HG10007353 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007353
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	Chr10: 4070573 .. 4071025 (+)
RNA-Seq Expression	HG10007353
Synteny	HG10007353

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAGAACGTGACTGAATTGGTCTCGGTCACTCTTCGAGATGGAATGGAAGAAGAGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAATGAGGAGCCGTATGAGGTGAAAATCTCACGTACGATTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACTATCACCCCAAAAAACTCAAATTTTGCCTTACGTAAAGTTGTCAGAGTATGCTTAATCTCGAGATTTAAAATCATTGCTTATATACCTAGTATTAGCCATAATTTACAAGAATATTATGTCGTCTTAGTAAGAAAGGGAAGGGTTAAGGATTTACCCGGTGTGATTTTGAAATTTTATAGCAAAACTTGTAAAACAAAAAAAAATCAATCTCAATCACTAACCAATTTTTTTTCTTTTTTTTTTAAATGCCTTTTGGGTTGA

mRNA sequence

ATGAATGAGAACGTGACTGAATTGGTCTCGGTCACTCTTCGAGATGGAATGGAAGAAGAGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAATGAGGAGCCGTATGAGGTGAAAATCTCACGTACGATTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACTATCACCCCAAAAAACTCAAATTTTGCCTTACGTAAAGTTGTCAGAGTATGCTTAATCTCGAGATTTAAAATCATTGCTTATATACCTAGTATTAGCCATAATTTACAAGAATATTATGTCGTCTTAGTAAGAAAGGGAAGGGTTAAGGATTTACCCGGTGTGATTTTGAAATTTTATAGCAAAACTTGTAAAACAAAAAAAAATCAATCTCAATCACTAACCAATTTTTTTTCTTTTTTTTTTAAATGCCTTTTGGGTTGA

Coding sequence (CDS)

ATGAATGAGAACGTGACTGAATTGGTCTCGGTCACTCTTCGAGATGGAATGGAAGAAGAGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAATGAGGAGCCGTATGAGGTGAAAATCTCACGTACGATTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACTATCACCCCAAAAAACTCAAATTTTGCCTTACGTAAAGTTGTCAGAGTATGCTTAATCTCGAGATTTAAAATCATTGCTTATATACCTAGTATTAGCCATAATTTACAAGAATATTATGTCGTCTTAGTAAGAAAGGGAAGGGTTAAGGATTTACCCGGTGTGATTTTGAAATTTTATAGCAAAACTTGTAAAACAAAAAAAAATCAATCTCAATCACTAACCAATTTTTTTTCTTTTTTTTTTAAATGCCTTTTGGGTTGA

Protein sequence

MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGVILKFYSKTCKTKKNQSQSLTNFFSFFFKCLLG

Homology

[Close]

BLAST of HG10007353 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 189.9 bits (481), Expect = 1.6e-44
Identity = 101/118 (85.59%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSV 60
           MNENVT+LV VTLRDGMEE RRFSNEEKDPMTSKELNEEPYEVKISRT+LSSGSKGDLSV
Sbjct: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61  NFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           NFSTITPKN N ALRKV RV L S F+IIAYIP I HNLQE+  VLVR GRVKDLPGV
Sbjct: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGV 118

[Close]

BLAST of HG10007353 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 186.0 bits (471), Expect = 2.3e-43
Identity = 99/118 (83.90%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSV 60
           MNENVTELV VTLRDGMEE RRFSNEEKDPMTSKELNEEPYEVKISRT+LSSGSKGDLS+
Sbjct: 1   MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61  NFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           NFSTITPK  N ALRKV RV L S F+I AYIP I HNLQEY+VVLVR  RVKDLP V
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLPNV 118

[Close]

BLAST of HG10007353 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.3 bits (469), Expect = 4.0e-43
Identity = 100/118 (84.75%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSV 60
           MNENVTELV VTLRDGMEE RRFSNEEKDPMTSKELNEEPYEVKIS T+LSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           NFSTITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGV 118

[Close]

BLAST of HG10007353 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-36
Identity = 92/117 (78.63%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 2   NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EE RRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           FSTITPK  N ALRKV RV L S F+I AYIP I HN QE+ VVLVR GRVKDLPGV
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGV 121

[Close]

BLAST of HG10007353 vs. NCBI nr
Match: KAF1876942.1 (hypothetical protein Lal_00033867 [Lupinus albus])

HSP 1 Score: 162.2 bits (409), Expect = 3.6e-36
Identity = 90/117 (76.92%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 2   NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EE  RFSNEEKDPMTSKELN+E YEVKIS ++L SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           FSTITPK  N ALRKV RV L S F+I AYIP I HNLQE++VVLVR G VKDLPGV
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVR-GGVKDLPGV 195

[Close]

BLAST of HG10007353 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-20
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 48  TILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLV 107
           T + SGSKGDLSVNFSTITPK  N ALRKV RV L S F+I AYIP I HN QE+ VVLV
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 108 RKGRVKDLPGV 119
           R GRVKDLPGV
Sbjct: 95  RGGRVKDLPGV 105

[Close]

BLAST of HG10007353 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 55  KGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKD 114
           +G  +  +STITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 115 LPGV 119
           LPGV
Sbjct: 91  LPGV 94

[Close]

BLAST of HG10007353 vs. ExPASy Swiss-Prot
Match: Q1KVX0 (30S ribosomal protein S12, chloroplastic OS=Tetradesmus obliquus OX=3088 GN=rps12 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-14
Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 51  SSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKG 110
           S   +  + +   T+TPK  N ALRKV RV L S F++ AYIP I HNLQE+ VVLVR G
Sbjct: 26  SCAQRRGICLRVYTVTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHAVVLVRGG 85

Query: 111 RVKDLPGVILKFYSKTCKTK--KNQSQSLTNF 141
           RVKDLPGV       T  T   KN+ QS + +
Sbjct: 86  RVKDLPGVRYHIVRGTLDTAGVKNRVQSRSKY 117

[Close]

BLAST of HG10007353 vs. ExPASy Swiss-Prot
Match: Q5WLR7 (30S ribosomal protein S12 OS=Bacillus clausii (strain KSM-K16) OX=66692 GN=rpsL PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-14
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 33  SKELNEEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYI 92
           S  LN+     K S+T +SS  K  +     T+TPK  N ALRK  RV L ++ ++ AYI
Sbjct: 21  SPALNKGYNSFKKSQTDVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNQIEVTAYI 80

Query: 93  PSISHNLQEYYVVLVRKGRVKDLPGV 119
           P I HNLQE+ VVL+R GRVKDLPGV
Sbjct: 81  PGIGHNLQEHSVVLIRGGRVKDLPGV 106

[Close]

BLAST of HG10007353 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 64  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           TITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGV 93

[Close]

BLAST of HG10007353 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43
Identity = 100/118 (84.75%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MNENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSV 60
           MNENVTELV VTLRDGMEE RRFSNEEKDPMTSKELNEEPYEVKIS T+LSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           NFSTITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGV 118

[Close]

BLAST of HG10007353 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 7.8e-37
Identity = 92/117 (78.63%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 2   NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EE RRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           FSTITPK  N ALRKV RV L S F+I AYIP I HN QE+ VVLVR GRVKDLPGV
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGV 121

[Close]

BLAST of HG10007353 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.7e-36
Identity = 90/117 (76.92%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 2   NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EE  RFSNEEKDPMTSKELN+E YEVKIS ++L SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           FSTITPK  N ALRKV RV L S F+I AYIP I HNLQE++VVLVR G VKDLPGV
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVR-GGVKDLPGV 195

[Close]

BLAST of HG10007353 vs. ExPASy TrEMBL
Match: A0A443Q5I9 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02780500 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.7e-34
Identity = 87/117 (74.36%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 2   NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EE RRFSNEEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           FSTITPK  N ALRKV RV L S F+I AYIP I HN QE+ VVLVR GRVKDLPGV
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGV 115

[Close]

BLAST of HG10007353 vs. ExPASy TrEMBL
Match: A0A443Q5G0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02772100 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.2e-33
Identity = 88/117 (75.21%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 2   NENVTELVSVTLRDGMEEERRFSNEEKDPMTSKELNEEPYEVKISRTILSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EE RRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           FSTITPK  N ALRKV RV L S F+I AYIP I HN QE+ VVL RK   +DLPGV
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLRRK---EDLPGV 118

[Close]

BLAST of HG10007353 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-15
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 64  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           TITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGV 93

[Close]

BLAST of HG10007353 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-15
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 64  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           TITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGV 93

[Close]

BLAST of HG10007353 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-15
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 64  TITPKNSNFALRKVVRVCLISRFKIIAYIPSISHNLQEYYVVLVRKGRVKDLPGV 119
           TITPK  N ALRKV RV L S F+I AYIP I HNLQE+ VVLVR GRVKDLPGV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGV 93

[Close]

BLAST of HG10007353 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-09
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 38  EEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISH 97
           EE      +R +     K  +    ST TPK  N A RK+ +V L +R  I A+IP   H
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEYYVVLVRKGRVKDLPGV 119
           N QE+  VL+R GRVKD PGV
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGV 93

[Close]

BLAST of HG10007353 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-09
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 38  EEPYEVKISRTILSSGSKGDLSVNFSTITPKNSNFALRKVVRVCLISRFKIIAYIPSISH 97
           EE      +R +     K  +    ST TPK  N A RK+ +V L +R  I A+IP   H
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEYYVVLVRKGRVKDLPGV 119
           N QE+  VL+R GRVKD PGV
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGV 93

The following BLAST results are available for this feature:

BLAST of HG10007353 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896566.1	1.6e-44	85.59	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038902483.1	2.3e-43	83.90	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_022932068.1	4.0e-43	84.75	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
RWR98012.1	1.6e-36	78.63	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]
KAF1876942.1	3.6e-36	76.92	hypothetical protein Lal_00033867 [Lupinus albus]	[more]

BLAST of HG10007353 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	8.3e-20	74.65	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	1.4e-14	67.19	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q1KVX0	6.8e-14	50.00	30S ribosomal protein S12, chloroplastic OS=Tetradesmus obliquus OX=3088 GN=rps1...	[more]
Q5WLR7	8.9e-14	51.16	30S ribosomal protein S12 OS=Bacillus clausii (strain KSM-K16) OX=66692 GN=rpsL ...	[more]
A4QJV5	1.2e-13	74.55	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]

BLAST of HG10007353 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	1.9e-43	84.75	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A3S3NSS0	7.8e-37	78.63	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A6A5N1Q8	1.7e-36	76.92	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A443Q5I9	4.7e-34	74.36	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A443Q5G0	5.2e-33	75.21	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]

BLAST of HG10007353 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	8.3e-15	74.55	ribosomal protein S12A	[more]
ATCG01230.1	8.3e-15	74.55	ribosomal protein S12B	[more]
ATCG00905.1	8.3e-15	74.55	ribosomal protein S12C	[more]
AT2G07675.1	3.0e-09	43.21	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	3.0e-09	43.21	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 149..150
None	No IPR available	GENE3D	2.40.50.140		coord: 10..140 e-value: 2.2E-24 score: 87.5
None	No IPR available	PANTHER	PTHR11652:SF51	S12-LIKE, 30S RIBOSOMAL PROTEIN S12 SUBFAMILY PROTEIN	coord: 52..121
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 83..102 score: 50.28 coord: 67..82 score: 61.37 coord: 102..119 score: 69.14
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 58..127 e-value: 1.1E-15 score: 57.3
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 52..121
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 60..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007353.1	HG10007353.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome