HG10007405 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007405
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionzf-RVT domain-containing protein
LocationChr10: 4601373 .. 4602250 (-)
RNA-Seq ExpressionHG10007405
SyntenyHG10007405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAACCTTGAGAAACAGGATTTAGATGTAGTTCTTGTTTGTCCAGTTTGCAGGAGGAAGGATGTAACAGTGCCTCATGCATTGTTTGAATGTTTCAGAGCTAAAGAAGTTTGGTCGAATACTGTTTCTAACAGCTGGTTTTCTGAACTAAGGCACAATGATAACTTAGATTTTTGCATGGTGTTGGCAGGGAGATTAAATGACTTGGAGCTTGTATGGGTTTGCATTACCGCTTGGGCTATTTGGGGAGATAGGAATAAGTTCTATAAAAAGGAAAATATACCTTTTGTGGAGCACCATGGTGGGCTTTGGTGGTAATTGGGCCTTCCACCGGGTCTATGTTGGCTTCTGTAATAACCAGAGATTAGGAGGGGGACATAAATGAACCGTGAACACATCTGAATGAGAGGGATCTTGAGGACATGAAAGTATAGTTAAGAAAGGCTTAAAAGAATTGAAAGTTACTACCTATACTAACAAAGTACACCTTCCTTTTTGGTGGCTCAATCATAAGTACTTCAAAGTTAAACATGCTTAGATTGGGTCAATACTATGTTGGGTGACCTCCTGAGAATTTTTCTAGGATGCATGTGCACTTTTAGAAGCATTCAAGACAAGCAAAGTTGATGTAGCTAAGTCGCAGGGCCATCAAGTTCTGAATCCTTATCTTTTTAAGCCCGACGGATGCTGAAGCTTTGACTATTTATAAGGGTCTTCAGTTGGCTGTTAGAATGGAGCTATCTCAAATTCTGGTTTTATTTGATTCCTTGGGAATTATTCAGATGCTCATGGGCAATGCGGTGATCCAGGTGGAATCGACAAATTATATGGCTGATATTAAGGAAATAAAGAAAAAATATATATACATTTCATAA

mRNA sequence

ATGGGGAACCTTGAGAAACAGGATTTAGATGTAGTTCTTGTTTGTCCAGTTTGCAGGAGGAAGGATGTAACAGTGCCTCATGCATTGTTTGAATGTTTCAGAGCTAAAGAAGTTTGGTCGAATACTGTTTCTAACAGCTGGTTTTCTGAACTAAGGCACAATGATAACTTAGATTTTTGCATGGTGTTGGCAGGGAGATTAAATGACTTGGAGCTTGTATGGGTTTGCATTACCGCTTGGGCTATTTGGGGAGATAGGAATAAGTTCTATAAAAAGGAAAATATACCTTTTGTGGAGCACCATGGTGGGCTTTGGTGCCCGACGGATGCTGAAGCTTTGACTATTTATAAGGGTCTTCAGTTGGCTGTTAGAATGGAGCTATCTCAAATTCTGGTTTTATTTGATTCCTTGGGAATTATTCAGATGCTCATGGGCAATGCGGTGATCCAGGTGGAATCGACAAATTATATGGCTGATATTAAGGAAATAAAGAAAAAATATATATACATTTCATAA

Coding sequence (CDS)

ATGGGGAACCTTGAGAAACAGGATTTAGATGTAGTTCTTGTTTGTCCAGTTTGCAGGAGGAAGGATGTAACAGTGCCTCATGCATTGTTTGAATGTTTCAGAGCTAAAGAAGTTTGGTCGAATACTGTTTCTAACAGCTGGTTTTCTGAACTAAGGCACAATGATAACTTAGATTTTTGCATGGTGTTGGCAGGGAGATTAAATGACTTGGAGCTTGTATGGGTTTGCATTACCGCTTGGGCTATTTGGGGAGATAGGAATAAGTTCTATAAAAAGGAAAATATACCTTTTGTGGAGCACCATGGTGGGCTTTGGTGCCCGACGGATGCTGAAGCTTTGACTATTTATAAGGGTCTTCAGTTGGCTGTTAGAATGGAGCTATCTCAAATTCTGGTTTTATTTGATTCCTTGGGAATTATTCAGATGCTCATGGGCAATGCGGTGATCCAGGTGGAATCGACAAATTATATGGCTGATATTAAGGAAATAAAGAAAAAATATATATACATTTCATAA

Protein sequence

MGNLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENIPFVEHHGGLWCPTDAEALTIYKGLQLAVRMELSQILVLFDSLGIIQMLMGNAVIQVESTNYMADIKEIKKKYIYIS
Homology
BLAST of HG10007405 vs. NCBI nr
Match: XP_030498122.1 (uncharacterized protein LOC115713779 [Cannabis sativa])

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-06
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 15   CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVW 74
            CP+C+ +  T+PHALF C RAKEVW  +  N  F     +   +F + ++G  + LE   
Sbjct: 1093 CPLCKLQQETIPHALFLCSRAKEVWKISNLNLNFKLAASSSAEEFLLYVSGHTSTLEFEQ 1152

Query: 75   VCITAWAIWGDRN-KFYKK 93
                 W+IW +RN +F+ K
Sbjct: 1153 FLTLCWSIWFERNAEFHDK 1171

BLAST of HG10007405 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-06
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 1   MGNLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNL-DF 60
           M NL K+ +D    C VC ++  T  HALF+C RAKEVW N +    F +   N+++ D 
Sbjct: 14  MRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVW-NILLPQAFPQCDFNNSVQDG 73

Query: 61  CMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENIP 97
            + L   L+  +   V +  WAIW DRN    +  IP
Sbjct: 74  LLYLVESLSTPDFDLVGVGVWAIWNDRNAIRMQRQIP 109

BLAST of HG10007405 vs. NCBI nr
Match: XP_030502555.1 (uncharacterized protein LOC115717715 [Cannabis sativa])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-05
Identity = 31/87 (35.63%), Postives = 43/87 (49.43%), Query Frame = 0

Query: 3    NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMV 62
            NL  + +     C +C R   ++ HALF C  AK VW NT     F +  +  + D+ M 
Sbjct: 1081 NLFHRKVITSATCSLCSRVWESIGHALFSCCHAKAVWQNTGFQLDFQKASYMKDGDYLMF 1140

Query: 63   LAGRLNDLELVWVCITAWAIWGDRNKF 90
            L+  L + EL  +  T W IW DRN F
Sbjct: 1141 LSTILTNSELERLFCTMWFIWSDRNNF 1167

BLAST of HG10007405 vs. NCBI nr
Match: TXG60858.1 (hypothetical protein EZV62_012221 [Acer yangbiense])

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 0

Query: 15  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVW 74
           C  C +K   V HALF C  A++VW+++   S+    R++   D  + +AG  N  EL  
Sbjct: 26  CTRCGKKWEFVEHALFGCKAARQVWADSSFCSFIYNRRNHHLQDVLLSMAGLFNPDELGQ 85

Query: 75  VCITAWAIWGDRNKF 90
            C+  WA+W DRN F
Sbjct: 86  ACMLIWAVWEDRNSF 100

BLAST of HG10007405 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-05
Identity = 26/81 (32.10%), Postives = 41/81 (50.62%), Query Frame = 0

Query: 15   CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVW 74
            C +C   + TV HALF C RAK VW  +  +  F  +  +   D  ++L+  L+  EL  
Sbjct: 1093 CTICNSCEETVHHALFSCPRAKAVWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELEL 1152

Query: 75   VCITAWAIWGDRNKFYKKENI 96
              +  W+IW +RN  Y   ++
Sbjct: 1153 FLVLCWSIWHERNAIYHGNSV 1173

BLAST of HG10007405 vs. ExPASy TrEMBL
Match: A0A7N2L6E8 (zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-07
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 3   NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMV 62
           NL K+ + V   C +C +K  T  H L+EC  A+ VWS  +SN    + R N+ +DF ++
Sbjct: 149 NLLKRRVKVEAKCEICCQKPETASHVLWECAFARNVWS--LSNGRTQKCR-NEAIDFFLL 208

Query: 63  ---LAGRLNDLELVWVCITAWAIWGDRNKFY 91
              +  +L+ LEL     TAWAIW  RN+FY
Sbjct: 209 FEQMRRKLDQLELERWATTAWAIWNARNRFY 236

BLAST of HG10007405 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 1   MGNLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNL-DF 60
           M NL K+ +D    C VC ++  T  HALF+C RAKEVW N +    F +   N+++ D 
Sbjct: 14  MRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVW-NILLPQAFPQCDFNNSVQDG 73

Query: 61  CMVLAGRLNDLELVWVCITAWAIWGDRNKFYKKENIP 97
            + L   L+  +   V +  WAIW DRN    +  IP
Sbjct: 74  LLYLVESLSTPDFDLVGVGVWAIWNDRNAIRMQRQIP 109

BLAST of HG10007405 vs. ExPASy TrEMBL
Match: A0A803PKJ2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 32/87 (36.78%), Postives = 43/87 (49.43%), Query Frame = 0

Query: 3   NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMV 62
           NL  Q +     C +C R   ++ HALF C  AK VW NT  +  F +  +  + D+ M 
Sbjct: 578 NLFHQKVITSATCSLCSRAWESIGHALFSCCHAKAVWQNTSFHLDFQKASYMKDGDYLMF 637

Query: 63  LAGRLNDLELVWVCITAWAIWGDRNKF 90
           L+  L   EL  +  T W IW DRN F
Sbjct: 638 LSTILTKSELERLFCTMWFIWSDRNNF 664

BLAST of HG10007405 vs. ExPASy TrEMBL
Match: A0A803PF68 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 15  CPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMVLAGRLNDLELVW 74
           CP+C+ +  T+PHALF C RAKEVW  +  N  F     +   +F + ++G  + LE   
Sbjct: 166 CPLCKLQQETIPHALFLCSRAKEVWKISNLNLNFKLAASSSAEEFLLYVSGHTSTLEFEQ 225

Query: 75  VCITAWAIWGDRN-KFYKK 93
                W+IW +RN +F+ K
Sbjct: 226 FLTLCWSIWFERNAEFHDK 244

BLAST of HG10007405 vs. ExPASy TrEMBL
Match: A0A7N2LT45 (zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 30/91 (32.97%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 3   NLEKQDLDVVLVCPVCRRKDVTVPHALFECFRAKEVWSNTVSNSWFSELRHNDNLDFCMV 62
           NL+++ + +   C +C +   T  H L+EC  A+++WS        S    +D       
Sbjct: 57  NLQRRKVQIDPKCEICLQHPETTCHVLWECPFARDIWSVAGRRIQKSPTGTSDFFSLFRS 116

Query: 63  LAGRLNDLELVWVCITAWAIWGDRNKFYKKE 94
           +A RL+  EL    +  WAIWG RNKFY K+
Sbjct: 117 MANRLSKQELESWAMVVWAIWGARNKFYFKK 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030498122.15.8e-0636.71uncharacterized protein LOC115713779 [Cannabis sativa][more]
XP_022145060.15.8e-0637.11uncharacterized protein LOC111014578 [Momordica charantia][more]
XP_030502555.12.2e-0535.63uncharacterized protein LOC115717715 [Cannabis sativa][more]
TXG60858.13.7e-0537.33hypothetical protein EZV62_012221 [Acer yangbiense][more]
XP_030508852.14.9e-0532.10uncharacterized protein LOC115723496 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7N2L6E89.6e-0739.56zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6J1CTE32.8e-0637.11uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A803PKJ22.8e-0636.78Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PF682.8e-0636.71Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7N2LT451.1e-0532.97zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 103..167
e-value: 3.5E-6
score: 26.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007405.1HG10007405.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity