HG10007354 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007354
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	arabinogalactan peptide 13-like
Location	Chr10: 4073468 .. 4073647 (+)
RNA-Seq Expression	HG10007354
Synteny	HG10007354

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAATGAAGTTTGAAGCTTTGATGATGATAATGGTGGTTGTTTTAATGGGTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTACTTCTGATGCTCCAATTTCTCTTCCAACTTTAATGACTTCTCTTGCTCCTCTTGTTCTTGGATTCTTCCTTTAA

mRNA sequence

ATGGAAGCAATGAAGTTTGAAGCTTTGATGATGATAATGGTGGTTGTTTTAATGGGTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTACTTCTGATGCTCCAATTTCTCTTCCAACTTTAATGACTTCTCTTGCTCCTCTTGTTCTTGGATTCTTCCTTTAA

Coding sequence (CDS)

ATGGAAGCAATGAAGTTTGAAGCTTTGATGATGATAATGGTGGTTGTTTTAATGGGTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTACTTCTGATGCTCCAATTTCTCTTCCAACTTTAATGACTTCTCTTGCTCCTCTTGTTCTTGGATTCTTCCTTTAA

Protein sequence

MEAMKFEALMMIMVVVLMGFSSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFFL

Homology

[Close]

BLAST of HG10007354 vs. NCBI nr
Match: KAG7022018.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFFL 60
          M AMKFEALM+ MVV +M FSSSIVAAQEAPAPSP SDAP+SLPTLM SLAPLVL FFL
Sbjct: 1  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL 59

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BLAST of HG10007354 vs. NCBI nr
Match: XP_038879727.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-13
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MEAMKFEAL-MMIMVVVLMGF-SSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFF 60
          MEAMK +AL MMIMVVVLM F SSSIVAAQEAPAPSP SDAPISLPTLM SLAPLVLGFF
Sbjct: 1  MEAMKSQALMMMIMVVVLMAFSSSSIVAAQEAPAPSPASDAPISLPTLMASLAPLVLGFF 60

[Close]

BLAST of HG10007354 vs. NCBI nr
Match: XP_022988237.1 (arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 6.4e-13
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFFL 60
          MEAMKF+ALM+ MVV  M  SS+IVAAQEAPAPSP SDAP+SLPTLM SLAPL LGFFL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPLALGFFL 59

[Close]

BLAST of HG10007354 vs. NCBI nr
Match: KAG7023913.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-12
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFFL 60
          MEAMKF+ALM+ MVV  M  SS+IVAAQEAPAPSP SDA +SLPTLM SLAPL LGFFL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL 59

[Close]

BLAST of HG10007354 vs. NCBI nr
Match: XP_011660059.1 (arabinogalactan protein 13 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 3  AMKFEALMM-IMVVVLMGFSSS--IVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFF 59
          A +F+ LM+ +MVVVL+  SSS  IVAAQEAPAPSP SDA +S+PTLM S  PLV GFF
Sbjct: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF 63

[Close]

BLAST of HG10007354 vs. ExPASy Swiss-Prot
Match: Q9C8A4 (Arabinogalactan protein 21 OS=Arabidopsis thaliana OX=3702 GN=AGP21 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-04
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGF 58
          MEAMK + ++ IMVV  + FS++  A  EAPAPSPTSDA + +P L  S+  L  GF
Sbjct: 1  MEAMKMKMMVFIMVVA-VAFSAATAATVEAPAPSPTSDAAMFVPALFASVVALASGF 56

[Close]

BLAST of HG10007354 vs. ExPASy Swiss-Prot
Match: Q9LVC0 (Arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=AGP14 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 5.6e-04
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSS--SIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFF 59
          MEAMK + L ++++V ++ FS+    VAA +APAPSPTSDA   +PT   S+A +  GFF
Sbjct: 1  MEAMKMK-LYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFF 59

[Close]

BLAST of HG10007354 vs. ExPASy Swiss-Prot
Match: Q9LJD9 (Arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=AGP12 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.3e-04
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQ-EAPAPSPTSDAPISLPTLMTSLAPLVLGF 58
          ME+MK + ++++MV ++   +   VAAQ EAPAPSPTSDA + +P L  S+A L  GF
Sbjct: 1  MESMKMKLIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGF 58

[Close]

BLAST of HG10007354 vs. ExPASy TrEMBL
Match: A0A6J1JCI6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFFL 60
          MEAMKF+ALM+ MVV  M  SS+IVAAQEAPAPSP SDAP+SLPTLM SLAPL LGFFL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPLALGFFL 59

[Close]

BLAST of HG10007354 vs. ExPASy TrEMBL
Match: A0A0A0LWU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 3  AMKFEALMM-IMVVVLMGFSSS--IVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFF 59
          A +F+ LM+ +MVVVL+  SSS  IVAAQEAPAPSP SDA +S+PTLM S  PLV GFF
Sbjct: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF 63

[Close]

BLAST of HG10007354 vs. TAIR 10
Match: AT1G55330.1 (arabinogalactan protein 21 )

HSP 1 Score: 46.6 bits (109), Expect = 8.0e-06
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGF 58
          MEAMK + ++ IMVV  + FS++  A  EAPAPSPTSDA + +P L  S+  L  GF
Sbjct: 1  MEAMKMKMMVFIMVVA-VAFSAATAATVEAPAPSPTSDAAMFVPALFASVVALASGF 56

[Close]

BLAST of HG10007354 vs. TAIR 10
Match: AT5G56540.1 (arabinogalactan protein 14 )

HSP 1 Score: 44.3 bits (103), Expect = 4.0e-05
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSS--SIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGFF 59
          MEAMK + L ++++V ++ FS+    VAA +APAPSPTSDA   +PT   S+A +  GFF
Sbjct: 1  MEAMKMK-LYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFF 59

[Close]

BLAST of HG10007354 vs. TAIR 10
Match: AT3G13520.1 (arabinogalactan protein 12 )

HSP 1 Score: 43.9 bits (102), Expect = 5.2e-05
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQ-EAPAPSPTSDAPISLPTLMTSLAPLVLGF 58
          ME+MK + ++++MV ++   +   VAAQ EAPAPSPTSDA + +P L  S+A L  GF
Sbjct: 1  MESMKMKLIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGF 58

[Close]

BLAST of HG10007354 vs. TAIR 10
Match: AT4G26320.1 (arabinogalactan protein 13 )

HSP 1 Score: 43.1 bits (100), Expect = 8.9e-05
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 1  MEAMKFEALMMIMVVVLMGFSSSIVAAQEAPAPSPTSDAPISLPTLMTSLAPLVLGF 58
          MEAMK    + ++V  +   +    AA EAPAPSPTSDA +++P    S+A L  GF
Sbjct: 1  MEAMKMRLFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGF 57

The following BLAST results are available for this feature:

BLAST of HG10007354 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022018.1	1.3e-13	83.05	Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038879727.1	2.9e-13	88.52	arabinogalactan protein 13-like [Benincasa hispida]	[more]
XP_022988237.1	6.4e-13	79.66	arabinogalactan peptide 13-like [Cucurbita maxima]	[more]
KAG7023913.1	5.4e-12	77.97	Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_011660059.1	1.5e-06	66.10	arabinogalactan protein 13 [Cucumis sativus]	[more]

BLAST of HG10007354 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8A4	1.1e-04	50.88	Arabinogalactan protein 21 OS=Arabidopsis thaliana OX=3702 GN=AGP21 PE=1 SV=1	[more]
Q9LVC0	5.6e-04	48.33	Arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=AGP14 PE=1 SV=1	[more]
Q9LJD9	7.3e-04	48.28	Arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=AGP12 PE=1 SV=1	[more]

BLAST of HG10007354 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JCI6	3.1e-13	79.66	arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3...	[more]
A0A0A0LWU9	7.4e-07	66.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1	[more]

BLAST of HG10007354 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55330.1	8.0e-06	50.88	arabinogalactan protein 21	[more]
AT5G56540.1	4.0e-05	48.33	arabinogalactan protein 14	[more]
AT3G13520.1	5.2e-05	48.28	arabinogalactan protein 12	[more]
AT4G26320.1	8.9e-05	43.86	arabinogalactan protein 13	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34114:SF18	ARABINOGALACTAN PEPTIDE 13-LIKE	coord: 1..59
IPR039281	Arabinogalactan protein 3/12/13/14/21	PANTHER	PTHR34114	ARABINOGALACTAN PEPTIDE 1	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007354.1	HG10007354.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane