ++  +F++F 
Sbjct: 556 ISNTNSDLLDKPFNEAEIWLTLKSFAKNKAPGPDGYTMDFLQKSWSFMKQNICDIFKDFH 615

Query: 67  GN------VDETYTCLIPKK 81
                   V+ET   LI KK
Sbjct: 616 STHTINKVVNETLITLIAKK 635

BLAST of HG10007523 vs. ExPASy TrEMBL
Match: A0A6A2WMD5 (Reverse transcriptase domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116951pilonHSYRG00119 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.9e-07
Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 7   LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF 66
           +N    +F + PF+  E+W+AVK++  T+  G D +  +FF K W  +K +++R  +EF+
Sbjct: 194 INLASKKFIESPFSEEEVWVAVKSLDGTRAPGPDDFSLDFFKKFWKYIKGEVMRFVEEFY 253

Query: 67  -GNVDE-----TYTCLIPKKID 83
            G V++     +Y  LIPKK++
Sbjct: 254 WGKVEDISFKKSYIALIPKKLE 275

BLAST of HG10007523 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 7   LNNEQSRFPDKPFTTGEIWLAVKAVGTTKTSGRDGYIAEFFNKSWNILKDDLVRVFQEFF 66
           ++N  S   DKPF   EIWL +K+    K  G DG+  +F  KSW+ +K ++  +F++F 
Sbjct: 352 ISNTNSGLLDKPFNEAEIWLTLKSFAKNKAPGPDGFTMDFLQKSWSFMKQNICDIFKDFH 411

Query: 67  GN------VDETYTCLIPKK 81
            N      V+ET    I KK
Sbjct: 412 SNHTINKVVNETLITFIAKK 431

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023518084.16.0e-0940.24uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo][more]
KAA0056004.17.4e-0737.50LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
XP_009335445.17.4e-0737.35PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri][more]
TYK29577.11.3e-0637.50LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
XP_021852665.11.3e-0639.56uncharacterized protein LOC110792162 [Spinacia oleracea][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7ULE13.6e-0737.50LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I76.1e-0737.50LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3E0F66.1e-0737.50LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A6A2WMD57.9e-0734.15Reverse transcriptase domain-containing protein OS=Hibiscus syriacus OX=106335 G... [more]
A0A5D3BJP31.0e-0636.25LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007523.1HG10007523.1mRNA