HG10007520 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007520
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nuclear cap-binding protein subunit 1
Location	Chr10: 6408826 .. 6411328 (+)
RNA-Seq Expression	HG10007520
Synteny	HG10007520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCTCATCCGACTACAAAGATCACATTGTTCGTCTCTTTCTCTCTCACTCCTTCCGTCTACACTCCATTATTCGACTACTTGTCGTTGATTTCTATCTGGGACTTGCAGGAAACTTGCTTTGCTGCGATTCGGCGGGAGCTGGATCACTATGGAGATGAAATTTTGCTGGTAATCATTTGCCTCTGCAGATTTTTAATTTATCTGGGTGTTGATTAAATTTTGAGTTATTGTGTTGATTCAAGTTATATTGGTTGAATCACTATATTAGTAGTATGCGTGAGTTGTGTCTAACTACTCTATTCTTATGGTATTTACACTGTTTTTTTTTCATCGTATGACAGTTCCTTCTGCAATGTGTTGAACAATTGCCTCATAAGACTCCTTTGTACGGGACATTGGTAAACTACATTACACCCTTTAGACCTCCAGTGGATATCTTTTATTTTCATTTATGTATTGCGTTGATCAGATTATATTGCTAGGTCGTGTGATCTAGCTTTAACTTCTCAATTATTTGTTATATGTATGGTATAGTTGTAAGGCTTATTTGACGAAATTTCTAAATGGTTCCCATAAAAAGACCAGAATTGAGATTCAAATACAGTGCAAACGCCTTTCCTTGTGCTATTGCCTTTTAGGTTCTTCTTTGTATATCGTTTGTGCTGCGGTAGGAGAATGTCTTTAGAGCTACTTAGGCCGGACACTTCCTTTTCTTCATTTATTTCAATTTTTTGATTTAACAAAATGGTATGTTTCGTATAGAAAAAGATAACCTCATCAAAATTGTATTTTCTCAATACTTGGAGCCTTTTTTTTTCCCCCTTTCCTAGTTTGGTTTGTTGCGTTGGATCTCTTTGATCTGGCCCCTTTTTTAATTCTCTTTCTTTATTCTTTCATTTTCTCTATGAAACCATGTTTTATTTTTCTTAAAAAAAAAGAATTAGTTTTGCTCCTTTTGTCGGGCTATCCTTTTGTATGTTTCTTGATTCTTTTATATTTCATTTGTATCTTCTTTCATTCATTATGAAATTGTGGATTTTTATCTTAAAAATTGTAAGAATTAGTTTGACTCCGTTTGTGGGGCTATCTTTTTGTATGCCCTTGTTTCCTTTATAATCTCATTCCAATTGGTAAATGGTCTTTTTTGTTTAATATTTAGCAGACTTAACAATACTTTAAATTATTTCATGGCAGTACACTTATAATTCACAATGATGGTTTAGTTTGCTTTAGTGACATATGTCTATCTTGTTGTATACAGATTGGATTAATTAATCTGGAAAATGAAGACTTCGTGAAGAAAATTGTGGAGCAAACTCACACAAGTTTTCAGGTTAGTGATTATGCAAATCATCTCGTTTAGGCATTTTCATTTCTTATGCCTTCTGGACTTCTTGCCTTGCTCAATCCCTTCCTTTCAAACTCCTCCGAGAATTCGATCCTATTGTCTCCCGGCAACTAGTCTCTTGATTGCTTCAAGGTAAGAGGCGACAAAGAGACATTATTGTAATCTTAGTGAAGTAAGACGCGTTTTTATTCTCTAATTTTTATGCCCCTAGTTTGTCCCTAGACCCTTCTTGGAAGGTTTAGACTGGCCCCATTTTGGAGAACCCTTCCCAGTCCTATTTTGAGTTCTCTAGGAGCTTTTGTCATTGGAAGACAAATTTTAGACCAAGTGTTGATTGATAATGAAGCCATTAAGGATTATAGGCAAAGAAGGGGGAAAAAATGATCTTTACAATTAATAGGTTCTTGAGCCTTCAATTTTGTGTCTAACAGGTTTTTGGACTTTCAAATTTGTGTCTAAATCCTTATCCTATCCAACACTTTTTAAAGTTGATGGATCTATGAAACACAAAATCGAAATGTTAAGGTCAAGTGTCTAATAGTTTTGTCTTTAAAAAAAATATTAAATAGGTTATAGGTCAAAGACCCATTAGACACAATTGAAAAGTTTTGGGATCTATTGAACATTTTTAGAAGTTTTCTTATCTTTTTTCTTTTTTCTTTTTTTTTTTCCTTGGATAAGAAACTATTTAAATTTCAATTATTTCATCAGAGATATTTTGTTGATCTTTCTCCTAGTTCTTTTTCAGGATGCCTTAAACTCTGGACATTGCCACAAGATCCGGATTTTGTTACGGTTTCTAACCGCATTGGTATGCTTGATTTTGCTATTAACAATTTATGACTGAGATTATTATTTTTCAAAATTAGAAAGCCTTACATCTTAGAGTTTTGTTATTGTTATCTCTAGAAAATATTCTGACCTTCTAAGCATTTTTGTTGTCTTAAGTAGATGAGCAGTAAAGTCCTGCTGTCCACATCTCTAGTTGTTGTTTTTGAAACATTACTATCTTCAGCTGCCACAACGGTGGATGATGAGAAGGGAAACCCTGCATGGCAGGCACGTGCTGACTTTTACATAACTTGCATTCTTTCTTGTTTTCCCTGGGGAGGCGCCGAACTGGTTGAGGTATTGTTGTTTCATATCTGA

mRNA sequence

ATGGCACCTCATCCGACTACAAAGATCACATTGTTCGTCTCTTTCTCTCTCACTCCTTCCGTCTACACTCCATTATTCGACTACTTGTCGTTGATTTCTATCTGGGACTTGCAGGAAACTTGCTTTGCTGCGATTCGGCGGGAGCTGGATCACTATGGAGATGAAATTTTGCTGATTGGATTAATTAATCTGGAAAATGAAGACTTCGTGAAGAAAATTGTGGAGCAAACTCACACAAGTTTTCAGATGAGCAGTAAAGTCCTGCTGTCCACATCTCTAGTTGTTGTTTTTGAAACATTACTATCTTCAGCTGCCACAACGGTGGATGATGAGAAGGGAAACCCTGCATGGCAGGCACGTGCTGACTTTTACATAACTTGCATTCTTTCTTGTTTTCCCTGGGGAGGCGCCGAACTGGTTGAGGTATTGTTGTTTCATATCTGA

Coding sequence (CDS)

ATGGCACCTCATCCGACTACAAAGATCACATTGTTCGTCTCTTTCTCTCTCACTCCTTCCGTCTACACTCCATTATTCGACTACTTGTCGTTGATTTCTATCTGGGACTTGCAGGAAACTTGCTTTGCTGCGATTCGGCGGGAGCTGGATCACTATGGAGATGAAATTTTGCTGATTGGATTAATTAATCTGGAAAATGAAGACTTCGTGAAGAAAATTGTGGAGCAAACTCACACAAGTTTTCAGATGAGCAGTAAAGTCCTGCTGTCCACATCTCTAGTTGTTGTTTTTGAAACATTACTATCTTCAGCTGCCACAACGGTGGATGATGAGAAGGGAAACCCTGCATGGCAGGCACGTGCTGACTTTTACATAACTTGCATTCTTTCTTGTTTTCCCTGGGGAGGCGCCGAACTGGTTGAGGTATTGTTGTTTCATATCTGA

Protein sequence

MAPHPTTKITLFVSFSLTPSVYTPLFDYLSLISIWDLQETCFAAIRRELDHYGDEILLIGLINLENEDFVKKIVEQTHTSFQMSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELVEVLLFHI

Homology

[Close]

BLAST of HG10007520 vs. NCBI nr
Match: KAA0067225.1 (nuclear cap-binding protein subunit 1 [Cucumis melo var. makuwa] >TYK27755.1 nuclear cap-binding protein subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 5.2e-56
Identity = 125/181 (69.06%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 1   MAPHPTTKITLFVSFSLTPSVYTPLFDYLSLISIWDLQETCFAAIRRELDHYGDEIL--- 60
           MAP PT+KITLFV+FS    +Y P+FDYLSLISIW LQETCF AIRRELDHYGDEIL   
Sbjct: 1   MAPPPTSKITLFVTFSHPSPIYAPVFDYLSLISIWVLQETCFGAIRRELDHYGDEILPFL 60

Query: 61  ----------------LIGLINLENEDFVKKIVEQTHTSFQ------------------- 120
                           LIGL+NLENEDFVKK+VE+TH SFQ                   
Sbjct: 61  LQCVEQLPHKTPLYGTLIGLMNLENEDFVKKVVEKTHKSFQDALNSGHCHKIRILLRFLT 120

Query: 121 --MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELV 142
             MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELV
Sbjct: 121 ALMSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELV 180

[Close]

BLAST of HG10007520 vs. NCBI nr
Match: XP_038878426.1 (nuclear cap-binding protein subunit 1 [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 4.3e-42
Identity = 100/143 (69.93%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHT 98
           ETCFAAIRRELDHYGDE+L                   LIGL+NLENEDFVKKIVE+THT
Sbjct: 29  ETCFAAIRRELDHYGDEVLPFLLQCVEQLPHKTPLYGTLIGLLNLENEDFVKKIVEKTHT 88

Query: 99  SFQ---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           SFQ                     MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ
Sbjct: 89  SFQDALNSGHCHKIRILLRFLTALMSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 148

[Close]

BLAST of HG10007520 vs. NCBI nr
Match: XP_022154329.1 (nuclear cap-binding protein subunit 1 [Momordica charantia])

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 99/143 (69.23%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHT 98
           ETCFAAIRRELDHYGDEIL                   LIGL+NLENEDFVKKIVEQTHT
Sbjct: 29  ETCFAAIRRELDHYGDEILPFLLQCVEQLPHKIPLYGTLIGLMNLENEDFVKKIVEQTHT 88

Query: 99  SFQ---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           +FQ                     MSSKVLLSTSLVVVFETLLSSAATTVD+EKGNPAWQ
Sbjct: 89  NFQDALNSGNCHRIRILLRFLTAMMSSKVLLSTSLVVVFETLLSSAATTVDEEKGNPAWQ 148

[Close]

BLAST of HG10007520 vs. NCBI nr
Match: XP_008450385.1 (PREDICTED: nuclear cap-binding protein subunit 1 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 8.1e-41
Identity = 98/143 (68.53%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHT 98
           ETCF AIRRELDHYGDEIL                   LIGL+NLENEDFVKK+VE+TH 
Sbjct: 29  ETCFGAIRRELDHYGDEILPFLLQCVEQLPHKTPLYGTLIGLMNLENEDFVKKVVEKTHK 88

Query: 99  SFQ---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           SFQ                     MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ
Sbjct: 89  SFQDALNSGHCHKIRILLRFLTALMSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 148

[Close]

BLAST of HG10007520 vs. NCBI nr
Match: XP_004139050.1 (nuclear cap-binding protein subunit 1 [Cucumis sativus] >KGN66512.1 hypothetical protein Csa_007431 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-40
Identity = 98/155 (63.23%), Postives = 105/155 (67.74%), Query Frame = 0


Query: 27  DYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENE 86
           +Y +     D  ETCF A+RRELDHYGDE+L                   LIGL+NLENE
Sbjct: 17  EYATSSDFKDHIETCFGAVRRELDHYGDEVLPFLLQCVEQLPHKTPLYGTLIGLMNLENE 76

Query: 87  DFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFETLLSSAAT 142
           DFVKK+VE+TH SFQ                     MSSKVLLSTSLVVVFETLLSSAAT
Sbjct: 77  DFVKKVVEKTHESFQDALNSGDCHKIRVLLRFLTALMSSKVLLSTSLVVVFETLLSSAAT 136

[Close]

BLAST of HG10007520 vs. ExPASy Swiss-Prot
Match: Q9SIU2 (Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana OX=3702 GN=ABH1 PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-30
Identity = 71/143 (49.65%), Postives = 88/143 (61.54%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHT 98
           ETCF  IRRE++  GD++L                   LIGL+NLENEDFV+K+VE  H 
Sbjct: 29  ETCFGVIRREIERSGDQVLPFLLQCAEQLPHKIPLYGTLIGLLNLENEDFVQKLVESVHA 88

Query: 99  SFQMS---------------------SKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           +FQ++                     SKV+   SL+VVFETLLSSAATTVD+EKGNP+WQ
Sbjct: 89  NFQVALDSGNCNSIRILLRFMTSLLCSKVIQPASLIVVFETLLSSAATTVDEEKGNPSWQ 148

[Close]

BLAST of HG10007520 vs. ExPASy Swiss-Prot
Match: Q10LJ0 (Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ABH1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-23
Identity = 62/143 (43.36%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEI-------------------LLIGLINLENEDFVKKIVEQTHT 98
           ETC+  + RE +H  D +                   +LIGLINLENEDF K IV+ TH 
Sbjct: 30  ETCYGVLCREYEHSKDAMFEFLLQCADQLPHKIPFFGVLIGLINLENEDFSKGIVDTTHA 89

Query: 99  SFQ---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           + Q                     M SKV+L  S++  FE LLSSAAT +D+E GNP+WQ
Sbjct: 90  NLQDALHNENRDRIRILLRFLCGLMCSKVVLPNSIIETFEALLSSAATILDEETGNPSWQ 149

[Close]

BLAST of HG10007520 vs. ExPASy TrEMBL
Match: A0A5D3DWR2 (Nuclear cap-binding protein subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G001130 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 125/181 (69.06%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 1   MAPHPTTKITLFVSFSLTPSVYTPLFDYLSLISIWDLQETCFAAIRRELDHYGDEIL--- 60
           MAP PT+KITLFV+FS    +Y P+FDYLSLISIW LQETCF AIRRELDHYGDEIL   
Sbjct: 1   MAPPPTSKITLFVTFSHPSPIYAPVFDYLSLISIWVLQETCFGAIRRELDHYGDEILPFL 60

Query: 61  ----------------LIGLINLENEDFVKKIVEQTHTSFQ------------------- 120
                           LIGL+NLENEDFVKK+VE+TH SFQ                   
Sbjct: 61  LQCVEQLPHKTPLYGTLIGLMNLENEDFVKKVVEKTHKSFQDALNSGHCHKIRILLRFLT 120

Query: 121 --MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELV 142
             MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELV
Sbjct: 121 ALMSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQARADFYITCILSCFPWGGAELV 180

[Close]

BLAST of HG10007520 vs. ExPASy TrEMBL
Match: A0A6J1DLR3 (nuclear cap-binding protein subunit 1 OS=Momordica charantia OX=3673 GN=LOC111021617 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 6.0e-42
Identity = 99/143 (69.23%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHT 98
           ETCFAAIRRELDHYGDEIL                   LIGL+NLENEDFVKKIVEQTHT
Sbjct: 29  ETCFAAIRRELDHYGDEILPFLLQCVEQLPHKIPLYGTLIGLMNLENEDFVKKIVEQTHT 88

Query: 99  SFQ---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           +FQ                     MSSKVLLSTSLVVVFETLLSSAATTVD+EKGNPAWQ
Sbjct: 89  NFQDALNSGNCHRIRILLRFLTAMMSSKVLLSTSLVVVFETLLSSAATTVDEEKGNPAWQ 148

[Close]

BLAST of HG10007520 vs. ExPASy TrEMBL
Match: A0A1S3BQ48 (nuclear cap-binding protein subunit 1 OS=Cucumis melo OX=3656 GN=LOC103492007 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.9e-41
Identity = 98/143 (68.53%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHT 98
           ETCF AIRRELDHYGDEIL                   LIGL+NLENEDFVKK+VE+TH 
Sbjct: 29  ETCFGAIRRELDHYGDEILPFLLQCVEQLPHKTPLYGTLIGLMNLENEDFVKKVVEKTHK 88

Query: 99  SFQ---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           SFQ                     MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ
Sbjct: 89  SFQDALNSGHCHKIRILLRFLTALMSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 148

[Close]

BLAST of HG10007520 vs. ExPASy TrEMBL
Match: A0A0A0M082 (MIF4G domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616300 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.1e-41
Identity = 98/155 (63.23%), Postives = 105/155 (67.74%), Query Frame = 0


Query: 27  DYLSLISIWDLQETCFAAIRRELDHYGDEIL-------------------LIGLINLENE 86
           +Y +     D  ETCF A+RRELDHYGDE+L                   LIGL+NLENE
Sbjct: 17  EYATSSDFKDHIETCFGAVRRELDHYGDEVLPFLLQCVEQLPHKTPLYGTLIGLMNLENE 76

Query: 87  DFVKKIVEQTHTSFQ---------------------MSSKVLLSTSLVVVFETLLSSAAT 142
           DFVKK+VE+TH SFQ                     MSSKVLLSTSLVVVFETLLSSAAT
Sbjct: 77  DFVKKVVEKTHESFQDALNSGDCHKIRVLLRFLTALMSSKVLLSTSLVVVFETLLSSAAT 136

[Close]

BLAST of HG10007520 vs. ExPASy TrEMBL
Match: A0A6J1KQ76 (nuclear cap-binding protein subunit 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497696 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 97/143 (67.83%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHT 98
           ETCF AIRRELDHYGDE+L                   LIGLINLENEDFVKKIV+QTH 
Sbjct: 29  ETCFGAIRRELDHYGDEVLPFLLQCVEQLPHKTPLYGTLIGLINLENEDFVKKIVDQTHK 88

Query: 99  SFQ---------------------MSSKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           SFQ                     MSSKVLLSTSLVVVFETLLSSAATTVD+EKGNPAWQ
Sbjct: 89  SFQDALNTGNCHRIRILLRFLTTLMSSKVLLSTSLVVVFETLLSSAATTVDEEKGNPAWQ 148

[Close]

BLAST of HG10007520 vs. TAIR 10
Match: AT2G13540.1 (ARM repeat superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-31
Identity = 71/143 (49.65%), Postives = 88/143 (61.54%), Query Frame = 0


Query: 39  ETCFAAIRRELDHYGDEIL-------------------LIGLINLENEDFVKKIVEQTHT 98
           ETCF  IRRE++  GD++L                   LIGL+NLENEDFV+K+VE  H 
Sbjct: 29  ETCFGVIRREIERSGDQVLPFLLQCAEQLPHKIPLYGTLIGLLNLENEDFVQKLVESVHA 88

Query: 99  SFQMS---------------------SKVLLSTSLVVVFETLLSSAATTVDDEKGNPAWQ 142
           +FQ++                     SKV+   SL+VVFETLLSSAATTVD+EKGNP+WQ
Sbjct: 89  NFQVALDSGNCNSIRILLRFMTSLLCSKVIQPASLIVVFETLLSSAATTVDEEKGNPSWQ 148

The following BLAST results are available for this feature:

BLAST of HG10007520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067225.1	5.2e-56	69.06	nuclear cap-binding protein subunit 1 [Cucumis melo var. makuwa] >TYK27755.1 nuc...	[more]
XP_038878426.1	4.3e-42	69.93	nuclear cap-binding protein subunit 1 [Benincasa hispida]	[more]
XP_022154329.1	1.2e-41	69.23	nuclear cap-binding protein subunit 1 [Momordica charantia]	[more]
XP_008450385.1	8.1e-41	68.53	PREDICTED: nuclear cap-binding protein subunit 1 [Cucumis melo]	[more]
XP_004139050.1	1.1e-40	63.23	nuclear cap-binding protein subunit 1 [Cucumis sativus] >KGN66512.1 hypothetical...	[more]

BLAST of HG10007520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIU2	2.3e-30	49.65	Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana OX=3702 GN=ABH1 PE...	[more]
Q10LJ0	2.1e-23	43.36	Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of HG10007520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWR2	2.5e-56	69.06	Nuclear cap-binding protein subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1DLR3	6.0e-42	69.23	nuclear cap-binding protein subunit 1 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A1S3BQ48	3.9e-41	68.53	nuclear cap-binding protein subunit 1 OS=Cucumis melo OX=3656 GN=LOC103492007 PE...	[more]
A0A0A0M082	5.1e-41	63.23	MIF4G domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616300 PE=3 ...	[more]
A0A6J1KQ76	1.1e-40	67.83	nuclear cap-binding protein subunit 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of HG10007520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G13540.1	1.6e-31	49.65	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 36..142 e-value: 6.4E-11 score: 44.2
IPR027159	Nuclear cap-binding protein subunit 1	PANTHER	PTHR12412	CAP BINDING PROTEIN	coord: 57..141
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 39..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007520.1	HG10007520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0051028	mRNA transport
cellular_component	GO:0005846	nuclear cap binding complex
molecular_function	GO:0000339	RNA cap binding