HG10007256 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007256
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S16
Location	Chr10: 3070972 .. 3072672 (-)
RNA-Seq Expression	HG10007256
Synteny	HG10007256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTTAATTGATTGATGACTTCTGCTACTCGTGTATTGGAATTTAGATTCTTGATTTGAATATTTCATTTCTGTTATTGATTTGAGTAATTTTTGTTTGCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTAAGTGATTGCTTTTGATTTATTTACACTACTTCATTCTAAGATATGCTTGGTTCTTGAATTTAAACGCTGGGTTGCAATTGTTAGTGCTAGTTTACTTGTTAATCAGAATAGAGTACTCTTTCGTCATTGCTTCTTCAATCGACTTTTACTTGAATTTTTTTCCGAATTCTCGATCTTTCTCCACATTGCTTTGAGTGTTATTAAGAGAATGGCCAACTGACAATTTAAGCTTTTAATTAGAATCAGTTAACAAAACAAGCTAGCTGAAACTTGTAAGGTCTAGTAGTGAAGCTACGTGCCCTTGAAACAAAAGGTCCTAATTCCAAATTCATGCTATATTAGTTTCTATACCATTTCATGCTAAAAGTTCACATCTTGCACCTTACGAATCAAAGAGTTAAAGTCATTTTTGTAATTATTCTTTAGGCGACAATTTACATAGTTGGCTACCCCCTTTCTTCAGGGGAGTTTTTTTTTTTTTGCTTGGTTTTTTGTATACCCTTGTTTAAGTGTATGTTGTCTTAATAACCTTAGCTTTTGAATTCAGTGGTGATTTAATAGGTTAGGAGTTTGAGGGGAGACTACATTTTCTAGTGATGAAGGTATTAATGAAAGAGTGAAAAAGGGGATATGGTTATCAAGTTGATGGAGACGATGAGGAAATGCTTACTTTTTAGAGCATCTAGTCATTTTATGAAGTAATTATGCTGCCCCTTAGGAATGTAGAATCTGGTGTTTGCTATCTTTTGCATTTCTAATTCAAGTTATGATTATTGATTAGTAAACAGCTCAGAGGATAAAACGTTTAAGATGAAATGTTATCTAAGAAGATCATTCTTATTGTACGGTCTTGACTCTTGTGCAACGCATATAAGTAAACCATAAGGTATATAAGTTTTTAGCAGTTAGAGTTTGGTCTCTGGTTTCTTTGTGGCTTAGAGCCCATCAGTTTACTATTCCTCCAATTCCTCGATTGCTATAAACACTTTCGTCGACCTTCTTTTTTTTTTTTTTGGGTAACACCTCTCTTCATTTTAAGGTCCTGTATTTCAAAAAGAGTTGCTATAAGCTGAGATTGGATAATTTAGACTATTTTACTGCATAAGCTTTGCTGTTTTACTGTGGTAGTATTCATTTCAAACTCATAGGTACCACAACCTCGTCTTTCATACTAATCATTCACTCATCACTCCCTCCCATCCTTCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTCATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGCTGATTCATAA

mRNA sequence

ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTCATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGCTGATTCATAA

Coding sequence (CDS)

ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTCATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGCTGATTCATAA

Protein sequence

MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS

Homology

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BLAST of HG10007256 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 257.7 bits (657), Expect = 5.4e-65
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF+TPEKPTD S
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120

Query: 121 NGKDGNADS 130
           + KDGNADS
Sbjct: 121 SSKDGNADS 129

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BLAST of HG10007256 vs. NCBI nr
Match: XP_038880699.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 9.2e-65
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTR VDPLSGRF+TPEKPTD S
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRLVDPLSGRFVTPEKPTDSS 120

Query: 121 NGKDGNADS 130
           +GKDG+ADS
Sbjct: 121 SGKDGDADS 129

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BLAST of HG10007256 vs. NCBI nr
Match: XP_023516386.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023516387.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPS+PVQRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR ++PEKPTD S
Sbjct: 61  YWLSVGAQPSEPVQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTDDS 120

Query: 121 NGKDGNADS 130
           + KDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]

BLAST of HG10007256 vs. NCBI nr
Match: XP_023529314.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRD+RPVDPLSGRF TP+K TD S
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDSRPVDPLSGRFTTPQKATDDS 120

Query: 121 NG-KDGNADS 130
           N  KDGNADS
Sbjct: 121 NSTKDGNADS 130

[Close]

BLAST of HG10007256 vs. NCBI nr
Match: XP_022933978.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K TD S
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 N-GKDGNADS 130
           N  KDGNADS
Sbjct: 121 NSSKDGNADS 130

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BLAST of HG10007256 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-55
Identity = 98/121 (80.99%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSR PRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDTRPVDP++GR++  E  T  +
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 N 122
           N
Sbjct: 121 N 121

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BLAST of HG10007256 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-31
Identity = 60/112 (53.57%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +  RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT-RPVDPLSGRFI 112
           YWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]

BLAST of HG10007256 vs. ExPASy Swiss-Prot
Match: A8LMC0 (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rpsP PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-20
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGVLP 85
          YWL  GA+P+D V R+L  A VLP
Sbjct: 61 YWLGEGAKPTDRVARMLEAAEVLP 84

[Close]

BLAST of HG10007256 vs. ExPASy Swiss-Prot
Match: Q5LNF2 (30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rpsP PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-20
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGVL 84
          YWLS GAQ +D V R+L  AGV+
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83

[Close]

BLAST of HG10007256 vs. ExPASy Swiss-Prot
Match: Q16AN8 (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=rpsP PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.5e-20
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGV 83
          YWL  GAQP+D V R+L  AG+
Sbjct: 61 YWLGQGAQPTDRVARMLEAAGL 82

[Close]

BLAST of HG10007256 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.6e-65
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF+TPEKPTD S
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120

Query: 121 NGKDGNADS 130
           + KDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]

BLAST of HG10007256 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.1e-63
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K TD S
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 N-GKDGNADS 130
           N  KDG+ADS
Sbjct: 121 NSSKDGDADS 130

[Close]

BLAST of HG10007256 vs. ExPASy TrEMBL
Match: A0A6J1F6D0 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441226 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.1e-63
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K TD S
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 N-GKDGNADS 130
           N  KDGNADS
Sbjct: 121 NSSKDGNADS 130

[Close]

BLAST of HG10007256 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 118/130 (90.77%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPE-KPTDG 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRF+TPE KPTD 
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGKDGNADS 130
           SNG+ G+ADS
Sbjct: 121 SNGEVGDADS 130

[Close]

BLAST of HG10007256 vs. ExPASy TrEMBL
Match: A0A1S3BQ70 (30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 118/130 (90.77%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPE-KPTDG 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRF+TPE KPTD 
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGKDGNADS 130
           SNG+ G+ADS
Sbjct: 121 SNGEVGDADS 130

[Close]

BLAST of HG10007256 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-56
Identity = 98/121 (80.99%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSR PRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGS 120
           YWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDTRPVDP++GR++  E  T  +
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of HG10007256 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32
Identity = 60/112 (53.57%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +  RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT-RPVDPLSGRFI 112
           YWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]

BLAST of HG10007256 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-09
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 2  VVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKY 61
          +V++RL R G K +  YR++A D RY R+G+ L  +G+Y+P+  Q       LN   +  
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ-----TFLNLSAILD 60

Query: 62 WLSVGAQPSDPVQRILFRAGV 83
          +L  GAQP+     I  +AG+
Sbjct: 61 FLKKGAQPTRTAHDISKKAGI 76

The following BLAST results are available for this feature:

BLAST of HG10007256 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147743.1	5.4e-65	94.57	30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]	[more]
XP_038880699.1	9.2e-65	95.35	30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa h...	[more]
XP_023516386.1	1.1e-62	92.25	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo su...	[more]
XP_023529314.1	1.1e-62	93.85	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo su...	[more]
XP_022933978.1	1.5e-62	93.85	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschat...	[more]

BLAST of HG10007256 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS6	2.4e-55	80.99	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana...	[more]
O65686	1.8e-31	53.57	30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
A8LMC0	3.2e-20	54.76	30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14...	[more]
Q5LNF2	3.2e-20	55.42	30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /...	[more]
Q16AN8	5.5e-20	54.88	30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh ...	[more]

BLAST of HG10007256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D251	2.6e-65	94.57	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ...	[more]
A0A6J1HXD7	7.1e-63	93.85	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1F6D0	7.1e-63	93.85	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch...	[more]
A0A5D3CDW9	2.1e-62	90.77	30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BQ70	2.1e-62	90.77	30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1	[more]

BLAST of HG10007256 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56940.1	1.7e-56	80.99	Ribosomal protein S16 family protein	[more]
AT4G34620.1	1.3e-32	53.57	small subunit ribosomal protein 16	[more]
ATCG00050.1	4.5e-09	35.80	ribosomal protein S16	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000307	Ribosomal protein S16	TIGRFAM	TIGR00002	TIGR00002	coord: 3..82 e-value: 2.3E-31 score: 105.6
IPR000307	Ribosomal protein S16	PFAM	PF00886	Ribosomal_S16	coord: 9..70 e-value: 2.4E-26 score: 91.6
IPR000307	Ribosomal protein S16	PANTHER	PTHR12919	30S RIBOSOMAL PROTEIN S16	coord: 1..111
IPR000307	Ribosomal protein S16	HAMAP	MF_00385	Ribosomal_S16	coord: 2..80 score: 23.450527
IPR023803	Ribosomal protein S16 domain superfamily	GENE3D	3.30.1320.10		coord: 1..105 e-value: 1.4E-45 score: 156.3
IPR023803	Ribosomal protein S16 domain superfamily	SUPERFAMILY	54565	Ribosomal protein S16	coord: 3..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..129
None	No IPR available	PANTHER	PTHR12919:SF30	30S RIBOSOMAL PROTEIN S16-LIKE	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007256.1	HG10007256.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003735	structural constituent of ribosome