HG10007493 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007493
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	Chr10: 6001822 .. 6005275 (-)
RNA-Seq Expression	HG10007493
Synteny	HG10007493

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGCTTTATCTGTGGTGGGTTCTTCAGTGGTGGACTCTCATTCTTCCCCATGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTCGAAAGCGTATGCTAAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTTTCGGCGGATATGATAAATAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGACAGTATGAAGATAACTTTGACGATGTTAAAATGGTAAGAATGTGAATTTGGAAATTAGTATTCATCTGTATACTTAAGAATGTGAATTTAGATAGGTATTTAAGCATGTTTTGGTAGTTTCTTGTGACATTGTGTTGCTGAAATGTATATTACTGGGACAAGAAATCCCATGTAGCTTAATGAACGTTTTAAGTCTGATTCATAAGTGATTTGACTGTGTGGTTCTAGCGTTGTGTAGGATTTAGAGTTATTTTTCATGTTGATAGGACATATTTTTTGGTACTTTGGAGATTATAGTTCTTGGAAGGCTTCATTTTAGTTCCGAAATGATTTGTTTGCAATTCATCTACGCTACGAAGTCTTAGCTGTTCATGTTTCTTTCTAGTTCCTTGATTCTTTTACTATGTGGATAAACATTAATGATATAGAACAACACAACAATTTTTGTCCTAACAATGTGATTCAGATGTAGATGGGGCTCTTAGCATAGGAAAATTGTGGGGAAATTGTGAAAATCCTTTCTTCGAAATGATCACGTGAAGATTTGGCAGAGTGCTAAGGAAGTTGGCCTTTCTACTAATACTCCTAAGGCATGCTAGAATGTAGAGTCACAGCACTAGGACATATGTTCTCTTGCTTGCTAGTGCTTTCAAAAATTGCAGGCCATTTATTCTGGACTATAGTAAGCTAGCTGGAAATGACTTCTTGGATGCTGTGGACTTGGTTGACCATAACAAATGGTTTTAGAGCCAAAATTTTGGTTAAACCATGGTTAACAGGAATTTCTGGCTTATGTAATAGGGAGTGTGTTAACATAAATACGGCATAAAGAAGTAATACAAAACAAAAATGTGTAAACTGTAAAAGATTGTCCCACAATAGCACTTCCACATATTAACTCTACCAAAAGACCTATTACTAGAATAGCTTTCAATACACGAATTACGATTTTGACTGCCCAACGACGATAGAAGTCACATTGGTCAATACAGCCATAATCACACTTGTAACTCAAGTCGATTCATGAGGTTTTTGAAAGCCCCCAGTGAGATACACATGCAATACAAAAACCAACAGGTTGATGCAAGAGGCAACTGAAAATGTTTTTTTTTTATGCTTATGAGATATGCTTGAGACTTAAGTTTTCCATTAAGTTTGTTCTAGTCAAGTCCTGCATTTTCAAATTGTTGGTTGATACTTCTTTTTAGTACGACTTTAATGATTTTCCAGTTTCTTGAGCTTTATCCTTCTCCCATCCTTTGCTAATTCATTTGCCTACGGATTAATTAGTGAACTGACTGAGATTTCTCTGGCTGCAGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAGCTGTATGAAATGAACCCCCCACAGTACAGGTGGCTTTACGAGTACGTGCTATCTTTTGTTGCACTCTGAGACTGGTTATTTTTCTGTGTGTTACAGTAACTGGGGTCAGTTTACAATGCTGGTTTGATATAGATGCATGAAATAGTTGTAGTATCTTATATCATGCAAGCTCAAGTTTAGCTGTCAAATTATTTCATGTTAGTATCGACGTGCTCTTAAATTTTGATTCAGATGTTTTCTTATTCACAGTTTCGTGTTATCCAACAAGCCAACAGATGGAAAACATTTCATCCGCAGGCTTGTAAAGGTACTTCTTAAAATTCATACCTACTTCATGACTTGGATACTTTTTTGTATGAGAAACAAGTAACCTTCATTTCATTAATAAGAGGAAATTACGAAAGAGGCACAAATGATCATAAGAATTACAAAAAATATTGCCAATGAATAGAGAGAGAAGTAAGGTGTGTTCAAAAAGAGTTGAAATCCGTAGCTTTTTCCTTGAAGATGCGACGGTTTTTCTTGAGCCATGATAACCAAAGGATGGCTTTGTTAAGAGAGACCCATAACCTCTTTACTAATCTATGACTTGGATACTATTTAGTTGTGCCGAGAAGCAAAACCTGTCCTAATCTAAGATTTTTTCACTATTGATTTTAGGGCATGTTATATTTTGGAGTGATATTGAATGATTAAAGGCATGAGTGTGGCAAAAGTGATTTTGACCATTTCAAAATCACTCCTAAACATATGATTAGACTCTCACTATAACTTGTTCTAAAGAGCAAAGATGTCATGTCTATTTTTTAGCATTTGGCTATCTCAGTAGAAAAGAAAGGCCTACTGTAGCACACACAGATGTTACAAAATATGATCCGTTTCTCTAGTAATACAGTGGAAAAACAGTTGTTCCAAGTGTATATAAAGTTCCATAACTTGCTGACAAATTAAAAGTAGGAAAAAGAGCTAAAGTCGAAGAATTGTTTATAGAATGGAGGTTTAGTATGTGAAAAATGAATATACATATTGGAGAGAGAAAAAATTGTGGGCCTCACAATTGCATGCCGAGTTCTCAAAGGCTTGTGCCTAAGTGAGGTCATCTTGCTTGACACAAGGTCGGCTTAAATACACAGCTAAATCTGGATCCCAAATATTCCAGTTTAGAGTTTGGACATCAAGATTTAAGGTCATTTATCGTGCGGTAGATGTGGGATGGTTGGCCAATGGCCACAATCACAAAACTTGGTGCAACACTACGACCGACGACGAATTGAACACATGCATGTAAAAGAAATCATTTTAGCTGTGTATTTAAGCTTGACACAAGGTCGGCTTAAATACACAGCTAAAATGATTTCTTTTACTTCTGGATCCCAAACATTCCAGTTTAGAGTTAGGACACCAAGATTTAAGGTCATTTACGGTCTCGAGGCACGCCTTGTAAAATAGTGTTTTACTACACCTGAATCATTGTTTTCCTAATGGACAGGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGCAAATGGGTGAAGGTATTTCTATAATTGTAGTATTCCTTTCATTCAATACAGTATTTTCATTTTGTTATGGGAAGACCAGTATTTAAATGGATGGAAACAAAAGTTTATTTCTTCTGTGGTGTAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAAAAGATTGGCTAA

mRNA sequence

ATGGTGGGAGCTTTATCTGTGGTGGGTTCTTCAGTGGTGGACTCTCATTCTTCCCCATGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTCGAAAGCGTATGCTAAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTTTCGGCGGATATGATAAATAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGACAGTATGAAGATAACTTTGACGATGTTAAAATGGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAAAAGATTGGCTAA

Coding sequence (CDS)

ATGGTGGGAGCTTTATCTGTGGTGGGTTCTTCAGTGGTGGACTCTCATTCTTCCCCATGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTCGAAAGCGTATGCTAAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTTTCGGCGGATATGATAAATAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGACAGTATGAAGATAACTTTGACGATGTTAAAATGGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAAAAGATTGGCTAA

Protein sequence

MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG

Homology

[Close]

BLAST of HG10007493 vs. NCBI nr
Match: XP_038879929.1 (chaperonin-like RbcX protein 2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 165/218 (75.69%), Postives = 167/218 (76.61%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRMLKPKHLDL 60
           MVGALSVVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVM KKN MGR R+ K KHLDL
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKNLMGRNRLPKSKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120
           SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120

Query: 121 ------------------------------------EQQDLAERVMITRLHLYGKWVKKC 172
                                               EQQDLAERVMITRLHLYGKWVKKC
Sbjct: 121 VRTVMNQLYEMNPPQYSFVLSNKPTDGKYFIRRLVKEQQDLAERVMITRLHLYGKWVKKC 180

[Close]

BLAST of HG10007493 vs. NCBI nr
Match: XP_038879928.1 (chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 304.7 bits (779), Expect = 5.1e-79
Identity = 165/222 (74.32%), Postives = 167/222 (75.23%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRMLKPKHLDL 60
           MVGALSVVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVM KKN MGR R+ K KHLDL
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKNLMGRNRLPKSKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120
           SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120

Query: 121 ----------------------------------------EQQDLAERVMITRLHLYGKW 172
                                                   EQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKYFIRRLVKEQQDLAERVMITRLHLYGKW 180

[Close]

BLAST of HG10007493 vs. NCBI nr
Match: XP_004139034.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN66488.1 hypothetical protein Csa_007379 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 2.1e-77
Identity = 162/222 (72.97%), Postives = 166/222 (74.77%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKK  S GR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120
           SSSFVDNGREWLLS DMINRSSRKQ KNRRL+VVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 ----------------------------------------EQQDLAERVMITRLHLYGKW 172
                                                   EQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

[Close]

BLAST of HG10007493 vs. NCBI nr
Match: XP_008450421.1 (PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo] >TYK18852.1 RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 2.8e-77
Identity = 162/222 (72.97%), Postives = 166/222 (74.77%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120
           SSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 ----------------------------------------EQQDLAERVMITRLHLYGKW 172
                                                   EQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

[Close]

BLAST of HG10007493 vs. NCBI nr
Match: XP_022926878.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.0 bits (754), Expect = 4.0e-76
Identity = 157/221 (71.04%), Postives = 164/221 (74.21%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLS 60
           MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMK+NSMGRKR+ KPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM----------- 120
           SSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQYED FDDVKM           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 ---------------------------------------EQQDLAERVMITRLHLYGKWV 172
                                                  E+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

[Close]

BLAST of HG10007493 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.8e-33
Identity = 90/218 (41.28%), Postives = 118/218 (54.13%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRML-KPKHLDL 60
           MV A  VVGS V+DS SSPCLCLDA  T +I                RK++L K ++L+L
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIR---------------RKKILGKARNLEL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVK----------- 120
            SSF  +   + LS   ++R + ++ K + L+V +++ G Y+D F DV+           
Sbjct: 61  GSSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKA 120

Query: 121 ---------------------------------------MEQQDLAERVMITRLHLYGKW 168
                                                   E Q+LAERVMITRLHLYGKW
Sbjct: 121 VRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKW 180

[Close]

BLAST of HG10007493 vs. ExPASy TrEMBL
Match: A0A0A0LXJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613600 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.0e-77
Identity = 162/222 (72.97%), Postives = 166/222 (74.77%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKK  S GR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120
           SSSFVDNGREWLLS DMINRSSRKQ KNRRL+VVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 ----------------------------------------EQQDLAERVMITRLHLYGKW 172
                                                   EQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

[Close]

BLAST of HG10007493 vs. ExPASy TrEMBL
Match: A0A5D3D5P8 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00500 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 162/222 (72.97%), Postives = 166/222 (74.77%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120
           SSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 ----------------------------------------EQQDLAERVMITRLHLYGKW 172
                                                   EQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

[Close]

BLAST of HG10007493 vs. ExPASy TrEMBL
Match: A0A1S3BNK3 (uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 162/222 (72.97%), Postives = 166/222 (74.77%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120
           SSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 ----------------------------------------EQQDLAERVMITRLHLYGKW 172
                                                   EQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

[Close]

BLAST of HG10007493 vs. ExPASy TrEMBL
Match: A0A6J1EJF5 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433858 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 157/221 (71.04%), Postives = 164/221 (74.21%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLS 60
           MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMK+NSMGRKR+ KPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM----------- 120
           SSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQYED FDDVKM           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 ---------------------------------------EQQDLAERVMITRLHLYGKWV 172
                                                  E+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

[Close]

BLAST of HG10007493 vs. ExPASy TrEMBL
Match: A0A6J1HZ31 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467533 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.4e-76
Identity = 157/221 (71.04%), Postives = 164/221 (74.21%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLS 60
           MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMKK+SMGRKR+ KPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM----------- 120
           SSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQYED FDDVKM           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 ---------------------------------------EQQDLAERVMITRLHLYGKWV 172
                                                  E+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

[Close]

BLAST of HG10007493 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 141.4 bits (355), Expect = 7.0e-34
Identity = 90/218 (41.28%), Postives = 118/218 (54.13%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRML-KPKHLDL 60
           MV A  VVGS V+DS SSPCLCLDA  T +I                RK++L K ++L+L
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIR---------------RKKILGKARNLEL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVK----------- 120
            SSF  +   + LS   ++R + ++ K + L+V +++ G Y+D F DV+           
Sbjct: 61  GSSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKA 120

Query: 121 ---------------------------------------MEQQDLAERVMITRLHLYGKW 168
                                                   E Q+LAERVMITRLHLYGKW
Sbjct: 121 VRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKW 180

The following BLAST results are available for this feature:

BLAST of HG10007493 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879929.1	1.8e-79	75.69	chaperonin-like RbcX protein 2, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_038879928.1	5.1e-79	74.32	chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_004139034.1	2.1e-77	72.97	chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN66488.1 hypo...	[more]
XP_008450421.1	2.8e-77	72.97	PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo] >TYK18852.1 RcbX ...	[more]
XP_022926878.1	4.0e-76	71.04	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1...	[more]

BLAST of HG10007493 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	9.8e-33	41.28	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of HG10007493 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXJ9	1.0e-77	72.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613600 PE=4 SV=1	[more]
A0A5D3D5P8	1.4e-77	72.97	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BNK3	1.4e-77	72.97	uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=...	[more]
A0A6J1EJF5	2.0e-76	71.04	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HZ31	4.4e-76	71.04	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of HG10007493 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	7.0e-34	41.28	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 102..168 e-value: 2.5E-17 score: 64.9
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 108..168
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 110..171 coord: 1..109
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 110..171
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007493.1	HG10007493.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone