HG10007102 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007102
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr10: 1234412 .. 1234936 (+)
RNA-Seq ExpressionHG10007102
SyntenyHG10007102
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAACATTGGCCCTGCAAAGCATCCGGCCATAGCAAGCAAGGGCTGGCCTGCTTTTGCAAGAGCAACATCAGCCACAAGATCCCCAACTGAGTTTCCCCAGGCAAGCACAGTAAGCCCAAGTAGAGCTGCTGGGAGTTTGAGAAGCACCCCAAGAGCTGCAAGACAGTTCAGCAGTTCGCCAGCCGTGGTCGAAATCCAAAATACACTCATGACAAATGCTGCAAGCACAACAGGGACTTGCTCAGTTTTTGGGGGCTCAGTTTCCATGACAAAGTGCAGAATTGCAAGAGAGGAGCTTGCTAAGAGTACTACGAACCAAAGAGGTAAATGCGTATTTGGCAAGAGGAAAGCAATGGGATGGTTAAACGACATGAATGAGTTACAGGCATATAGAAGAGCAATGGGACAGAGACAAATATTTGCCGATGTAAAGAATCTGCTCCATTCGGAAGGTGCAGGTTGGGGAATGGTGAGCTTCAGAAGAAACGAGACAGGAGCTTCCCATGCTTTTGGGATCTAA

mRNA sequence

ATGTTAAACATTGGCCCTGCAAAGCATCCGGCCATAGCAAGCAAGGGCTGGCCTGCTTTTGCAAGAGCAACATCAGCCACAAGATCCCCAACTGAGTTTCCCCAGGCAAGCACAGTAAGCCCAAGTAGAGCTGCTGGGAGTTTGAGAAGCACCCCAAGAGCTGCAAGACAGTTCAGCAGTTCGCCAGCCGTGGTCGAAATCCAAAATACACTCATGACAAATGCTGCAAGCACAACAGGGACTTGCTCAGTTTTTGGGGGCTCAGTTTCCATGACAAAGTGCAGAATTGCAAGAGAGGAGCTTGCTAAGAGTACTACGAACCAAAGAGGTAAATGCGTATTTGGCAAGAGGAAAGCAATGGGATGGTTAAACGACATGAATGAGTTACAGGCATATAGAAGAGCAATGGGACAGAGACAAATATTTGCCGATGTAAAGAATCTGCTCCATTCGGAAGGTGCAGGTTGGGGAATGGTGAGCTTCAGAAGAAACGAGACAGGAGCTTCCCATGCTTTTGGGATCTAA

Coding sequence (CDS)

ATGTTAAACATTGGCCCTGCAAAGCATCCGGCCATAGCAAGCAAGGGCTGGCCTGCTTTTGCAAGAGCAACATCAGCCACAAGATCCCCAACTGAGTTTCCCCAGGCAAGCACAGTAAGCCCAAGTAGAGCTGCTGGGAGTTTGAGAAGCACCCCAAGAGCTGCAAGACAGTTCAGCAGTTCGCCAGCCGTGGTCGAAATCCAAAATACACTCATGACAAATGCTGCAAGCACAACAGGGACTTGCTCAGTTTTTGGGGGCTCAGTTTCCATGACAAAGTGCAGAATTGCAAGAGAGGAGCTTGCTAAGAGTACTACGAACCAAAGAGGTAAATGCGTATTTGGCAAGAGGAAAGCAATGGGATGGTTAAACGACATGAATGAGTTACAGGCATATAGAAGAGCAATGGGACAGAGACAAATATTTGCCGATGTAAAGAATCTGCTCCATTCGGAAGGTGCAGGTTGGGGAATGGTGAGCTTCAGAAGAAACGAGACAGGAGCTTCCCATGCTTTTGGGATCTAA

Protein sequence

MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSSSPAVVEIQNTLMTNAASTTGTCSVFGGSVSMTKCRIAREELAKSTTNQRGKCVFGKRKAMGWLNDMNELQAYRRAMGQRQIFADVKNLLHSEGAGWGMVSFRRNETGASHAFGI
Homology
BLAST of HG10007102 vs. NCBI nr
Match: KAG5626191.1 (hypothetical protein H5410_011409 [Solanum commersonii])

HSP 1 Score: 161.8 bits (408), Expect = 5.4e-36
Identity = 86/121 (71.07%), Postives = 96/121 (79.34%), Query Frame = 0

