HG10007483 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007483
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr10: 5862640 .. 5865014 (-)
RNA-Seq Expression	HG10007483
Synteny	HG10007483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAATTCACGCCCAATTGATTTCAACCGGTTTGATCTCAGATGGGTTTGCTCTCAGTCGCCTCGTTGCCTTCTGTGCGATTTCGGAATGGCGAAATCTCGACTACTGTGACAAAATTCTTGACAATGCTGCAAACCCAAACGTTTTTTCTTGGAATGTGGCGATTAGGGGCTATTTAGAGAGTGAAAATCCCAGAAATGCTGTTCTTTTGTACAGGAAAATGCTGAGAAAAGGTAGGTCGATTCCTGATAATTATACTTACCCTCTGTTGTTCAAAGTTTGTGCCGGTTTGTCGTTGAGTTGCACCGCTAATGAGATTCTTGGGCATGTACTACAGTTGGGTTTTGATTCGGATTTGTTTGTGCACAATGCGATCATTCATGTTTTGGTTTCATGTGGAGAATTGTTGGCTGCACGTAAGGTGTTCGATGAAAGTTGTGTGAGAGATTTGGTTTCTTGGAACTCCATTATCAATGGATACGTTAGGTGTGGGCTGGCAGACGAGGCGTTGGATCTTTATTACAAGATGGGGGAGCTGAAAGTGAAGCCAGATGAGGTCACAATGATTGGAGTCGTTTCAGCTTCTGCGCAGCTTGAAAATTTAGCTCTTGGAAGAAAGCTTCATCAATTCATTGAAGAAATGGGTTTGAATTTGACCGTTCCACTTGCCAATGCGTTGATGGATATGTATATTAAGTGTAAGCATATTGAGGCTGCAAAAATACTATTTGAGAACATGACAAAGAAAACTATTGTTTCATGGACTACAATGGTTGTTGGATATGCCAAATTTGGGTTGTTGGAAAGTGCTGTGAGTCTGTTCAATGAGATGCCAGAGAAGGATGTTGTGCCTTGGAATGCTCTAATTGGTGGCTTTGTTCAAGCCAAGCGTAGTAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAGGCCAGCAACGTTGACCCGGATGAGGTTACTGTTGTTAGCTGTTTATCTGCGTGCTCTCAACTTGGGGCACTTGATGTTGGAATTTGGATGCATCACTATGTTGATAAACATAATCTTACTATGAATGTTGCCTTAGGAACTGCTCTAGTTGACATGTATGCTAAGTGTGGGAACATAAAAAAGGCTTTACAGGTTTTTGAGGAGATGCCGGGAAGAAACTCACTGACATGGACAGCTATAATTTGTGGTCTAGCGCTTCATGGACAAGCACATGCTGCCATATCTTACTTCTCGGAGATGATTAGCATTGGATTGGTGCCTGACGAAATCACCTTCATTGGCGTCCTATCAGCTTGTTGTCATGGTGGACTGGTTGATCAGGGACGAGACTATTTTTACCAAATGAGCTCCAAATATGGTATTTCCCCGAAACTTAAGCACTATTCTTGTTTGGTGGACCTTCTAGGTAGGGCTGGCTTCTTGGAAGAGGCAGAAGAGCTTATTAAGAGCATGCCTTTCGAGGCAGATGCCGTAGTGTGGGGAGCATTGTTCTTTGGCAGCCGTATTCATGGGAACGTTCATATGGGAGAAAGAGCAGCTTCTAAGCTTCTTGAGTTGGATCCTCATGATAGTGGAATTTATGTTTTGCTTGCAAATATGTATGGTGATGCTAATATGTGGGAGCAGGCAAGGAAGGTAAGAAAGATGATGGAAGAAAGAGGAGTAGAGAAAACACCAGGCTGTAGTTCAATTGAGATGAACGGTTTAGTTTATGAATTTATAATTCGTGACAAGTCACATCCTCAATCGGAGAAAATTTATGAGTGTTTAACACGGTTAACAAGACAACTTGAACTTGTTGAGGTTGAAACTTTTTCATTCAAAGAATTTTCCTCTTGGTGTTAATCTAGGTTGCCAGATTTGAGTTGAGAAACCTACCAAGCTAGCTCACACATGCTTGTGCTAAAAAAAATACCATCACGGAAAGCTGTCTAGCACCCCGAAGGATTTCCCAGCTGTAAGGATTTGAAAATTTGAACATATCCTTTGAAGTCTTGGGTTCAAGCCTCTGTGATTCAAACCCCTTCATATCTCCCACAGAGAGGCCTTGAGTGGGTGAAGTCTATCTGAAGATTAGTGAGAGATGGGCCATAAGTATAATTCAAGGAGTAGGGCCCTCCAACACCCGGTTTAAAAAAGGTTAGTTAATAAAAGAAAGCTTTCTAGTCTAGAAGTGATTATGATTCTCTTTGTTAATTTGAGATGATGAAGTTCTACCTCTCGTAGTCCAAAAAGTGCTTTTGCAGAAAGATCATGATTTGAAGAATCTTCTGAATGGTAAGAAAATGTTCTGTGATGCATGTCATGAGTTCCTTTCAAGTCTTTTTCAGTTTCTTGACTTTTAATTTGCATTTCCTTGTCCAGTTATATTTGAAGCATGA

mRNA sequence

ATGAGGCAAATTCACGCCCAATTGATTTCAACCGGTTTGATCTCAGATGGGTTTGCTCTCAGTCGCCTCGTTGCCTTCTGTGCGATTTCGGAATGGCGAAATCTCGACTACTGTGACAAAATTCTTGACAATGCTGCAAACCCAAACGTTTTTTCTTGGAATGTGGCGATTAGGGGCTATTTAGAGAGTGAAAATCCCAGAAATGCTGTTCTTTTGTACAGGAAAATGCTGAGAAAAGTTATATTTGAAGCATGA

Coding sequence (CDS)

ATGAGGCAAATTCACGCCCAATTGATTTCAACCGGTTTGATCTCAGATGGGTTTGCTCTCAGTCGCCTCGTTGCCTTCTGTGCGATTTCGGAATGGCGAAATCTCGACTACTGTGACAAAATTCTTGACAATGCTGCAAACCCAAACGTTTTTTCTTGGAATGTGGCGATTAGGGGCTATTTAGAGAGTGAAAATCCCAGAAATGCTGTTCTTTTGTACAGGAAAATGCTGAGAAAAGTTATATTTGAAGCATGA

Protein sequence

MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGYLESENPRNAVLLYRKMLRKVIFEA

Homology

[Close]

BLAST of HG10007483 vs. NCBI nr
Match: XP_038878576.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa hispida] >XP_038878577.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa hispida] >XP_038878578.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           MRQIHAQ+ISTGLISDGFALSRLVAFCAISEWRNLDYCDKILD+AANPNVFSWNVAIRGY
Sbjct: 70  MRQIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDDAANPNVFSWNVAIRGY 129

Query: 61  LESENPRNAVLLYRKMLRK 80
           LESENPRNA+LLYRKMLRK
Sbjct: 130 LESENPRNAILLYRKMLRK 148

[Close]

BLAST of HG10007483 vs. NCBI nr
Match: KAG7022080.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
          MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPN+FSWNVAIRGY
Sbjct: 4  MRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAIRGY 63

Query: 61 LESENPRNAVLLYRKMLRK 80
          LESENPRNAV LYRKMLRK
Sbjct: 64 LESENPRNAVFLYRKMLRK 82

[Close]

BLAST of HG10007483 vs. NCBI nr
Match: XP_022966942.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima] >XP_022966951.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima] >XP_022966960.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA +PNVFSWNVAIRGY
Sbjct: 70  MRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPSPNVFSWNVAIRGY 129

Query: 61  LESENPRNAVLLYRKMLRK 80
           LESENPRNAVLLYRKMLRK
Sbjct: 130 LESENPRNAVLLYRKMLRK 148

[Close]

BLAST of HG10007483 vs. NCBI nr
Match: XP_022927674.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927681.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927688.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927696.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927700.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPN+FSWNVAIRGY
Sbjct: 70  MRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAIRGY 129

Query: 61  LESENPRNAVLLYRKMLRK 80
           LESENPRNAV LYRKMLRK
Sbjct: 130 LESENPRNAVFLYRKMLRK 148

[Close]

BLAST of HG10007483 vs. NCBI nr
Match: XP_023531862.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 1.9e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPNVFSWNVAIRGY
Sbjct: 70  MRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVFSWNVAIRGY 129

Query: 61  LESENPRNAVLLYRKMLRK 80
           LESENPR AV LYRKMLRK
Sbjct: 130 LESENPRYAVFLYRKMLRK 148

[Close]

BLAST of HG10007483 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-21
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           ++QI AQ+I  GLI D FA SRL+AFCA+SE R LDY  KIL    NPN+FSWNV IRG+
Sbjct: 69  LKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGF 128

Query: 61  LESENPRNAVLLYRKMLR 79
            ESENP+ + LLY++MLR
Sbjct: 129 SESENPKESFLLYKQMLR 146

[Close]

BLAST of HG10007483 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-11
Identity = 29/78 (37.18%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRN-LDYCDKILDNAANPNVFSWNVAIRG 60
           ++QIHA+++ TGL+ D +A+++ ++FC  S   + L Y   + D    P+ F WN+ IRG
Sbjct: 30  LKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 89

Query: 61  YLESENPRNAVLLYRKML 78
           +  S+ P  ++LLY++ML
Sbjct: 90  FSCSDEPERSLLLYQRML 107

[Close]

BLAST of HG10007483 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-09
Identity = 26/77 (33.77%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           ++Q H  +I TG  SD ++ S+L A  A+S + +L+Y  K+ D    PN F+WN  IR Y
Sbjct: 46  LKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAY 105

Query: 61  LESENPRNAVLLYRKML 78
               +P  ++  +  M+
Sbjct: 106 ASGPDPVLSIWAFLDMV 122

[Close]

BLAST of HG10007483 vs. ExPASy Swiss-Prot
Match: O49399 (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-09
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAIS-EWRNLDYCDKILDNAANPNVFSWNVAIRG 60
           ++Q HA ++ TGL  D F+ S+LVAF A + E + + Y   IL+   +PN F+ N  IR 
Sbjct: 55  IQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRA 114

Query: 61  YLESENPRNAVLLYRKMLRKVIF 83
           Y  S  P  A+ ++R+ML   +F
Sbjct: 115 YANSSTPEVALTVFREMLLGPVF 137

[Close]

BLAST of HG10007483 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.3e-09
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           ++QIHA LI TGLISD    SR++AFC  S   +++Y   +     + N F WN  IRG+
Sbjct: 41  LKQIHASLIKTGLISDTVTASRVLAFCCASP-SDMNYAYLVFTRINHKNPFVWNTIIRGF 100

Query: 61  LESENPRNAVLLYRKML 78
             S  P  A+ ++  ML
Sbjct: 101 SRSSFPEMAISIFIDML 116

[Close]

BLAST of HG10007483 vs. ExPASy TrEMBL
Match: A0A6J1HQQ6 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466501 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA +PNVFSWNVAIRGY
Sbjct: 70  MRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPSPNVFSWNVAIRGY 129

Query: 61  LESENPRNAVLLYRKMLRK 80
           LESENPRNAVLLYRKMLRK
Sbjct: 130 LESENPRNAVLLYRKMLRK 148

[Close]

BLAST of HG10007483 vs. ExPASy TrEMBL
Match: A0A6J1ELP9 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111434490 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           MRQIHAQ++STGLISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPN+FSWNVAIRGY
Sbjct: 70  MRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAIRGY 129

Query: 61  LESENPRNAVLLYRKMLRK 80
           LESENPRNAV LYRKMLRK
Sbjct: 130 LESENPRNAVFLYRKMLRK 148

[Close]

BLAST of HG10007483 vs. ExPASy TrEMBL
Match: A0A5A7UVG6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00300 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.5e-34
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           M+QIHAQ+ISTGLISDGFALSRLVAFCAISEWRNLDYCDKIL+NAANPNVFSWN+AIRGY
Sbjct: 70  MKQIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANPNVFSWNMAIRGY 129

Query: 61  LESENPRNAVLLYRKMLRK 80
           +ESENPR AVLLYR MLRK
Sbjct: 130 IESENPRYAVLLYRNMLRK 148

[Close]

BLAST of HG10007483 vs. ExPASy TrEMBL
Match: A0A1S3BP74 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492040 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.5e-34
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           M+QIHAQ+ISTGLISDGFALSRLVAFCAISEWRNLDYCDKIL+NAANPNVFSWN+AIRGY
Sbjct: 70  MKQIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANPNVFSWNMAIRGY 129

Query: 61  LESENPRNAVLLYRKMLRK 80
           +ESENPR AVLLYR MLRK
Sbjct: 130 IESENPRYAVLLYRNMLRK 148

[Close]

BLAST of HG10007483 vs. ExPASy TrEMBL
Match: A0A6J1DMT0 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021456 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           M+Q+ AQ+ISTG ISDGFALSRLVAFCAISEWRNLDYCDKILDNA NPNVFSWNVAIRGY
Sbjct: 71  MKQVQAQMISTGFISDGFALSRLVAFCAISEWRNLDYCDKILDNAENPNVFSWNVAIRGY 130

Query: 61  LESENPRNAVLLYRKMLRK 80
            ESENPRNAVL+YRKMLRK
Sbjct: 131 SESENPRNAVLMYRKMLRK 149

[Close]

BLAST of HG10007483 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           ++QI AQ+I  GLI D FA SRL+AFCA+SE R LDY  KIL    NPN+FSWNV IRG+
Sbjct: 69  LKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGF 128

Query: 61  LESENPRNAVLLYRKMLR 79
            ESENP+ + LLY++MLR
Sbjct: 129 SESENPKESFLLYKQMLR 146

[Close]

BLAST of HG10007483 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-12
Identity = 29/78 (37.18%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRN-LDYCDKILDNAANPNVFSWNVAIRG 60
           ++QIHA+++ TGL+ D +A+++ ++FC  S   + L Y   + D    P+ F WN+ IRG
Sbjct: 30  LKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 89

Query: 61  YLESENPRNAVLLYRKML 78
           +  S+ P  ++LLY++ML
Sbjct: 90  FSCSDEPERSLLLYQRML 107

[Close]

BLAST of HG10007483 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 26/77 (33.77%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           ++Q H  +I TG  SD ++ S+L A  A+S + +L+Y  K+ D    PN F+WN  IR Y
Sbjct: 46  LKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAY 105

Query: 61  LESENPRNAVLLYRKML 78
               +P  ++  +  M+
Sbjct: 106 ASGPDPVLSIWAFLDMV 122

[Close]

BLAST of HG10007483 vs. TAIR 10
Match: AT4G18840.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAIS-EWRNLDYCDKILDNAANPNVFSWNVAIRG 60
           ++Q HA ++ TGL  D F+ S+LVAF A + E + + Y   IL+   +PN F+ N  IR 
Sbjct: 55  IQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRA 114

Query: 61  YLESENPRNAVLLYRKMLRKVIF 83
           Y  S  P  A+ ++R+ML   +F
Sbjct: 115 YANSSTPEVALTVFREMLLGPVF 137

[Close]

BLAST of HG10007483 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-10
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1   MRQIHAQLISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDNAANPNVFSWNVAIRGY 60
           ++QIHA LI TGLISD    SR++AFC  S   +++Y   +     + N F WN  IRG+
Sbjct: 41  LKQIHASLIKTGLISDTVTASRVLAFCCASP-SDMNYAYLVFTRINHKNPFVWNTIIRGF 100

Query: 61  LESENPRNAVLLYRKML 78
             S  P  A+ ++  ML
Sbjct: 101 SRSSFPEMAISIFIDML 116

The following BLAST results are available for this feature:

BLAST of HG10007483 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878576.1	4.5e-36	96.20	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa ...	[more]
KAG7022080.1	2.9e-35	92.41	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022966942.1	2.9e-35	93.67	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]
XP_022927674.1	2.9e-35	92.41	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]
XP_023531862.1	1.9e-34	92.41	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]

BLAST of HG10007483 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJZ3	1.5e-21	62.82	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
Q9FJY7	5.2e-11	37.18	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
O82380	2.8e-09	33.77	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
O49399	3.7e-09	38.55	Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX...	[more]
Q9SJG6	8.3e-09	40.26	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]

BLAST of HG10007483 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQQ6	1.4e-35	93.67	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbit...	[more]
A0A6J1ELP9	1.4e-35	92.41	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbit...	[more]
A0A5A7UVG6	4.5e-34	91.14	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BP74	4.5e-34	91.14	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucumis ...	[more]
A0A6J1DMT0	1.0e-33	89.87	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Momordic...	[more]

BLAST of HG10007483 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22410.1	1.0e-22	62.82	SLOW GROWTH 1	[more]
AT5G66520.1	3.7e-12	37.18	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	2.0e-10	33.77	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18840.1	2.6e-10	38.55	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G42920.1	5.9e-10	40.26	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 51..79 e-value: 0.0012 score: 16.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 49..79 score: 8.714292
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..82 e-value: 2.2E-6 score: 29.3
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 2..81
None	No IPR available	PANTHER	PTHR47925:SF92	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 2..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007483.1	HG10007483.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900865	chloroplast RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding