HG10007338 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007338
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	TATA-box-binding protein
Location	Chr10: 3870765 .. 3874281 (+)
RNA-Seq Expression	HG10007338
Synteny	HG10007338

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAGCGTTTTGCTGCTGTTATTATGAGAATAAGGGAGCCAAAAACTACAGCATTGATATTTGCATCGGGAAAGATGGTAAGTTATTTTCTATCTAATTTGCCCACATTGCAGTTGCTTCCAGTTGTTTTCTATCTTGTTGCTCACTGTTCGTTTTGCTACTAGCACAGTACATTTTTATATGTTAAAGTTTTATAAATTTTGAAGTGTTAAATATATTAATATACACATATATTGTCAAAAAATTTGTTTCCTCAATGTGTCCATATCCTACTATTTTAGAACTTGATGTGTTATCACATTTGTGTCCATGCTTCATAGATTGTCATGTATTTGTACTGTAACCTCTGTTGGTTCAAATTCAAAAAAGGTAAATGAACCAACAAGAAAGATACATGGGGTGTACCGATTAATGTTGATGGCTTAATGAGGCAGGAGGAAAATTGCTAATTTGATTAGGGGCATAATCCTGTTCCGTATCTCTGTGAACCCATGTCATGATTATATTTTATTATATAATTCAATAACCTCAAAACCATGTGTTATTAAGAAAATATGACATTATGATCGAAGGTCAAAGAATCATATCTCATCACCCATATGGAGTTGTACTAAAGCCAAAAAAAAAAAAAGGAAAATCCTCAAACCAATATTTATAATTTATTCAGTCAATCTTCTTTTCATGGACCCATATTAAACAGGTACGTTGTTCAAATAATTCCCCTAAGAATGCATTGGAACTTGATGAAATTTGTTTGAATTGAATTTAAGTTGAGTGAGAATTTCTGTGTCCTTAATGTGCCACTATGTTATATGGATGCTTTTTGTCTTCCTTGTAAACTGGTTGCTGCACTTGAATAGTATCTTGTTTTAGCTATTCAGATGTATGATGTGGTGTAGGTCTGTACTGGAGCTAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGGTATTTACTTTCTTTCCATTGTTCTGCCTTAGTGTGTAGAGGTTGTCAAATCCTCTCTCTAGACATTGGCTGTTGCATGTTAGAATATCAATGATAGAATCCCACAGCTTGAGATCTACTCGATTTTATCTTAAAACTGTTATCATTTGATTCATTAATTTTTCAAAGGTCTGACTAGTTGTGTCATGCCCCAATAAGTGACTTAATTTGAATTCTAAAGCTTAAATCTTACAGATTTCATTTTATAAGTGTTCCAGAAAACTAGAGGTATGAGCTGAGATATGGTTGTTAGGTATTATGTGTTGAGAATAGTTGATAGTTGAAACTTGAAAGTAATGTTTACTTTGCATCTTGTTGTAAGAAAATGTATGTACGAATATTTATTTACATATTCAAGCGTTAATGTATCATCTGAGATTAAATCGTCACAGGGGAGCCACTAATCAAGATCTTGTTGATGCTCAGTTTATTGATTTTCTTATTATTCTAAAAACTGTTGGGTATTTCATTTAACAGTACCCTTCCTTTTAATATGAAGCTTATCAAAAATATAATATGAATTATTTATCTGATATTTTACCTTGTTTCTACTTTCCAGTATGCCCGTATTATCCAAAAACTTGGTTTTCCTGCCAAGTTTAAGGTATGTGCTTCTATTTCCCTTCATGTGTAGGGCACTGCAATTGCCACCAGAAGCTACTTTTAGATTTCCTTTTTTGTAAAAAAAAAGAAAAATGAAAACATCTTTCAGTAAGAATGAAAGAAAGAAGACAAAAGAGGGGAAAATAAGATATACACACAGTTTAAATTAAAAAACTTGATTCTTAAAACTAAAATTATGTATCACATTTTTTGGTACATACTGTTTCTGGCCAATTTTTTTCCCTTTCTTTTCTCATTTATTTAGTGTATGTTCTCATGCATTTTTAATCTGGTGCAGGATTTTAAGATTCAGAACATTGTTGGTTCGTGTGATGTTAAGTTTCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTGTAAGCTTTAGATCTATATCTTGGTCTCTATGTGTATTCTATGGGATCGCTTCTATGTCATTATTAAATTTGTCAGATTCTGGAGGTCCGCAAGTAGTCAAGCATTTTTCTGCTAGAAATCTCCATCTCTTCTGAATATTTTTCTTTTGGAGGAATGACTTGAATTTGTATGCATATGTTTGTGCTTGACTATGATTTTTCCAATTTTTTCAAGTGATTCTGTGTTATGGTTTTTTCATGGGGAACTAGTCCAACAATCACACAAGTTTGAGATGGTACTGAAGTTTGTGGTGTTTTCGTGATGTATGCTAGCGTTTACTAGTGATGAGTGGAATCCTGAGAGTTATTTTCGATGTTTAATGCACTTCATTGTACTTCATTGTAATTAACATTCACTATATATTTTATCTGGTTAAACATTTATTTTGATGTTCTTATCCAAAAAAACACATTTATTTTGAACTTCTTATATTGTAACGTAACTTCATTATTACAACTTCTATCTCCATTTTTTTCTCAGTACGAACCAGAGTTATTCCCTGGATTGATATATCGGATGAAACAACCAAAGATCGTGCTTCTCATTTTTGTCTCTGGAAAAATAGTTTTAACTGGGGCTAAGGTAAAACTTTGATTGCCATCTTTGTGTTTTGTCCGAAATATTATTTGAATGTCAAGGATATATTGGTAATTAGCCTAAATTTTGTTAGCCGGTGGTGGTATGAATAGAGAAGTAATGGAAGGTGAAGGCATAATGGTTTAGCTATTTTAGTTTGGGCTTGAGATTATTCAGTCGGGAGGTCTCCAAGTTTCTTGACTCGGATATTTTACTAGTAACTTACGCCGCCTGTAGGATATTAAATCTTAGGTAGGTGGCCACTATATTGGATTGAACCCATGACCCCTTAGTCCTTTGACCTTTTTTTTTGATGTTCCCACTACCACTAGGCCAACCCAGGATGGTTTTTCTGATTTTCAATCTAATGCATAATCATATGTCATCAATTATCAATGATTCAATTAGCAGTCAAAATGAGTCTAGTATGATTTAGGGTCACTTTTGACCAATCTTGAGATAACCCCTTAGAATAACATAATTACAATTACAAGATTGCATGCCCCTACATGCAGTGTTTTAAAAAGTCCTCCCAGGTGCGTGCCTGGGCGCTAGGTGTAGGTCAAGGGGATGCACACAAAAGAAAGCGCACATTAGGCATGTGAAGTTTAAAGCCCTAGACTTTGAGGCTTTTTCATTATGTAAAAATCATAATTATTATTAGGCTTACATGCGCATTACCAAAAAATCTGCATTTTCTGTTACGTCTTGCACTTAAGTCCCAAAAGACAATTGCGCTTCTATGAACGTTAAAAACACATGGCCTATCTGGATAGTTACTGTCACAGCTACAGTCATCTTTAATCTGAACATATTCTGTATCTTGAATCCTTCAGGTGAGAGAGGAGACATATACAGCATTTGAGAATATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGGTAA

mRNA sequence

ATGAAACAGCGTTTTGCTGCTGTTATTATGAGAATAAGGGAGCCAAAAACTACAGCATTGATATTTGCATCGGGAAAGATGGTCTGTACTGGAGCTAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGTATGCCCGTATTATCCAAAAACTTGGTTTTCCTGCCAAGTTTAAGGATTTTAAGATTCAGAACATTGTTGGTTCGTGTGATGTTAAGTTTCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTTACGAACCAGAGTTATTCCCTGGATTGATATATCGGATGAAACAACCAAAGATCGTGCTTCTCATTTTTGTCTCTGGAAAAATAGTTTTAACTGGGGCTAAGGTGAGAGAGGAGACATATACAGCATTTGAGAATATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGGTAA

Coding sequence (CDS)

ATGAAACAGCGTTTTGCTGCTGTTATTATGAGAATAAGGGAGCCAAAAACTACAGCATTGATATTTGCATCGGGAAAGATGGTCTGTACTGGAGCTAAGAGTGAACAACAATCCAAATTAGCTGCAAGAAAGTATGCCCGTATTATCCAAAAACTTGGTTTTCCTGCCAAGTTTAAGGATTTTAAGATTCAGAACATTGTTGGTTCGTGTGATGTTAAGTTTCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTTACGAACCAGAGTTATTCCCTGGATTGATATATCGGATGAAACAACCAAAGATCGTGCTTCTCATTTTTGTCTCTGGAAAAATAGTTTTAACTGGGGCTAAGGTGAGAGAGGAGACATATACAGCATTTGAGAATATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAATGGTAA

Protein sequence

MKQRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQW

Homology

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BLAST of HG10007338 vs. NCBI nr
Match: KAG6588117.1 (TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-75
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVREETYTAFENIYPVLTEFRKNQQW
Sbjct: 175 AKVREETYTAFENIYPVLTEFRKNQQW 201

[Close]

BLAST of HG10007338 vs. NCBI nr
Match: XP_024967072.1 (TATA-box-binding protein-like isoform X2 [Cynara cardunculus var. scolymus])

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-75
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVREETYTAFENIYPVLTEFRKNQQW
Sbjct: 175 AKVREETYTAFENIYPVLTEFRKNQQW 201

[Close]

BLAST of HG10007338 vs. NCBI nr
Match: XP_035539709.1 (TATA-box-binding protein-like isoform X1 [Juglans regia] >KAF5451764.1 hypothetical protein F2P56_026840 [Juglans regia])

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-75
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 56  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 115

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 116 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 175

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVREETYTAFENIYPVLTEFRKNQQW
Sbjct: 176 AKVREETYTAFENIYPVLTEFRKNQQW 202

[Close]

BLAST of HG10007338 vs. NCBI nr
Match: KAA0055733.1 (TATA-box-binding protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 8.7e-75
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 4   RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI 63
           RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI
Sbjct: 59  RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI 118

Query: 64  QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGA 123
           QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGA
Sbjct: 119 QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGA 178

Query: 124 KVREETYTAFENIYPVLTEFRKNQQW 150
           KVREETYTAFENIYPVLTEFRKNQQW
Sbjct: 179 KVREETYTAFENIYPVLTEFRKNQQW 204

[Close]

BLAST of HG10007338 vs. NCBI nr
Match: PPR89642.1 (hypothetical protein GOBAR_AA31038 [Gossypium barbadense])

HSP 1 Score: 290.4 bits (742), Expect = 8.7e-75
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 31  QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 90

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TG
Sbjct: 91  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 150

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 151 AKVRDETYTAFENIYPVLTEFRKNQQW 177

[Close]

BLAST of HG10007338 vs. ExPASy Swiss-Prot
Match: P48511 (TATA-box-binding protein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.3e-76
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVREETYTAFENIYPVLTEFRKNQQ
Sbjct: 175 AKVREETYTAFENIYPVLTEFRKNQQ 200

[Close]

BLAST of HG10007338 vs. ExPASy Swiss-Prot
Match: Q42808 (TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.2e-76
Identity = 143/146 (97.95%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVR+ETYTAFENIYPVLTEFRKNQQ
Sbjct: 175 AKVRDETYTAFENIYPVLTEFRKNQQ 200

[Close]

BLAST of HG10007338 vs. ExPASy Swiss-Prot
Match: P26357 (TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-75
Identity = 142/146 (97.26%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAY+HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVR+ETYTAFENIYPVLTEFRKNQQ
Sbjct: 175 AKVRDETYTAFENIYPVLTEFRKNQQ 200

[Close]

BLAST of HG10007338 vs. ExPASy Swiss-Prot
Match: Q8W0W4 (TATA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP2 PE=1 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 3.1e-75
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 58  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 117

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 118 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 177

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVR+ETYTAFENIYPVLTEFRK QQ
Sbjct: 178 AKVRDETYTAFENIYPVLTEFRKVQQ 203

[Close]

BLAST of HG10007338 vs. ExPASy Swiss-Prot
Match: P50159 (TATA-box-binding protein 2 OS=Zea mays OX=4577 GN=TBP2 PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.0e-75
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AKVREETYTAFENIYPVL+EFRK QQ
Sbjct: 175 AKVREETYTAFENIYPVLSEFRKIQQ 200

[Close]

BLAST of HG10007338 vs. ExPASy TrEMBL
Match: A0A6P9DWS1 (TATA-box-binding protein-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109010375 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.2e-75
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 56  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 115

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 116 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 175

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVREETYTAFENIYPVLTEFRKNQQW
Sbjct: 176 AKVREETYTAFENIYPVLTEFRKNQQW 202

[Close]

BLAST of HG10007338 vs. ExPASy TrEMBL
Match: A0A5A7UIK5 (TATA-box-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001180 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.2e-75
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 4   RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI 63
           RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI
Sbjct: 59  RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKI 118

Query: 64  QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGA 123
           QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGA
Sbjct: 119 QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGA 178

Query: 124 KVREETYTAFENIYPVLTEFRKNQQW 150
           KVREETYTAFENIYPVLTEFRKNQQW
Sbjct: 179 KVREETYTAFENIYPVLTEFRKNQQW 204

[Close]

BLAST of HG10007338 vs. ExPASy TrEMBL
Match: A0A2P5WEW4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31038 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.2e-75
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 31  QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 90

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TG
Sbjct: 91  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 150

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 151 AKVRDETYTAFENIYPVLTEFRKNQQW 177

[Close]

BLAST of HG10007338 vs. ExPASy TrEMBL
Match: A0A6P5YY37 (TATA-box-binding protein-like isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111295743 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.5e-75
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 56  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 115

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TG
Sbjct: 116 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG 175

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVREETYTAFENIYPVLTEFRKNQQW
Sbjct: 176 AKVREETYTAFENIYPVLTEFRKNQQW 202

[Close]

BLAST of HG10007338 vs. ExPASy TrEMBL
Match: A0A151U2X0 (TATA-box-binding protein OS=Cajanus cajan OX=3821 GN=KK1_006271 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.2e-75
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQW 150
           AKVR+ETYTAFENIYPVLTEFRKNQQW
Sbjct: 175 AKVRDETYTAFENIYPVLTEFRKNQQW 201

[Close]

BLAST of HG10007338 vs. TAIR 10
Match: AT1G55520.1 (TATA binding protein 2 )

HSP 1 Score: 269.2 bits (687), Expect = 1.9e-72
Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AK+REETYTAFENIYPVL EFRK QQ
Sbjct: 175 AKMREETYTAFENIYPVLREFRKVQQ 200

[Close]

BLAST of HG10007338 vs. TAIR 10
Match: AT1G55520.2 (TATA binding protein 2 )

HSP 1 Score: 269.2 bits (687), Expect = 1.9e-72
Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AK+REETYTAFENIYPVL EFRK QQ
Sbjct: 175 AKMREETYTAFENIYPVLREFRKVQQ 200

[Close]

BLAST of HG10007338 vs. TAIR 10
Match: AT3G13445.1 (TATA binding protein 1 )

HSP 1 Score: 265.4 bits (677), Expect = 2.8e-71
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITG 174

Query: 123 AKVREETYTAFENIYPVLTEFRKNQQ 149
           AK+R+ETY AFENIYPVL+EFRK QQ
Sbjct: 175 AKMRDETYKAFENIYPVLSEFRKIQQ 200

[Close]

BLAST of HG10007338 vs. TAIR 10
Match: AT3G13445.2 (TATA binding protein 1 )

HSP 1 Score: 228.0 bits (580), Expect = 4.9e-60
Identity = 115/123 (93.50%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 3   QRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFK 62
           +RFAAVIMRIREPKTTALIFASGKMVCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFK
Sbjct: 55  KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFK 114

Query: 63  IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 122
           IQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TG
Sbjct: 115 IQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITG 174

Query: 123 AKV 126
           AKV
Sbjct: 175 AKV 177

The following BLAST results are available for this feature:

BLAST of HG10007338 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588117.1	6.6e-75	99.32	TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_024967072.1	6.6e-75	99.32	TATA-box-binding protein-like isoform X2 [Cynara cardunculus var. scolymus]	[more]
XP_035539709.1	6.6e-75	99.32	TATA-box-binding protein-like isoform X1 [Juglans regia] >KAF5451764.1 hypotheti...	[more]
KAA0055733.1	8.7e-75	100.00	TATA-box-binding protein isoform X2 [Cucumis melo var. makuwa]	[more]
PPR89642.1	8.7e-75	98.64	hypothetical protein GOBAR_AA31038 [Gossypium barbadense]	[more]

BLAST of HG10007338 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48511	1.3e-76	99.32	TATA-box-binding protein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
Q42808	6.2e-76	97.95	TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1	[more]
P26357	1.1e-75	97.26	TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1	[more]
Q8W0W4	3.1e-75	97.95	TATA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP2 PE=1 SV=...	[more]
P50159	4.0e-75	97.95	TATA-box-binding protein 2 OS=Zea mays OX=4577 GN=TBP2 PE=2 SV=1	[more]

BLAST of HG10007338 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P9DWS1	3.2e-75	99.32	TATA-box-binding protein-like isoform X1 OS=Juglans regia OX=51240 GN=LOC1090103...	[more]
A0A5A7UIK5	4.2e-75	100.00	TATA-box-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A2P5WEW4	4.2e-75	98.64	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31038 PE=3 SV...	[more]
A0A6P5YY37	5.5e-75	98.64	TATA-box-binding protein-like isoform X1 OS=Durio zibethinus OX=66656 GN=LOC1112...	[more]
A0A151U2X0	7.2e-75	98.64	TATA-box-binding protein OS=Cajanus cajan OX=3821 GN=KK1_006271 PE=3 SV=1	[more]

BLAST of HG10007338 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55520.1	1.9e-72	93.15	TATA binding protein 2	[more]
AT1G55520.2	1.9e-72	93.15	TATA binding protein 2	[more]
AT3G13445.1	2.8e-71	91.10	TATA binding protein 1	[more]
AT3G13445.2	4.9e-60	93.50	TATA binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000814	TATA-box binding protein	PRINTS	PR00686	TIFACTORIID	coord: 63..79 score: 82.48 coord: 106..122 score: 85.86 coord: 16..34 score: 86.79 coord: 87..102 score: 86.3
IPR000814	TATA-box binding protein	PFAM	PF00352	TBP	coord: 2..51 e-value: 1.5E-18 score: 66.5 coord: 60..142 e-value: 7.7E-33 score: 112.3
IPR000814	TATA-box binding protein	PANTHER	PTHR10126	TATA-BOX BINDING PROTEIN	coord: 3..148
IPR012295	TBP domain superfamily	GENE3D	3.30.310.10		coord: 2..63 e-value: 4.0E-74 score: 249.7
IPR012295	TBP domain superfamily	GENE3D	3.30.310.10		coord: 64..143 e-value: 4.0E-74 score: 249.7
None	No IPR available	PANTHER	PTHR10126:SF48	TATA-BOX-BINDING PROTEIN 1	coord: 3..148
None	No IPR available	SUPERFAMILY	55945	TATA-box binding protein-like	coord: 3..62
None	No IPR available	SUPERFAMILY	55945	TATA-box binding protein-like	coord: 60..146
IPR030491	TATA-box binding protein, conserved site	PROSITE	PS00351	TFIID	coord: 91..140
IPR033710	TATA-box binding protein, eukaryotic	CDD	cd04516	TBP_eukaryotes	coord: 4..143 e-value: 5.0926E-103 score: 290.275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007338.1	HG10007338.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity