HG10007132 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATTGTGTTTACGATGATGGACATTTCGACGATGAACGTTATCATCAAATCTTAGAAATTCGAAGACGTTTTATCCATTGTCTCATGTTTGAATTTCCTTCTCAAATCATCCATCAAACTGCACCATTTCCACTCGGCAATAATAATGTTGTTTTTCCTCTCCCTTTCTATCTTCTCTATGACCATGAATCAATTTCCTTCCCCATCTACATCGCCCAATTGCTTTCCTCTTGCAACATCGACTCCGACGTTTCCGAAATCATTGCTGGGGAAATCGCCCTCCTCGTCAACGAAGCCACCGACAAAAATCCAAATGAGAGTTTCCACATTGTTGCCGTTGTCGACTATGTCAAATACACCTGGATGGAACCATTATCGATCCCAACGCAGCAGCCGACGAGCAACATGGTGAGGATGGAGAAGTTGGAGGAGATTGGAGAAGACTTGGGAGATTGTTGTATTTGTTTGGAGAGATTTTGTTGTAATGAGGAGAAGGTGGTAAAGATCCCCAGTGGACATGTGTATCATGAATCATGTATTTTGAAGTGGTTGGACAATAGTCATTTTTGCCCTTTGTGTAGGAGGGCAATATTGCCACTTCAGGACTAA ATGTATTGTGTTTACGATGATGGACATTTCGACGATGAACGTTATCATCAAATCTTAGAAATTCGAAGACGTTTTATCCATTGTCTCATGTTTGAATTTCCTTCTCAAATCATCCATCAAACTGCACCATTTCCACTCGGCAATAATAATGTTGTTTTTCCTCTCCCTTTCTATCTTCTCTATGACCATGAATCAATTTCCTTCCCCATCTACATCGCCCAATTGCTTTCCTCTTGCAACATCGACTCCGACGTTTCCGAAATCATTGCTGGGGAAATCGCCCTCCTCGTCAACGAAGCCACCGACAAAAATCCAAATGAGAGTTTCCACATTGTTGCCGTTGTCGACTATGTCAAATACACCTGGATGGAACCATTATCGATCCCAACGCAGCAGCCGACGAGCAACATGGTGAGGATGGAGAAGTTGGAGGAGATTGGAGAAGACTTGGGAGATTGTTGTATTTGTTTGGAGAGATTTTGTTGTAATGAGGAGAAGGTGGTAAAGATCCCCAGTGGACATGTGTATCATGAATCATGTATTTTGAAGTGGTTGGACAATAGTCATTTTTGCCCTTTGTGTAGGAGGGCAATATTGCCACTTCAGGACTAA ATGTATTGTGTTTACGATGATGGACATTTCGACGATGAACGTTATCATCAAATCTTAGAAATTCGAAGACGTTTTATCCATTGTCTCATGTTTGAATTTCCTTCTCAAATCATCCATCAAACTGCACCATTTCCACTCGGCAATAATAATGTTGTTTTTCCTCTCCCTTTCTATCTTCTCTATGACCATGAATCAATTTCCTTCCCCATCTACATCGCCCAATTGCTTTCCTCTTGCAACATCGACTCCGACGTTTCCGAAATCATTGCTGGGGAAATCGCCCTCCTCGTCAACGAAGCCACCGACAAAAATCCAAATGAGAGTTTCCACATTGTTGCCGTTGTCGACTATGTCAAATACACCTGGATGGAACCATTATCGATCCCAACGCAGCAGCCGACGAGCAACATGGTGAGGATGGAGAAGTTGGAGGAGATTGGAGAAGACTTGGGAGATTGTTGTATTTGTTTGGAGAGATTTTGTTGTAATGAGGAGAAGGTGGTAAAGATCCCCAGTGGACATGTGTATCATGAATCATGTATTTTGAAGTGGTTGGACAATAGTCATTTTTGCCCTTTGTGTAGGAGGGCAATATTGCCACTTCAGGACTAA MYCVYDDGHFDDERYHQILEIRRRFIHCLMFEFPSQIIHQTAPFPLGNNNVVFPLPFYLLYDHESISFPIYIAQLLSSCNIDSDVSEIIAGEIALLVNEATDKNPNESFHIVAVVDYVKYTWMEPLSIPTQQPTSNMVRMEKLEEIGEDLGDCCICLERFCCNEEKVVKIPSGHVYHESCILKWLDNSHFCPLCRRAILPLQD Homology
BLAST of HG10007132 vs. NCBI nr
Match: KGN66555.2 (hypothetical protein Csa_007514 [Cucumis sativus]) HSP 1 Score: 200.7 bits (509), Expect = 1.2e-47 Identity = 99/187 (52.94%), Postives = 125/187 (66.84%), Query Frame = 0
BLAST of HG10007132 vs. NCBI nr
Match: XP_023512244.1 (RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 126.7 bits (317), Expect = 2.3e-25 Identity = 83/220 (37.73%), Postives = 121/220 (55.00%), Query Frame = 0
BLAST of HG10007132 vs. NCBI nr
Match: XP_022985641.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima]) HSP 1 Score: 126.3 bits (316), Expect = 2.9e-25 Identity = 81/221 (36.65%), Postives = 120/221 (54.30%), Query Frame = 0
BLAST of HG10007132 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]) HSP 1 Score: 125.2 bits (313), Expect = 6.6e-25 Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 0
BLAST of HG10007132 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 125.2 bits (313), Expect = 6.6e-25 Identity = 73/189 (38.62%), Postives = 101/189 (53.44%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.9e-07 Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.4e-06 Identity = 26/62 (41.94%), Postives = 34/62 (54.84%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy Swiss-Prot
Match: Q9C1X4 (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.4e-06 Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 4.2e-06 Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06 Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy TrEMBL
Match: A0A0A0LW68 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G573640 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 7.0e-49 Identity = 100/190 (52.63%), Postives = 128/190 (67.37%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy TrEMBL
Match: A0A6J1J8T7 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25 Identity = 81/221 (36.65%), Postives = 120/221 (54.30%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 3.2e-25 Identity = 73/189 (38.62%), Postives = 101/189 (53.44%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy TrEMBL
Match: A0A6J1FXN0 (RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111448613 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 3.2e-25 Identity = 84/221 (38.01%), Postives = 120/221 (54.30%), Query Frame = 0
BLAST of HG10007132 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 3.2e-25 Identity = 73/189 (38.62%), Postives = 101/189 (53.44%), Query Frame = 0
BLAST of HG10007132 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 3.2e-09 Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 0
BLAST of HG10007132 vs. TAIR 10
Match: AT1G74620.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.8 bits (133), Expect = 4.6e-08 Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = 0
BLAST of HG10007132 vs. TAIR 10
Match: AT5G37270.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.8 bits (133), Expect = 4.6e-08 Identity = 39/132 (29.55%), Postives = 68/132 (51.52%), Query Frame = 0
BLAST of HG10007132 vs. TAIR 10
Match: AT1G80400.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.5 bits (132), Expect = 6.0e-08 Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 0
BLAST of HG10007132 vs. TAIR 10
Match: AT1G18770.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.5 bits (132), Expect = 6.0e-08 Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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