HG10007480 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007480
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProline-rich protein HaeIII subfamily 1-like
LocationChr10: 5821603 .. 5822028 (-)
RNA-Seq ExpressionHG10007480
SyntenyHG10007480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTCTCTCTATGGAAACCCAAGAGAGTACCTGACTTAGCTCTACCTTTCAGCTTGGAAATACTATCGAATGAAGAACGCACTCCCCTTTCTGGACGGAGTAAAAGAACTTCAGATAATCCACCTCCCCCACCGCATGCCTCATCTATCATTTTACACAAGCAATCTGGGATCAATTTTAGAATATTACCAAAAGGCGTACGTATTCCTCCGTCTGGGCCGAGTCAAAGAGCTTCTGAGAGTCCAGCTCCCCCACTGCATGTCCCATCTGTCGTTTTACACAAGGAATCTGAAATCAACTTCAGAGTATTACCAAAAGGAGTGCGTATTCCTCCGTCTGGGCCGAGCAGAAGATTTTCAGACTATCCACCTCCTCCACCGCATGCTCCTTCCGTTGTTTTACAGAATAGATTGATTTTGTGA

mRNA sequence

ATGCATTTCTCTCTATGGAAACCCAAGAGAGTACCTGACTTAGCTCTACCTTTCAGCTTGGAAATACTATCGAATGAAGAACGCACTCCCCTTTCTGGACGGAGTAAAAGAACTTCAGATAATCCACCTCCCCCACCGCATGCCTCATCTATCATTTTACACAAGCAATCTGGGATCAATTTTAGAATATTACCAAAAGGCGTACGTATTCCTCCGTCTGGGCCGAGTCAAAGAGCTTCTGAGAGTCCAGCTCCCCCACTGCATGTCCCATCTGTCGTTTTACACAAGGAATCTGAAATCAACTTCAGAGTATTACCAAAAGGAGTGCGTATTCCTCCGTCTGGGCCGAGCAGAAGATTTTCAGACTATCCACCTCCTCCACCGCATGCTCCTTCCGTTGTTTTACAGAATAGATTGATTTTGTGA

Coding sequence (CDS)

ATGCATTTCTCTCTATGGAAACCCAAGAGAGTACCTGACTTAGCTCTACCTTTCAGCTTGGAAATACTATCGAATGAAGAACGCACTCCCCTTTCTGGACGGAGTAAAAGAACTTCAGATAATCCACCTCCCCCACCGCATGCCTCATCTATCATTTTACACAAGCAATCTGGGATCAATTTTAGAATATTACCAAAAGGCGTACGTATTCCTCCGTCTGGGCCGAGTCAAAGAGCTTCTGAGAGTCCAGCTCCCCCACTGCATGTCCCATCTGTCGTTTTACACAAGGAATCTGAAATCAACTTCAGAGTATTACCAAAAGGAGTGCGTATTCCTCCGTCTGGGCCGAGCAGAAGATTTTCAGACTATCCACCTCCTCCACCGCATGCTCCTTCCGTTGTTTTACAGAATAGATTGATTTTGTGA

Protein sequence

MHFSLWKPKRVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGINFRILPKGVRIPPSGPSQRASESPAPPLHVPSVVLHKESEINFRVLPKGVRIPPSGPSRRFSDYPPPPPHAPSVVLQNRLIL
Homology
BLAST of HG10007480 vs. NCBI nr
Match: XP_038882352.1 (uncharacterized protein LOC120073615 [Benincasa hispida])

HSP 1 Score: 194.1 bits (492), Expect = 8.0e-46
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 0

Query: 1   MHFSLWKPKRVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGIN 60
           +HFSL K KR+PDLA PF+L ILS EER P SG S+ TSDNPPPPPH  SIILHK+S IN
Sbjct: 59  IHFSLGKYKRIPDLAPPFNLGILSKEERVPPSGLSQSTSDNPPPPPHVISIILHKESRIN 118

Query: 61  FRILPKGVRIPPSGPSQRASESPAPPLHVPSVVLHKESEINFRVLPKGVRIPPSGPSRRF 120
           FR+L KG RIPPSGPSQR SESP PP H  SV+LHK+  INF +LPK + IPPSGPS+RF
Sbjct: 119 FRVLSKGNRIPPSGPSQRTSESPPPPPHALSVILHKKPGINFGILPKSMHIPPSGPSKRF 178

Query: 121 SDYPPPPPHAPSVV 135
           S+YP PP HAPSV+
Sbjct: 179 SNYPSPPTHAPSVI 192

BLAST of HG10007480 vs. NCBI nr
Match: KAA0040932.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK10605.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-35
Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 0

Query: 2   HFSLWKPKRVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGINF 61
           HFS  KPK++PDLA PFSL ILS   RTP SG S+ TS+N PP PH + IILHK+S +NF
Sbjct: 59  HFSWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNN-PPSPHVAPIILHKESMVNF 118

Query: 62  RILPKGVRIPPSGPSQRASESPAPPLHVPSVVLHKESEINFRVLPKGVRIPPSGPSRRFS 121
            ILPKGVRIPPSGPS+R S+ P P  +  S+   KES I + +LPKGVRIPPSGPS+R S
Sbjct: 119 GILPKGVRIPPSGPSRRTSDPPPPLSNFHSI---KESRIKYGILPKGVRIPPSGPSKRNS 178

Query: 122 DYPPPPP---HAPSVV 135
           DY PPPP   HAPS++
Sbjct: 179 DYYPPPPMHLHAPSII 190

BLAST of HG10007480 vs. NCBI nr
Match: KAG6603169.1 (hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 7.8e-33
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 0

Query: 30  PLSGRSKRTSDNPPPPPHASSIILHKQSGINFRILPKGVRIPPSGPSQRASE-SPAPPLH 89
           P SG S+RTSD PPPPP ASS+IL+KQS INF +LPKGV IPPSGPSQR S   P PPLH
Sbjct: 132 PPSGPSQRTSDYPPPPPRASSVILNKQSKINFGMLPKGVPIPPSGPSQRTSNYPPPPPLH 191

Query: 90  VPSVVLHKESEINFRVLPKGVRIPPSGPSRRFSDYPPPPPHAPSVVLQNR 139
             SV+L+ +S+INF +LPKGV IPPSGPS+R SDYPPPPPHA S +L  +
Sbjct: 192 ASSVILNTQSKINFGMLPKGVPIPPSGPSQRTSDYPPPPPHASSFILNTQ 241

BLAST of HG10007480 vs. NCBI nr
Match: XP_022967687.1 (actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima])

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-31
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 10  RVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGINFRILPKGVR 69
           R P  +L F +  L      P S  S+RTSD PPPPP ASSIIL+K S IN  +LP+GV 
Sbjct: 233 RTPSPSLVFGM--LPKGVPIPPSRPSQRTSDYPPPPPRASSIILNKHSKINLGMLPRGVP 292

Query: 70  IPPSGPSQRASESPAPPLHVPSVVLHKESEINFRVLPKGVRIPPSGPSRRFSDYPPPPPH 129
           IPPSGPSQR S+ P PP H  SV+L+K+S+INF +LPKGV IPPSGPS+R S YPPPPP 
Sbjct: 293 IPPSGPSQRTSDYPPPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQRTSXYPPPPPR 352

Query: 130 APSVVLQNR 139
           A SV+L  +
Sbjct: 353 ASSVILNKQ 359

BLAST of HG10007480 vs. NCBI nr
Match: KAA0043502.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK01137.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-29
Identity = 77/134 (57.46%), Postives = 92/134 (68.66%), Query Frame = 0

Query: 1   MHFSLWKPKRVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGIN 60
           +HFSL K K  P+    F   I S + R P SG S+R+SD+PP P    S+IL K+S IN
Sbjct: 58  IHFSLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSDSPPSP----SMILPKESRIN 117

Query: 61  FRILPKGVRIPPSGPSQRASESPAPPLHVPSVVLHKESEINFRVLPKGVRIPPSGPSRRF 120
           F ILPKG RIPPSGPSQR S+SP P    PS  LHK S + F +LPKG  IPPSGPS+R 
Sbjct: 118 FGILPKGSRIPPSGPSQRFSDSPLP----PSTFLHKGSNMIFGMLPKGHHIPPSGPSKRT 177

Query: 121 SDYPPPPPHAPSVV 135
           SD PPPPPH+PS++
Sbjct: 178 SDNPPPPPHSPSLI 183

BLAST of HG10007480 vs. ExPASy TrEMBL
Match: A0A5D3CGG1 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00020 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.8e-35
Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 0

Query: 2   HFSLWKPKRVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGINF 61
           HFS  KPK++PDLA PFSL ILS   RTP SG S+ TS+N PP PH + IILHK+S +NF
Sbjct: 59  HFSWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNN-PPSPHVAPIILHKESMVNF 118

Query: 62  RILPKGVRIPPSGPSQRASESPAPPLHVPSVVLHKESEINFRVLPKGVRIPPSGPSRRFS 121
            ILPKGVRIPPSGPS+R S+ P P  +  S+   KES I + +LPKGVRIPPSGPS+R S
Sbjct: 119 GILPKGVRIPPSGPSRRTSDPPPPLSNFHSI---KESRIKYGILPKGVRIPPSGPSKRNS 178

Query: 122 DYPPPPP---HAPSVV 135
           DY PPPP   HAPS++
Sbjct: 179 DYYPPPPMHLHAPSII 190

BLAST of HG10007480 vs. ExPASy TrEMBL
Match: A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 10  RVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGINFRILPKGVR 69
           R P  +L F +  L      P S  S+RTSD PPPPP ASSIIL+K S IN  +LP+GV 
Sbjct: 233 RTPSPSLVFGM--LPKGVPIPPSRPSQRTSDYPPPPPRASSIILNKHSKINLGMLPRGVP 292

Query: 70  IPPSGPSQRASESPAPPLHVPSVVLHKESEINFRVLPKGVRIPPSGPSRRFSDYPPPPPH 129
           IPPSGPSQR S+ P PP H  SV+L+K+S+INF +LPKGV IPPSGPS+R S YPPPPP 
Sbjct: 293 IPPSGPSQRTSDYPPPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQRTSXYPPPPPR 352

Query: 130 APSVVLQNR 139
           A SV+L  +
Sbjct: 353 ASSVILNKQ 359

BLAST of HG10007480 vs. ExPASy TrEMBL
Match: A0A5D3BP86 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00050 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.6e-30
Identity = 77/134 (57.46%), Postives = 92/134 (68.66%), Query Frame = 0

Query: 1   MHFSLWKPKRVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGIN 60
           +HFSL K K  P+    F   I S + R P SG S+R+SD+PP P    S+IL K+S IN
Sbjct: 58  IHFSLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSDSPPSP----SMILPKESRIN 117

Query: 61  FRILPKGVRIPPSGPSQRASESPAPPLHVPSVVLHKESEINFRVLPKGVRIPPSGPSRRF 120
           F ILPKG RIPPSGPSQR S+SP P    PS  LHK S + F +LPKG  IPPSGPS+R 
Sbjct: 118 FGILPKGSRIPPSGPSQRFSDSPLP----PSTFLHKGSNMIFGMLPKGHHIPPSGPSKRT 177

Query: 121 SDYPPPPPHAPSVV 135
           SD PPPPPH+PS++
Sbjct: 178 SDNPPPPPHSPSLI 183

BLAST of HG10007480 vs. ExPASy TrEMBL
Match: A0A5A7T8R0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001740 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.4e-19
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 1   MHFSLWKPKRVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGIN 60
           + FS  KPKRVPDLA PFSL IL  + RTP  G S+RT DNP PPPHA  IILHK+S I 
Sbjct: 161 IRFSWPKPKRVPDLAPPFSLGILLKDVRTPPFGSSQRTLDNPSPPPHAVPIILHKKSKIK 220

Query: 61  FRILPKGVRIPPSGPSQR 79
           F ILPKGVR+PPSGPS R
Sbjct: 221 FGILPKGVRVPPSGPSVR 238

BLAST of HG10007480 vs. ExPASy TrEMBL
Match: A0A5D3BVE5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00110 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 1   MHFSLWKPKRVPDLALPFSLEILSNEERTPLSGRSKRTSDNPPPPPHASSIILHKQSGIN 60
           + FS  KPKRVPDLA PFSL ILS + RTP SG S+RT DNP  PPH   IILHK+S I 
Sbjct: 154 IRFSWPKPKRVPDLAPPFSLGILSKDVRTPPSGSSQRTLDNPSLPPHVVPIILHKKSRIE 213

Query: 61  FRILPKGVRIPPSGPSQR 79
           F ILPKGV +P SGPS R
Sbjct: 214 FGILPKGVHVPSSGPSVR 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882352.18.0e-4670.90uncharacterized protein LOC120073615 [Benincasa hispida][more]
KAA0040932.13.7e-3563.24proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK1060... [more]
KAG6603169.17.8e-3369.09hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022967687.14.3e-3159.69actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima][more]
KAA0043502.11.4e-2957.46proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK0113... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CGG11.8e-3563.24Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1HRH72.1e-3159.69actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3... [more]
A0A5D3BP866.6e-3057.46Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5A7T8R02.4e-1969.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BVE51.3e-1766.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..131
NoneNo IPR availablePANTHERPTHR33599:SF13FORMIN-LIKE PROTEIN 20coord: 16..88
NoneNo IPR availablePANTHERPTHR33599:SF13FORMIN-LIKE PROTEIN 20coord: 55..126
IPR039639Protein IDA-likePANTHERPTHR33599PROTEIN IDA-LIKE 5coord: 16..88
IPR039639Protein IDA-likePANTHERPTHR33599PROTEIN IDA-LIKE 5coord: 55..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007480.1HG10007480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010227 floral organ abscission