HG10007140 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007140
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiontrafficking protein particle complex subunit 6B
LocationChr10: 1702598 .. 1708352 (-)
RNA-Seq ExpressionHG10007140
SyntenyHG10007140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGAGAGGTATCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAACTTGCCGCCCGTCGTATCGAGGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGGTATTCCTCCACCGCACTTTCTACCCTTCTTTTTTGTTTCTCTGAATTGTCTGGGGTTTCTTTGTTGCTTACATTTTGATTTCCAGAGTTGGCTAATGGATCTCTGGTTGCTCTGTGACTCTGATTCAATTTCCCAATTCTTTTATCGTTACGTTTTCTATTTTAGTGAATGTGTATGTTTGAGAGATTTATAATTGAGAATGTGAAGAACAATAGTTGGGACTAGAATTGCGAGTTAGAAGTGTTCCCCCAACACCCCACCACTTAAAGGAAAAGGAAGTTTTGTGTAATTGAAAACATCTAGCATTCTGTACTGAAAGCTGGAAGACAAAAGGTTGAATATTGCTGAATAATAGAATTGTATATTTGATGTGGACCATTTTTTTGGGAAATGAAAGAAACTCAATAACCAAAAGAGTATTTAAAAAGGGTGTATGAGGTACTCCCTCAATGAGGTACTCCCTCAATGAGGTAATAATAGCCCTAAAATAACTTGGATCAAAGAATCTTTGTCTTGACTCTGGAGATGATGGGAGCCATAAACAGATTATAGGTATTGGTGTAGACAGAAACAGATTATAGGTCCTTCTTCATTGATCTCCAATTGGCATGATCTTTTGTATCTCACGTGTTGGCGATGGGAGCCCTTAAAGCTCTTTTATTTCATTTATTAATGTTGTTTATTTCTCCTCTAAAAAAATGTAGACTGTGGCCTCTTTGATCTTCCTTTGACGAATGGTAAGTTTACTTGATCTAATTGGAGGGTATGTGCCTAAATAGATCGATTTTTTTGTCCATAGAGTGGTTAGACTCTTTTATAGCATGACAATGGTTAGGCTCTTGAGTTACTTCTGATCAATTGTTGATGTAATTAGATTCAGGCATTTTGAAATGAGTTCTAACCCCGTTTAGATTTGAAATATGTGCCTGTTTCATCCTTCTTTTAGAGTCTATTTACCCTCTAGTGGACAGCGGAGGTCTTAGGGAGATGGGAAGATTATCGTTTTTGGGGAAGCTTTGTAGTTTGAGAGAGTCTCTTAAAATTTAGAATCGTAAAGTTTTTGGAGACTTGAAGATCAAAAAACAGGATTTACTAAATTGTATTACCATGCTGGATAGATCGGAGGAAGTGAGTTCCCTGAGCTTTGAACTGAGAGAGGAAAGTTTATCTCTGATAGTTGAGTTTGAAGAGGTGATTAAAAGTGAAACTATTAGCTAGAGGCAAAAGGCTAAATTTACATGGGCTAAGGACGGTGACAACAACGCAACTTACTTCCATAGGGTGGCTTGCGGAAGGAGTAGAAATGCTATTGACTCCCTAGTACGCAAAGATGGGAGAACTATACAAGAGGATAAGGAGATTGAAGAGGAGGTTCTCTCTATTTTCTCCCCTCTTGTTTAGATCACTATGAAGGTTTGCAATACCCGGGAGTAACTTATGCTTAACTTTGTATAGGGAGGGGTGGTGGAAGGGAAGGCTTCTCACTTGGTTAAGTTGGGAAGTTGTGACTAATCTGATGGAGCTTGGTGGCTTGGGTATAGGAATCTTAAGGTTCGAACAAGGCCTTGCTAGCTAAGTGGTTGTGGCATTTTCCTCGTGAGTCTAAAAGTTTATGGCCTAAGGTTATTATGAGCAAATACAATCCTTATCCTTTTACTTGGCTCATGAATAGGATGATGGGAGGAACTATTAGAAATCCTTGGAAAGCTATTTTAGACAGACTCCCTTTCTTTGCTCAATTTATTCATTGGATTGTGGGCAACGAGACGAGTACTTACTTTTGGGAAGACACGTGATTCGGGGATAGTCCTCTCTGCAAAGCCTTCCTTTGTCTTCGTCATTTGTCCAATGCAAAGTTTTTTGTGGCTTCCATCCTCCCATCTTTTAGAAACTCTTCCTTTATTGGAAAGCTACCCAATAAAATCTTCTTCACACCTATTTGGAAAATCACCAAGCTAAGTCAAGGTGACGAATGAAATTTAACTCTTGATTCTTGAGAGGAAAAGCTACAGAGGAGAGTAAGTTTACACATTGCTAAACCACACAAATTTGAGGAGAAAGAAGAGGTTTGGATGACCTTTCCAAACGGGTTTAGGTTGTTAAATACTGATGTCCAATGAAGTTCCATCATTGAGAGACAAAGCTGCAGTGGAAAAAAGGTTGTTGGAAATTTCCACATTGCTAAACAAGCAGACTTTATGAGAAAGAATTTGGTCTGTGGCCTTCCCGATAAGCTTGAGCTAGATCCAAGAAAAATCCTGCTTGATTGAATGGCTTTTTCTTAGCTTATTTGATTGAAAACAACTGGATCTTTCAAGAGTCCATATTTTAGGGATTGCGGAAGCATAATAAAGGAGCATCTAGAAATTTTCCCATTCTTCTAACTCTGTCAATTAGGCTGCCTCTAATAAGTAAATTTTAAGCTTTGTTGTCTTTGCACCAGCACCCAAAAAAAGTTAAGAGTTAGCAATTACTCTAAAACCAAAGGGAAATTCTCTGAAACAAATCTGATGAAAACTAAGAAGCAATAAACAAAGCATCAACCTATAAATTTCTTTAAAAAGTAGGACAAGAATTAAGGAGCATGGACACTGACACGCGACACGAATACGACACGACACTGACACGGCGACACGTCAATTTACAAGAAAGTAGGACACGACACGTTGGGGACACATTATTTATCTTTACAAAAATAAATATATGTGTGCATAATTTGACATATTGTGAGATATGGGCACATATATTTAACAAAAAGTAAGAGAAAAACATAAACGAAAAAAAAAAAGGAAAGTAAAGATAAAAACAGAAGGAAAAAAAACAGTAAGAGAAGTCACATAAGTTGTCGGCCGTTGTGGGTCTTGAAGTTGAAGTCACCGTCGTCGATGAAGTTAAGAAAGAAGAATTAAGTAGCATAGTGGGTTTATTATTTTTTTTAAAAAAAAATTGTGGGTTAAGTTTTGAGGCTGAAGTGTGTGAGTACGGAGAAAGTGTGTAAAAACTCTAGAATTTTGAAAAAGTTGGGTTGAACAGTTAATTTTAATTAGCTTAAAATCCCCCTTAAATGGGCTACCGATAGTGGTTCTTGTTTCATTATTTTTTTTAAAAAAAATTTGCATATGGAGTGTCCTTGTCGTGTCGCTAGCGTGTCCTGACGTGTCGGAAAGCAAACAAATAATAATAAAATAATGGACACGCCAACTGGCGTGTCGAACACATGTCGGTGTCCGACACTGACACTTCGCCAGTTTAGAAGTGTTGGTGCTTTATATGAATAAATATGTGACACACTTCTTTTATAGAACATTTGTTTATATATTGATATATCAAATACTTCAAAATAGATAGAAGTTTAGAACATGTATATTTAACATAAAACAAATATTAGGGTGGGGTGTTTGGGTACAAAGTTCAGGGACCAAGATCTTTTTTGTAAAGTATCATTGTCTGGGTATACAGGTCAAATACTAATATGTCATGGTATGCAAAGATGACTATTCCAATGTATGATGGACTAGGTTATTATGATAAGAGATTTATTAGTAAGTCAAGATCTAATTGCTAGTTAGTGGAAATTTTAACCTTCTACATAGAGGCAAGCCTCTTACGAACCTTACCATCAGGGCCCCAGAACATATTTGAGACAACCTTGAGAGCTCAAGAACTTATATTGTTTCAAATTGACGAACCTATTGGGTACAACTATGAAAGTTATAGGACTAAACTTACTAAGCTAGATTTATGAAATTGTGTGACTTATGGATTTATAGTTAGAAAGTATGAATTGAACTTGAAAAATACTTAGTAATGTTTCCACTTAAAAACCAGAAAAGTTGGGGCATTGTACGTGTTGTGATCATGGGACTGAGGGTAATGATCATGTGTTTATGAGGTGATCCAAGTTGGTATGTTTGCAGGTGACTTTGAAATCCTTGTTCAGGTCTATTTTAAAGGGTAGGGGCTGAGTGTCTTAATTGAGCTGAATCCATTGGAGGGTGAAGGGAGATGTGAATTTTTTGTGTACTGATGTATTGGAGGAAATCTAACAAGGCTTGAATAGATTTGCCTCGGTTTTTAAACCTTTTATGTCACCTTCATCACAGGACTAGTAGCACATATTGCATTGTTACTAACTAGATATGTCTTGTATGACTCCTATTGTTGTCCACCATTTCAAAAGGATGAAATTGAGTGGTTGTTTTATGGAATGTTATTAACTGGGATTGTTCAATTCAGCTCTAGATTGTTTTCAAGCCGCGTTTTATTGATTAAGAGAATACTTTCATTTTTATGTTGGTTATAAAGCTTTAAATTGAGTAATGATTCCAAACAAATATCTCATTTGAGTTGCGGATGTGTTGCTAGATGAACTGTGTATGCTGGCAGTATCTTTTCCAAAATCAATTTGAAGGGTACCCCTGATTATGCTATTACTAGAGGATATTTGTAGTAATGCCGTAAAGGTTGAGTAATATTCCCTTAACTTTGCAATCTGTGATGAATAATGTCCTTTGGCCCTTCTTACAGGTTGTCTTGTTCAGGTTTATAGTGTCGTTTTGAAGGATCGTTTGAGCTTCTTGCAGCAGTTCTTCAGGTGCTTCGGGAGCATCAGTTAGTTACTAAAATGTGTCAGCTTGCATTGTCCCACATCTTGTATTTGGCCATGTAGTGTTAGCTTAACTGAAGAAGTTGCCTCTAATCCTTTCTACATTTGCTGCAAAGGATCAATGGCATGTAAACCCAAAAATTTGGAGTTATGCGGATTCTAGGCCAGTACGATACGTTTTTTTTTTTTTTGTCAATTCTGAAATTGGGGGTTGCCACGGGCATAATACTGCCAGAATCTTGCCCAACAATGTGACTGTAGGGGAATAGAGCAGTTGCGAGCAAGAGAGGTTTACATTAGATGTGAAAATGGGAGGGTATGCTTTGGTAGGAAAGTAGAAACCGGGAGAGCATGGGAACTCTGATCTTTCCCTAGTGACGTTTGTTTCCCTGTTTAGCTTGTATTTGATCTCAAGTAAAATTTTCTGCTGAGAGTTTCTATACATTATGACTTAGCTTCCATTTTTCCTTGCCCATTTTATGGCTTCTTATTCATGGTACTTGATGATTAAATACTGCAACTTAACTGTTTGCTTTGTTTCCAATAGATATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGTAAGATCAAAAGCCAAACCTAGGAGCAGCCCTTTCTTTTTCCTGTGTACTTTACTTTATCGTACATGAACTTGGCCTAAATTCGGAAAATTGTTTTGATTCCCAGGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGTATGTCAGTGGATCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTAAGTAA

mRNA sequence

ATGGGGAGAGAGGTATCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAACTTGCCGCCCGTCGTATCGAGGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGATATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGTATGTCAGTGGATCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTAAGTAA

Coding sequence (CDS)

ATGGGGAGAGAGGTATCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAACTTGCCGCCCGTCGTATCGAGGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGATATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGTATGTCAGTGGATCCTCAAAGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGTGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTAAGTAA

Protein sequence

MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACK
Homology
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BLAST of HG10007140 vs. NCBI nr
Match: XP_038878648.1 (trafficking protein particle complex subunit 6B [Benincasa hispida])

HSP 1 Score: 339.0 bits (868), Expect = 2.3e-89
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 163

[Close]
BLAST of HG10007140 vs. NCBI nr
Match: XP_008450728.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo] >TYK10194.1 trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 161/163 (98.77%), Postives = 163/163 (100.00%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 163

[Close]
BLAST of HG10007140 vs. NCBI nr
Match: XP_004135644.1 (trafficking protein particle complex subunit 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 3.4e-88
Identity = 160/163 (98.16%), Postives = 162/163 (99.39%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           GENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 GENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 163

[Close]
BLAST of HG10007140 vs. NCBI nr
Match: XP_008450727.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 6.4e-87
Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE----RYTMER 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE    RYTMER
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFRYTMER 60

Query: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQD 120
           PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQD
Sbjct: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD 120

Query: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 167

[Close]
BLAST of HG10007140 vs. NCBI nr
Match: KAG7023966.1 (Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQSESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSA
Sbjct: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190

Query: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 234

[Close]
BLAST of HG10007140 vs. ExPASy Swiss-Prot
Match: Q32L78 (Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.9e-31
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR LT+MS   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLTQMSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 150

Query: 156 DISNLPACK 165
           ++S++PACK
Sbjct: 155 EVSSMPACK 150

[Close]
BLAST of HG10007140 vs. ExPASy Swiss-Prot
Match: Q86SZ2 (Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.9e-31
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR LT+MS   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLTQMSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 150

Query: 156 DISNLPACK 165
           ++S++PACK
Sbjct: 155 EVSSMPACK 150

[Close]
BLAST of HG10007140 vs. ExPASy Swiss-Prot
Match: F1QMV3 (Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc6b PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30
Identity = 62/129 (48.06%), Postives = 88/129 (68.22%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T + PRF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 34  KLENMGFRVGQGLIERFTKDTPRFKDELDVMKFICKDFWTSVFKKQIDNLRTNHQGIYVL 93

Query: 96  QDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR LT++S   Q               +     L F CG++RGALSN+G+   V+A
Sbjct: 94  QDNKFRLLTQLSAGKQ-------------YLEHAPKFLAFTCGLVRGALSNIGVKSIVTA 149

Query: 156 DISNLPACK 165
           ++S +PACK
Sbjct: 154 EVSVMPACK 149

[Close]
BLAST of HG10007140 vs. ExPASy Swiss-Prot
Match: Q9D289 (Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 63/129 (48.84%), Postives = 89/129 (68.99%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR L ++S   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLIQLSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 150

Query: 156 DISNLPACK 165
           ++S++PACK
Sbjct: 155 EVSSMPACK 150

[Close]
BLAST of HG10007140 vs. ExPASy Swiss-Prot
Match: Q78XR0 (Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 0 

Query: 37  IEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 96
           +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQ
Sbjct: 37  LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQ 96

Query: 97  DNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD 156
           DN F  L  M   PQ               +     L F CG++ GAL  LG    V+A 
Sbjct: 97  DNSFPLLVTMGSGPQ-------------YLEEAPKFLAFTCGLLCGALHTLGFQSLVTAS 151

Query: 157 ISNLPACK 165
           +++LPACK
Sbjct: 157 VASLPACK 151

[Close]
BLAST of HG10007140 vs. ExPASy TrEMBL
Match: A0A5D3CG65 (Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003390 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 5.6e-89
Identity = 161/163 (98.77%), Postives = 163/163 (100.00%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 163

[Close]
BLAST of HG10007140 vs. ExPASy TrEMBL
Match: A0A1S3BP90 (trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 5.6e-89
Identity = 161/163 (98.77%), Postives = 163/163 (100.00%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 163

[Close]
BLAST of HG10007140 vs. ExPASy TrEMBL
Match: A0A0A0M1M8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.6e-88
Identity = 160/163 (98.16%), Postives = 162/163 (99.39%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           GENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 GENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 163

[Close]
BLAST of HG10007140 vs. ExPASy TrEMBL
Match: A0A1S3BQW9 (trafficking protein particle complex subunit 6B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.1e-87
Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE----RYTMER 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE    RYTMER
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFRYTMER 60

Query: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQD 120
           PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQD
Sbjct: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD 120

Query: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 167

[Close]
BLAST of HG10007140 vs. ExPASy TrEMBL
Match: A0A6J1I0Q5 (trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=LOC111467932 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.3e-87
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQSESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164

[Close]
BLAST of HG10007140 vs. TAIR 10
Match: AT3G05000.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 288.5 bits (737), Expect = 3.4e-78
Identity = 138/165 (83.64%), Postives = 152/165 (92.12%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRF+
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQS--ESQDNS 120
           DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP S  E+QD S
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSENETQDPS 120

Query: 121 ADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 164
             GE+KAAQA SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP C
Sbjct: 121 TPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTC 165

The following BLAST results are available for this feature:
BLAST of HG10007140 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038878648.12.3e-89100.00trafficking protein particle complex subunit 6B [Benincasa hispida][more]
XP_008450728.11.2e-8898.77PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis m... [more]
XP_004135644.13.4e-8898.16trafficking protein particle complex subunit 6B isoform X2 [Cucumis sativus][more]
XP_008450727.16.4e-8796.41PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis m... [more]
KAG7023966.11.1e-8698.17Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma... [more]
BLAST of HG10007140 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q32L783.9e-3150.39Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6... [more]
Q86SZ23.9e-3150.39Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPP... [more]
F1QMV31.5e-3048.06Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc... [more]
Q9D2892.0e-3048.84Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trap... [more]
Q78XR01.0e-2340.63Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trap... [more]
BLAST of HG10007140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CG655.6e-8998.77Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. ... [more]
A0A1S3BP905.6e-8998.77trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=36... [more]
A0A0A0M1M81.6e-8898.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=3 SV=1[more]
A0A1S3BQW93.1e-8796.41trafficking protein particle complex subunit 6B isoform X1 OS=Cucumis melo OX=36... [more]
A0A6J1I0Q55.3e-8798.17trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of HG10007140 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05000.13.4e-7883.64Transport protein particle (TRAPP) component [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1380.20Trafficking protein particle complex subunit 3coord: 5..164
e-value: 2.7E-58
score: 198.1
NoneNo IPR availablePANTHERPTHR12817:SF6TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6A-RELATEDcoord: 1..163
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 11..161
e-value: 2.8E-46
score: 157.0
IPR037992TRAPP complex, Trs33 subunitPANTHERPTHR12817TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6Bcoord: 1..163
IPR037992TRAPP complex, Trs33 subunitCDDcd14944TRAPPC6A_Trs33coord: 6..164
e-value: 5.32468E-81
score: 234.841
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 3..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007140.1HG10007140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0030008 TRAPP complex