Query: 1   MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSS 60
           MLNIGPAKHPA+A  GWPAFA ATSATRSPTEFP ASTV P +AAGS RS+PR ARQ  S
Sbjct: 1   MLNIGPAKHPAMAIAGWPAFATATSATRSPTEFPHASTVKPRKAAGSFRSSPRTARQLRS 60

Query: 61  SPAVVEIQNTLMTNAASTTGTCSVFGGSVSMTKCRIAREELAKSTTNQRGKCVFGKRKAM 120
           SPA VEIQNTL+TNA +T G CSV G S S  KCRIA+E++A+ST NQRGK V   RK +
Sbjct: 61  SPATVEIQNTLITNAITTAGICSVLGASFSTMKCRIAKEQVAQSTMNQRGKWVSESRKEI 120

Query: 121 G 122
           G
Sbjct: 121 G 121

BLAST of HG10007102 vs. NCBI nr
Match: EMS64927.1 (hypothetical protein TRIUR3_21786 [Triticum urartu])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-21
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 1   MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSS 60
           MLNIGPAK PA+A  GWP  A ATSATRSPTEFP A TV PS A G    TP AARQF S
Sbjct: 54  MLNIGPAKQPAMAIVGWPFLASATSATRSPTEFPHAKTVMPSIAGGRSIITPIAARQFRS 113

Query: 61  SPAVVEIQNTLMTNAASTTGTCSVFGGSVSMTKCRIAREELAKSTTNQRGK 112
           SPA+VEIQ TL+TN        SV G S S  K   A+++L +STT+QRGK
Sbjct: 114 SPAMVEIQKTLITNDMRVLAMLSVSGDSFSKRKWDRAKQKLTRSTTDQRGK 164

BLAST of HG10007102 vs. NCBI nr
Match: EEE51653.1 (hypothetical protein OsJ_32965 [Oryza sativa Japonica Group] >KAB8114225.1 hypothetical protein EE612_053485 [Oryza sativa] >BAT12682.1 Os11g0148101 [Oryza sativa Japonica Group])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 60/100 (60.00%), Postives = 66/100 (66.00%), Query Frame = 0

Query: 12  IASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSSSPAVVEIQNTL 71
           +A  GWP FA+ATSATRSPTEFPQA TV PS A G    TP AARQF SSPA+VEIQ TL
Sbjct: 1   MAIVGWPDFAKATSATRSPTEFPQAKTVMPSIAGGKSIMTPIAARQFRSSPAMVEIQKTL 60

Query: 72  MTNAASTTGTCSVFGGSVSMTKCRIAREELAKSTTNQRGK 112
           +T         SV G S S  K   A+E L KSTT+Q GK
Sbjct: 61  ITKEIVVLAMFSVIGASFSKMKWDRAKEMLTKSTTDQMGK 100

BLAST of HG10007102 vs. NCBI nr
Match: ERN12333.1 (hypothetical protein AMTR_s00025p00068280 [Amborella trichopoda])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-06
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 1  MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQAST 39
          +LN+GPAKHPA A  GWPA A ATSATRSPTEFPQA T
Sbjct: 29 ILNMGPAKHPATAMAGWPALATATSATRSPTEFPQART 66

BLAST of HG10007102 vs. ExPASy TrEMBL
Match: A0A3Q7EN33 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 6.3e-38
Identity = 95/154 (61.69%), Postives = 105/154 (68.18%), Query Frame = 0

Query: 1   MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSS 60
           MLNIGPAKHPA+A  GWPAFA ATSATRSPTEFP ASTV P +AAGS RS+PR ARQ  S
Sbjct: 1   MLNIGPAKHPAMAMAGWPAFATATSATRSPTEFPHASTVKPRKAAGSFRSSPRTARQLRS 60

Query: 61  SPAVVEIQNTLMTNAASTTGTCSVFGGSVSMTKCRIAREELAKSTTNQRGKCVFGKRKAM 120
           SPA VEIQNTL+TNA +T G CSV G S S  KC  A+E +A+ST NQRGK         
Sbjct: 61  SPATVEIQNTLITNAITTAGICSVLGASFSTMKCTTAKEHVAQSTMNQRGK--------- 120

Query: 121 GWLNDMNELQAYRRAMGQRQIFADVKNLLHSEGA 155
            W N        RR  GQR +  D +NL HSEGA
Sbjct: 121 -WEN--------RRRRGQRAMLEDKQNLFHSEGA 136

BLAST of HG10007102 vs. ExPASy TrEMBL
Match: A0A7C9EDU6 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.9e-24
Identity = 65/92 (70.65%), Postives = 71/92 (77.17%), Query Frame = 0

Query: 1   MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSS 60
           MLN+GPAKHPAIA+ GWPAFA ATSATRSPTEFP ASTVSP  A G LR  P AARQ  S
Sbjct: 11  MLNMGPAKHPAIANAGWPAFATATSATRSPTEFPHASTVSPRIAGGKLRRVPSAARQLRS 70

Query: 61  SPAVVEIQNTLMTNAASTTGTCSVFGGSVSMT 93
           SPA ++IQ TL+TNA  T G CS+ GGS S T
Sbjct: 71  SPATLDIQKTLITNARRTMGICSLLGGSFSTT 102

BLAST of HG10007102 vs. ExPASy TrEMBL
Match: A0A7C9ECH5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 64/92 (69.57%), Postives = 70/92 (76.09%), Query Frame = 0

Query: 1   MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSS 60
           MLN+GPAKHPAIA+ GWPAFA ATSATRSPTEFP ASTV P  A G LR  P AARQ  S
Sbjct: 11  MLNMGPAKHPAIANAGWPAFATATSATRSPTEFPHASTVRPRIAGGKLRRVPSAARQLRS 70

Query: 61  SPAVVEIQNTLMTNAASTTGTCSVFGGSVSMT 93
           SPA ++IQ TL+TNA  T G CS+ GGS S T
Sbjct: 71  SPATLDIQKTLITNARRTMGICSLLGGSFSTT 102

BLAST of HG10007102 vs. ExPASy TrEMBL
Match: M7ZXX9 (Uncharacterized protein OS=Triticum urartu OX=4572 GN=TRIUR3_21786 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.3e-22
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 1   MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSS 60
           MLNIGPAK PA+A  GWP  A ATSATRSPTEFP A TV PS A G    TP AARQF S
Sbjct: 54  MLNIGPAKQPAMAIVGWPFLASATSATRSPTEFPHAKTVMPSIAGGRSIITPIAARQFRS 113

Query: 61  SPAVVEIQNTLMTNAASTTGTCSVFGGSVSMTKCRIAREELAKSTTNQRGK 112
           SPA+VEIQ TL+TN        SV G S S  K   A+++L +STT+QRGK
Sbjct: 114 SPAMVEIQKTLITNDMRVLAMLSVSGDSFSKRKWDRAKQKLTRSTTDQRGK 164

BLAST of HG10007102 vs. ExPASy TrEMBL
Match: M8AUH5 (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_32249 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.3e-22
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 1   MLNIGPAKHPAIASKGWPAFARATSATRSPTEFPQASTVSPSRAAGSLRSTPRAARQFSS 60
           MLNIGPAK PA+A  GWP  A ATSATRSPTEFP A TV PS A G    TP AARQF S
Sbjct: 54  MLNIGPAKQPAMAIVGWPFLANATSATRSPTEFPHAKTVMPSIAGGRSIITPIAARQFRS 113

Query: 61  SPAVVEIQNTLMTNAASTTGTCSVFGGSVSMTKCRIAREELAKSTTNQRGK 112
           SPA+VEIQ TL+TN        SV G S S  K   A+++L +STT+QRGK
Sbjct: 114 SPAMVEIQKTLITNDMRVLAMFSVSGDSFSKRKWDRAKQKLTRSTTDQRGK 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG5626191.15.4e-3671.07hypothetical protein H5410_011409 [Solanum commersonii][more]
EMS64927.11.3e-2161.26hypothetical protein TRIUR3_21786 [Triticum urartu][more]
EEE51653.11.3e-1660.00hypothetical protein OsJ_32965 [Oryza sativa Japonica Group] >KAB8114225.1 hypot... [more]
ERN12333.12.6e-0678.95hypothetical protein AMTR_s00025p00068280 [Amborella trichopoda][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A3Q7EN336.3e-3861.69Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
A0A7C9EDU63.9e-2470.65Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9ECH51.5e-2369.57Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
M7ZXX96.3e-2261.26Uncharacterized protein OS=Triticum urartu OX=4572 GN=TRIUR3_21786 PE=4 SV=1[more]
M8AUH56.3e-2261.26Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_32249 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007102.1HG10007102.1mRNA