HG10007518 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007518
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA-binding family protein
LocationChr10: 6388479 .. 6397692 (-)
RNA-Seq ExpressionHG10007518
SyntenyHG10007518
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGCGCTGATGTAGAGGCTGTCGACTTCGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCATTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCATCTTCCTCACTTGCTGGTGCTCCAAAGAAGACCAAGGGTCGTGGATTTCGAGACGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCAGATGGCCCTGGCCCCCAACGATGTTAGTTTTTGCCCGTCTCTCTTTCACCATTTCCCCCGCTGTTCTTCTTAATTACTTAGTTTGACAGATTGGGGCTTACCATTTCGTTTTGCTGGTTTTTTTTTTCTTTCGTTTATTAGAGCTAGGGTTATGAAATTTTTTATGGCCATATACTTGGTAGGTGGCGGGTTTAGATTTATTGGCCTGTGTGTTCTATGAAAGGTTGTTTTTTCCCCCTTCAATTGTCTGGAATAATGAGTTGGGAGTAAGCAAATCCTTTCTCCAAGGGATTTTGCTTACTGTTAATGTCGGTTGGTTTGCCCTCTTTGTTTCTGCAATGCTACAGATCTTACCTAGAATTTGATGTGAGAAATCATTGTAGAGGAAAAGGATTCAAGTATTGTTGTGGGAAATTAACATGGAATACCTACACTCAAGAGAAAGTTCAAAGAATGGCCTTATATCCCCAAAACGGTGCACTCTTTGGAAGCGGCTGAGGAGTTTTAAGATCACTTTTACATTCAGTTGCCACCTCGCCTCCTCCTTCTGTAATTTCCTCTTTTCTTCTGCTGGGTGGACTGGACCAACCATTAACACAGAGATATATACAGTGATCTCTCCATTCTATCACTCCACCCATTCAGAAAAGAAAAAGAAAACTGAATGTTTACGGTTTAACCTGATTAAAAGTTGGTTTGTTGACTAAAATAAAGCCATTTCTTCATTCTCTTATGACATACTCTTCCTTCTTATTTGGTTGCATTTGGGATGGCGATGGCCAACAGTAACACCATTGACTTTTTGTGGAGGGTCCTCGTCAATAGTTTTGGATCTTTACTGCTGTGTTTTTCTTCTTCTAAGTGAGCATCAAAAGGATTATATCACAATTTATGGAGGTGTCTCTTTTCAGTGGAGATTTGGGATAGATTTTGGAACACACTTAATTGAGCGTGGCTGGATAAGAAACAATTTGATTGATACATGAAATATCCAAAGAGTACATCAAAACCACTCAAAAGAGATAACAAGCGATACATGACGAACTAATGGGCAGCCCAATTGAAAGAAAAATATACAATTTAATTCATAGGGGAGGGGGGCAACCAAAAGGAGAGAAAAACCAGCAAGATATAAAATGGATTGAAGATGAAAGACATCAATCCATGGAACATCAAACCTAAGCACCCTAAAACCAGAACAAAAACCAAGCCGAAAGCATGCTCTGGGGATCCAAAACAATGTCACAAGAAAACCTAAGTGGAGATAAAAGCCAAAAAGTTACAAGAAACTAAGTTGGTTTTTCACAAGGAACCGATAGAGGATCTTTTTTTATGCATAGCCCTTGGTTTGAATCTTCATTTACCTTAGTGTAGTTGGTTTTTCATTAGAAATAACTGTATAAGCTTTTCTTCTGGATAATTTAGAATGAAAGTAATTGGCGTACATTTTTGGAAAAGGGATGGGAGCAATTGGTTTCTCTTTCTTGTATATTTTGTTTTATTAGTTTCTTCCTTCCCCCTGTCCCTAGTTCGTATCTTTTTCCTTTTATGTTGAATACATCTCAGGTTTCTTATAGAAAATTATGTATAAAAATATTGGTATTTCTTGGATTATCTAGTGATAGGAAGGCTGTGGGCGTATATGGAGAAAATGTGTACTTGTTCTCTCTTCTCAAATTTTTATAGTTTTAGTTAATGGAAGATGTAGACAGAAAATATTTGCTTGCAGAGGTTGCACCAATGTCATCCCTTTCTTCTAATAAATTTGGCTGATTTCTTGCCTTATGAATGAGGTCCACACCCATATTACCAAAGCTCTTAAAATTTTTAAGAGGTGAGGCCATGTTTCTTTTTTTGAAAAGGAAATGAAACTTTTCGTTGATAAAATGAAAAGAGACTAATACTTCAAAATACAAGCTATCTACAAAAGAAAGACAAATAAAGAAAGACAAATAGAAGAGACAACCACAATTGATGAAGAGTAGTACCAGCCAAACAAGATGAAAAGCCTACAACTAAGAAGCACCAAAAGCTTGGAAAAAGAGCCCCTAGAAGAAGCTAAAAGATGAACCGGACCAAAACAAACTGACCAACATAGCGAAACAAGTGATAACAAACCAAAAAACTGGCAAGGTTGAACAACCCAACAAAACTCCCATGTTTCTCAACCTCTATTTGCTTTTAAAGTCCATCTTCCGCTTTATTCTTTTATTAGTATTATTATTATGGTCTAGGGAAGGAAGGTCATCTTCTCAATTGGTTTAAGAATTTAGATCCTTGAAGTTTTTAAGCCTTTGCCAACAATACAAGAACCTCCTTTACATGTTCAAGAGAGGTAGTGACATAAATAGTGTTAAAGATTCATGGTTCATTAGTTACATATTTCTTCTAAAGAGGTAATTTGAGGTTGGTTTCTAATAGGCCTTTGCTGGTTGAGAGGATTTCTGGCTACTTATCTTAAAGGAAGAGTTCTCTTCTTTCTTGGTGGAAGAATAACCTTGGCTTGTTTGGTTCTTTCAAATGACCTTATTCTTCCCCTTTTCAAAGCCCCTTGAAAAGTTATTTAGAAAATGGGGTTGGTTCAATTGGGCTGTTCAAATGATCTTACCTAGTCTCTCCCCCCCGTTTAAAACCCCTCCAAAGGTTACTAAGACAAAAAAATGCTCATCATTCCTTTACCTTTTTAAGGAGTTCTCGATATTGGTTGCTTAAAACAAGGAAATTTGTCCCTTCTGTCCTTGTGTGGGTTTGAATATTTTCCTCGTGTCAGGAGTGGAGTGCAACCAAAGCTCAACATTAACCGGAAGGGGGAAAAGCCATGGGTATATAAGCAAGGATTAGTATCTCAATTGGTACGAAGTTTTTAGGGTGAAACCAAAGTAAAGTCATAATGGTAGATGTAGACCTAGAGGTAAACTTGTTGTTAAGAGAGGTTTGAGGCAGGGCATCCCCTCTCGCCTTTTCTGTTTGCCACTACTGGGGATGCATTAAGTTGTATGGTGCACTTTTACTTGGAAAAGAGGATTGTGAAGGGTCTCACGGTAGGGAAAAATTTGGTGGTGGTCTCGACCTTCAATAAAGGGTCACACTAGTTACTTTGTCACATTTTTGCATATGATCTCACGAGTCATGACTATTATTCATTTCTTACAGAACAAAAGAGACCAAGACTATCCTAAACCCGATTTAATATCTAGGAAATTGTAGTTTCTTATTTATTTCAGTCGGTAGTTGCATGATTTATGCACTTGCTTCTACTTCTGCAGTTCAACTTTTCTCTTAAAAAAGTCTATCAACTGCATTCAGATGGGTAGACTGAACTGAACTCAGTAGTAGGCTGATCGATCAATCTAGTACAACTTATCCCTGATCAAGGCCTACAGATTGTTACCTGCCATACATGGTGTTGCTAGTCATAAGACCCTTTCAGATGAGCAGCTACACCTTGGTTGATTGTGACCCCATTGTTTGGCTTCTGAGCATGTCCTTGATGCACTGTTGTGAACAAAAAAATGTTTAATCATGTGATTTAAAGAATAAGCTGTTTTCTTTCGACTCCTTTTGTAGTAGCACACTCAATTCACAACCTCTTGGTGGTGCACAAAAAAAACAGGAATTTTTTTTTTTGTAATTTTAGCTTGTCATTGATCCAATTGAACTGGAAAGCTCTCCTATAGCCCTTTTGTTTTGTTTTTTGAGGAAGGGGGTTCTCTCTTCCCCTTTCCTTTAGGATGTCCTTTTTTGGGCCTTTTTGTGCATATAATACACATCTTGTTTATTATCTAAAAAAATAGTTGTAGAATAATTCATATGGTCCTTTAACTAATATTCCTTAGATTAATGTCTGATTCTAGTTAATTTATGTAGCTATTGAAGGATGGATCATTCTGGTGACTGGTGTACATGAAGAGGCACAAGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGTATGTTTGGTTCCTATATTATTTAATTATCCCCTTTAAAGAAACAATATTTTTATAGTTTTTTTTTTGTTTCCTATTAAAGAAAAGAACATGCATATATTTTATTGTTTAATAGTTTTAAAAAGTAGAATAACTAAGAAATTTTGGGAGGAATCAAAATTGAAATTTCATATTTTGCTAATCAGATGGTTTGTAAGAAGAATGGAGCAGTATTGTAGAATTTATTTTTATATTTGAAAACAAATTTTAATTTTTTTTATTGGTGTATTCTCCCTTTTTCTTTGCAACATCAGTTCCCTCACCTTTCTTGAAAGCATAATAACTTGTTCTAATATTAAACAAGGTGTGCCAAACAGTTCCTCACCCTATCTGGTGTACCTTTGCCAACCCTTTCGTATTTATTATGTTTTTACAAGTCTTCCCATTGGGGCAATTCTTTTCAAGCTCCATTTGATCTTGTTTGTCTCATCTTTCTTGATTAAATTAAAGTGCATTCCTTATTTTTTTTGAAACGGGAACAAAACCTTTCATTGATGAATGAAATTAGACTCAAAGTACAAAAAAACATAAGAGCAACGAATCAAAATAGTCTTAGGATCAGTAGGTGCACTCGACCATCTCAACTAGATTGATACAACCATAGCACCCTCATCAAATCCTTATACAAAAGAGTTCCTCACAATAAAACTATAAAGTACATGATTACATAGGAAGAACAAAAGCGTTCCAATTAAGACAAATGTCTTGAATAGAGTAATTAGCAATAAGCTTCGATTGGGAGCTCCATGAAGAAGCTAGAAGTCAAGTAGACCCAAGGCGATCCGTCCAATTCGAAGACTTATCATGAAGCACTCTCTACTTACGTTCAAACCAAATTTCTGAAATTAAAACTTTAACAACATTGTATTAAAGAATCTGAGCTTTACAAGAAAGGAGAGGGCCAACCAGAATTTGCTGCATACTCTCTATAGTGGACTTCCCAAAACCCCAAGATGTATATTTTTTTTTTAAAGGGAAACATAACTTTTCATTGATAAAATGAAAATAGACTAATGTTCAAAGATACAATAACCTTCCAGAGGATAGAGAAATTATGAAAAGACAAAGGGAGAAGGAAAAAACCCAAGATATATCGAAAAAAGAAAAAAAACTTCCACCAGCATTTACTTGTATGTTCACTCAAACAATAGGTGCTGTAGGTCATCTTCATTTGCTAAACACAGAGGGCACATGGAAGGGGATAAACAATGATCCCTAAGCTTGTGTTGTAGCGTAGCCGAGCAATTTAATGACCCAAAGAGCAGAATCCAAGTCAACACATTAATTCTTTTGGGACTCTTGGATTTCCAAATGCTTTGATAAATCTCCTTGTCAATAGGCATGGAAGAATTTAATATTTGGACAAAGATTTAACTGAATACCTTCCAGAAGCCTCCAATGCCCAAACCCAAGAGTCTATATTGTGGTTAACCCTTCTGTTTTCTACTTTGAATCAATAGCTGCTGGAACTCTAAACCTCTTCTTCTTTGAGCTGTCTTTGAAATATTAAATTCCAAGAATCCGTGGTAAAGTCCCAATTGTCATTAATACTACCTTATGACAATTAATTAATTAAAAGTGTTGAAAAGGCCAACCTGAGTGTAGAGCACAAGTGGTGACATATTTGTCTTGTCTATTATGGTTTGCACGTTCGAACCCCTATCTTCTTCTTTGCTCTAAATATATATATATATATATTTTTAGAAAAGGAGTACAAAAGGGTTGGATGTTAAGAACAGTAAACCAGTTGCAATGCAAATAATAAATTAGATGGGAGTACCAAAGACTTGGAGAATAAAATGTCCACCAAAGATTATACAGGACAGTAAACAAGCTACAATGCAATAAATAACATTATGGTGTTTCCAATTAGCCAGCACAAGAAGAGAACACCTTACTCAAATAATGAGGTTCTGCAAACTTACCCAGTTACCCTAGAAGGTCTTTTAGGACGACATTAATGAAAGCATGAAAATGCACCATTCAAAGAGTTAGGATTTTTTATTTATTTTTGTTTGTTTGTTTGTAAAAAGGATCCTAATAGAGCGCAATAGCAGTGCACATTAATGAAAAATCAAGCAAACTCATAACCCTTTGAGAACCTTGGAAGAAAGCAACCTAGCAAAGTTCCTATGATGAAGCAAGTTGTTAACTGAATTGACTTTCACATCCATAATTTATCAAGATTAAGCAATGGGGACGTTCTATTTTATTCATAATTTTCTTAGGTAAAGTTACATATCCATTGATGACTTAGATTGCCCATTTTAGATTCAAGCATGCACATTATCTCCCATGTAGATCAACTTTATGATAAAGTTGACAGAACAGTTAAGGATTCACATGATCTTGTATACAACTAGTGCTATCAATCTGATCTCCTTGTCCTATGATTCATTTTGCTTATTACATATGATCGTAATTTGAGCATTAGCCTCTTTTTATTTCATTAATGAAAAATTCTGTTTCTGTTTCAAAAGAAGCTAGTGCTATCAATCTCATAGATGATCTCTTCCGCCATTTTCTTCCAAGGAAACAGATCATTTTATTGATATGGTGAAATGTATAAATAAAAGAATCCCATCTGTGCATAATTATAAGTAATTTTGGATGGTCTTTGGTGCATCCCAAAGATGTTACATCTCTCCTTGGCTCCATAATCTTGGGTCACCCTTTCAAGAATTCCAAAGCTCTTTTGTGGCTGCATATATCTCGTGCTTTCTTTTGAGTATTAGGAAAGGAAAGAAACCAAAAGTTCCCATGGACAAGAATCATCCTTTCGGTAGCTTCTTTGACGTTGTCATTGATCAAGCTATCTCTTTGTGTAGTTCTAATCTTTTTGCTTCATATTCATACACTTCCTACTAAACCACTGTGATAGCTTATTGTAATACGGATTGTATATCCTTTTTGTGGATTTCATACGTCAATGAAATTGTTTCTTATTGAAAAAAAAACTGTGAGGGCAGTAAATTGGAGTTACAAAAAGGAGGGGAGACAATCTACTCCAAGATATAGCTAATAAAGATGTGGATTCAACGAACTTGGTGAAGTCTTCCATTCCATCCACAAGTTTCAAAAGAAAGTCTGAACAATATTCAGCCCAAGTGTCCTTTTCTCCTTTTTGATGGGACGATCCACGAGGACAAGGGAGAAAAAAGAGTAGATATCCTTTCATCTATTTCAATGAAAGTTTGGTTGAAGAACCAACAAAAAGTAGCTTGAATGGAGTTCCAGAAGGATGTTGCAGAGATACAATTGCTGAAAAAGTGGATCTGAGTTTCATAGTCCCTCAAACAGAAGGGGCACCTGGGAGAGTTGAAGAGCGATGGGGATCTTTTTTGATGTTTGTCTTGAGTGGCTAAGCTCCCACATAAAAAAAAAATTTATCCACCAGTTTTTTTCTAAAAGAGGAGAAACATAGAATGACATGCAAAGGGGTCTTAGCCAACAAAAACAAACTATAGGACAACGTGACAAATGTTTCTTCGAATAAAAGCCCTCCAATCCTAGTGTAGTTACAAAAGAACTTATGTTGGCACCTCAATTTGATGCCTTGAACGGTACAACATTACAAAAGGAATTCTAAAAGTTTGACTTATGTGCTAAAATCCTAGCATTTCTGTCAAAGGAGCCCCAGAAGCGTTATACTAGAGTGCTCTGCCTTTTCCTTTGAACCACAGCCTGAAGGGACCTCGGGGGAGCCACTCTGCCACCATTCCTTTTAAGATAATCTGTACGCTGGACTTTGAAATCACTTTTCTTCGGTTCTTGTGAATCCGTAATCCTCATATTTGTTTCTTGCTCTACGAAGTCACAATATTATGATTTATGAAATTTTCATGAGAAATATCTGGGTTGAAAAAAAAAACTTCATCTGAAGGCCAGGTGACAAACTTCTGTGTGGCCCTTCTCTCTTGTACTTGCATATCTCTCATTGAAAGTTGGTTGCTTATCCCAAAGTATAAAGTAACGGGGTATAATGCTTTGCTTGAGATAATTTTTTTTTAATAATATCATAATCATTCTCTTTCATTTGTTCCGAACCAGCATTAGATTTTAGTCAAATGTATACCTTGTTTAATTACAGACGCATGTGAAGCTATTGCAAGCATATCATATTGTTTAGCACAATCACATTCATGTTTCGTTTGTTGAGTTTCGTCTGAATCTGGAACTATTTCCCTTCTTTTCCATAAAATTTGTGAATATTTATTCATTTGTATACGAAACCTTCTGTTTATTACAATAATCTGCTTTTCCATAGTTGTTTGTTGAAGAAGCATGGGCATTCACTTTGAGAACTAAATCATTTTCGTGATAGATGTTTGTATAGGTAAACATATTGTGCATCACAATAATCTGTTTTGCCATAGGTATTTTGCTGAAAAATCTGAGCATTACATTTTGATATCTATTGATTATTTAAGTGACAGCCGTTTGTGTAGGAGCCTTAAATGGATATTCTAAGTTCTATTCTAATATCACATCTTGCTTGGAATGCTGAAACTACCATTTGGGTTTTCGTTCTATCTCATCTGTTGTCTATTGACTTTTGACTATTGTTCTATTGTTACTCTTACTATTATATACATATACATATATATTAATTTTTATTTTGGGTTTGTCAAGGGATATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGGGCTGAACTTCTGACTCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACACAAGGTATGCATCTCCAAGATCTATTCAAGATTTGCGAAGGGAGTTATCAAATGATTGCATTATAGGAAATCCATAAACCATATGTATACCTATATTTTTTTTCGCAGGCCTGCTCGAGAACGGCGTTCGAGGAGCCCTAGGAGGAGATACTGA

mRNA sequence

ATGGCCAGCGCTGATGTAGAGGCTGTCGACTTCGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCATTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCATCTTCCTCACTTGCTGGTGCTCCAAAGAAGACCAAGGGTCGTGGATTTCGAGACGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCAGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTGACTGGTGTACATGAAGAGGCACAAGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGGATATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGGGCTGAACTTCTGACTCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACACAAGGCCTGCTCGAGAACGGCGTTCGAGGAGCCCTAGGAGGAGATACTGA

Coding sequence (CDS)

ATGGCCAGCGCTGATGTAGAGGCTGTCGACTTCGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCATTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCATCTTCCTCACTTGCTGGTGCTCCAAAGAAGACCAAGGGTCGTGGATTTCGAGACGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCAGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTGACTGGTGTACATGAAGAGGCACAAGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGGATATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGGGCTGAACTTCTGACTCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACACAAGGCCTGCTCGAGAACGGCGTTCGAGGAGCCCTAGGAGGAGATACTGA

Protein sequence

MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGRGFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNTRPARERRSRSPRRRY
Homology
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BLAST of HG10007518 vs. NCBI nr
Match: XP_038880227.1 (RNA-binding protein Y14A [Benincasa hispida])

HSP 1 Score: 379.0 bits (972), Expect = 2.4e-101
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

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BLAST of HG10007518 vs. NCBI nr
Match: XP_004139049.1 (RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding protein 8A-B [Cucumis melo] >KGN66511.1 hypothetical protein Csa_007313 [Cucumis sativus])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+G PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

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BLAST of HG10007518 vs. NCBI nr
Match: XP_022961208.1 (RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo] >KAG6590187.1 RNA-binding protein Y14, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023840.1 RNA-binding protein Y14 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.1 bits (954), Expect = 3.0e-99
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

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BLAST of HG10007518 vs. NCBI nr
Match: XP_022154366.1 (RNA-binding protein Y14A [Momordica charantia])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG-PKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAE+AISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 196

[Close]
BLAST of HG10007518 vs. NCBI nr
Match: XP_022988215.1 (RNA-binding protein Y14A-like [Cucurbita maxima])

HSP 1 Score: 368.6 bits (945), Expect = 3.3e-98
Identity = 189/197 (95.94%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSLAG PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of HG10007518 vs. ExPASy Swiss-Prot
Match: B7FAL5 (RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.9e-65
Identity = 138/205 (67.32%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG--APKKTK 60
           + +ADVEAVDF+P++DDLMDED    AD +P AP P+L+S I GG      G    +KTK
Sbjct: 4   VTNADVEAVDFDPDDDDLMDEDA---ADPTP-APAPRLRSTIAGGGGGGGGGDDGQRKTK 63

Query: 61  GRGFRDE-SDRNTRLAG----SDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 120
           GRGFRD+ + R++RLAG    SDFDSL S  GPGP RSIEGWI+LVTGVHEEAQEDDL N
Sbjct: 64  GRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHN 123

Query: 121 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 180
            F +FG++KNLHLNLDRRTGFVKGYALIEYE+FEEA+ AI A+DG ELLTQII+VDWAFS
Sbjct: 124 IFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFS 183

Query: 181 HGPIRRKNTRPARERRSRS-PRRRY 198
           +GP++R+N R    RRSRS PRRRY
Sbjct: 184 NGPVKRRNIRKRSPRRSRSPPRRRY 204

[Close]
BLAST of HG10007518 vs. ExPASy Swiss-Prot
Match: F4I9J7 (RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.8e-65
Identity = 140/206 (67.96%), Postives = 161/206 (78.16%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLAGAPKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFRDE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFR+E  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGP 180
           +FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]
BLAST of HG10007518 vs. ExPASy Swiss-Prot
Match: Q6ATR0 (RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-39
Identity = 99/203 (48.77%), Postives = 126/203 (62.07%), Query Frame = 0 

Query: 2   ASADVEAVDF---EPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTK 61
           A+ DVE VD+   E EE+D MDED           P P + S     +   L G      
Sbjct: 4   AAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHIVSQGVMRSRGRLLG------ 63

Query: 62  GRGFRDESDRNTRLAGSD---FDSLKSADGP--GPQRSIEGWIILVTGVHEEAQEDDLQN 121
                    R+T +  S+   FDSL  A  P  GPQRSIEGWI+LV+GV E+A+EDDL N
Sbjct: 64  ---------RSTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYN 123

Query: 122 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 181
            F +FG +K+LHLNL+RRTG+ KGYAL+EYESFEEA+ AI AM+G +LLT+ + VDWAFS
Sbjct: 124 TFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFS 183

Query: 182 HGPIRRKNTRPARERRSRSPRRR 197
            GPI++  +     RRSR+P RR
Sbjct: 184 RGPIQKLTSTRPLHRRSRTPPRR 191

[Close]
BLAST of HG10007518 vs. ExPASy Swiss-Prot
Match: Q6PH90 (RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-38
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 0 

Query: 55  KKTKGRGFRDESDRNTRLAGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 114
           KK KGRGF  +    TR+   D+DS+ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTRTRIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 174
            FGEFGEIKN+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q ++VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFV 152

Query: 175 HGPIRRKNTRPARERRSRSPRRR 197
            GP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]
BLAST of HG10007518 vs. ExPASy Swiss-Prot
Match: Q5D018 (RNA-binding protein 8A OS=Danio rerio OX=7955 GN=rbm8a PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.1e-38
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 0 

Query: 55  KKTKGRGFRDESDRNTRLAGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 114
           KK KGRGF  E    +R+   D+D++ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGSEEGARSRVR-EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHD 92

Query: 115 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 174
            F EFGEIKNLHLNLDRRTG++KGYAL+EYE+++EA+ A+  ++G EL+ Q I+VDW F 
Sbjct: 93  KFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFV 152

Query: 175 HGPIRRKNTRPARERRSRSPRRR 197
            GP   K+ R    RRSRSP RR
Sbjct: 153 RGP--PKSKRRGGRRRSRSPDRR 172

[Close]
BLAST of HG10007518 vs. ExPASy TrEMBL
Match: A0A0A0M2V3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+G PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]
BLAST of HG10007518 vs. ExPASy TrEMBL
Match: A0A1S3BNH9 (RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+G PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]
BLAST of HG10007518 vs. ExPASy TrEMBL
Match: A0A6J1HB67 (RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.4e-99
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of HG10007518 vs. ExPASy TrEMBL
Match: A0A6J1DNH7 (RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG-PKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAE+AISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 196

[Close]
BLAST of HG10007518 vs. ExPASy TrEMBL
Match: A0A6J1JIZ0 (RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.6e-98
Identity = 189/197 (95.94%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGAPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSLAG PKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of HG10007518 vs. TAIR 10
Match: AT1G51510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.7e-66
Identity = 140/206 (67.96%), Postives = 161/206 (78.16%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLAGAPKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFRDE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFR+E  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGP 180
           +FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]
BLAST of HG10007518 vs. TAIR 10
Match: AT3G11400.1 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-09
Identity = 38/127 (29.92%), Postives = 69/127 (54.33%), Query Frame = 0 

Query: 45  GASSSLAGAPKKTKGRGFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHE 104
           G SS+++ AP   K   +   S R    AG+D    +SA G   +R  +   + VT + E
Sbjct: 172 GESSTMSAAPGTGKA-AYVPPSMR----AGAD----RSAVGSDMRRRNDENSVRVTNLSE 231

Query: 105 EAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQ 164
           + +E DL   F  FG +  +++ +D++TG  +G+  + + S E+A++AI+ ++G      
Sbjct: 232 DTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNL 289

Query: 165 IINVDWA 172
           I+ V+WA
Sbjct: 292 ILRVEWA 289

[Close]
BLAST of HG10007518 vs. TAIR 10
Match: AT3G11400.2 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-09
Identity = 38/127 (29.92%), Postives = 69/127 (54.33%), Query Frame = 0 

Query: 45  GASSSLAGAPKKTKGRGFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHE 104
           G SS+++ AP   K   +   S R    AG+D    +SA G   +R  +   + VT + E
Sbjct: 199 GESSTMSAAPGTGKA-AYVPPSMR----AGAD----RSAVGSDMRRRNDENSVRVTNLSE 258

Query: 105 EAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQ 164
           + +E DL   F  FG +  +++ +D++TG  +G+  + + S E+A++AI+ ++G      
Sbjct: 259 DTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNL 316

Query: 165 IINVDWA 172
           I+ V+WA
Sbjct: 319 ILRVEWA 316

[Close]
BLAST of HG10007518 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0 

Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNTR--------PARERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

[Close]
BLAST of HG10007518 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0 

Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNTR--------PARERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

The following BLAST results are available for this feature:
BLAST of HG10007518 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880227.12.4e-10198.98RNA-binding protein Y14A [Benincasa hispida][more]
XP_004139049.12.7e-10097.97RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding... [more]
XP_022961208.13.0e-9996.45RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding pr... [more]
XP_022154366.13.9e-9997.97RNA-binding protein Y14A [Momordica charantia][more]
XP_022988215.13.3e-9895.94RNA-binding protein Y14A-like [Cucurbita maxima][more]
BLAST of HG10007518 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B7FAL52.9e-6567.32RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 S... [more]
F4I9J73.8e-6567.96RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1[more]
Q6ATR01.2e-3948.77RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 S... [more]
Q6PH901.1e-3857.34RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1[more]
Q5D0183.1e-3857.34RNA-binding protein 8A OS=Danio rerio OX=7955 GN=rbm8a PE=2 SV=1[more]
BLAST of HG10007518 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M2V31.3e-10097.97RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV... [more]
A0A1S3BNH91.3e-10097.97RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1[more]
A0A6J1HB671.4e-9996.45RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 ... [more]
A0A6J1DNH71.9e-9997.97RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=... [more]
A0A6J1JIZ01.6e-9895.94RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 S... [more]
BLAST of HG10007518 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51510.12.7e-6667.96RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G11400.18.9e-0929.92eukaryotic translation initiation factor 3G1 [more]
AT3G11400.28.9e-0929.92eukaryotic translation initiation factor 3G1 [more]
AT5G64200.11.2e-0831.62ortholog of human splicing factor SC35 [more]
AT5G64200.21.2e-0831.62ortholog of human splicing factor SC35 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008111RNA-binding motif protein 8PRINTSPR01738RNABINDINGM8coord: 86..100
score: 79.33
coord: 51..63
score: 50.77
coord: 160..172
score: 55.38
coord: 142..158
score: 44.12
IPR008111RNA-binding motif protein 8PANTHERPTHR45894RNA-BINDING PROTEIN 8Acoord: 2..197
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 96..169
e-value: 4.5E-19
score: 79.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 97..161
e-value: 1.4E-15
score: 56.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 95..173
score: 15.715584
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 39..190
e-value: 1.2E-29
score: 105.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..74
NoneNo IPR availablePANTHERPTHR45894:SF6RNA-BINDING PROTEIN Y14A-LIKEcoord: 2..197
IPR033744RBM8, RNA recognition motifCDDcd12324RRM_RBM8coord: 89..176
e-value: 1.09536E-60
score: 182.032
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 88..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007518.1HG10007518.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010628 positive regulation of gene expression
biological_process GO:0008380 RNA splicing
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0035145 exon-exon junction complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding