HG10007098 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007098
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRoot phototropism protein 3-like isoform X1
LocationChr10: 1217458 .. 1217991 (-)
RNA-Seq ExpressionHG10007098
SyntenyHG10007098
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGAAAAAGAAGAGATTATTAATACCATTTATGGAGGTAGTAACTATTGGCCATATCGGATGAAGTTGACGACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCAGAAACGAAGCAATTCGAGGAACTGATTTTGAAGAATATGAATGAACGAAGCTATAGAGAATTGGTTGAGATGATCCCTATTGAAATATCAATCTATGATGTTGATATTTGTGAAACTTTTAAGGTGAAGTTGGTGAAAAAAGAGGCATTTTGGTTTGAACCATTGCCTCTGGCTGGTGAGAAGTCAAAGAAAGATAAGTTGTATTCTCATTCCACTGCAAAAGTGAGTGGCAAGTCCTATAGTAATAAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGTCACATCATAAAGAAACGGGGTCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAACGATAGATCGGTTTGATTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTATACAACTTGATGATCTAA

mRNA sequence

ATGCAGGAAAAAGAAGAGATTATTAATACCATTTATGGAGGTAGTAACTATTGGCCATATCGGATGAAGTTGACGACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCAGAAACGAAGCAATTCGAGGAACTGATTTTGAAGAATATGAATGAACGAAGCTATAGAGAATTGGTTGAGATGATCCCTATTGAAATATCAATCTATGATGTTGATATTTGTGAAACTTTTAAGGTGAAGTTGGTGAAAAAAGAGGCATTTTGGTTTGAACCATTGCCTCTGGCTGGTGAGAAGTCAAAGAAAGATAAGTTGTATTCTCATTCCACTGCAAAAGTGAGTGGCAAGTCCTATAGTAATAAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGTCACATCATAAAGAAACGGGGTCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAACGATAGATCGGTTTGATTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTATACAACTTGATGATCTAA

Coding sequence (CDS)

ATGCAGGAAAAAGAAGAGATTATTAATACCATTTATGGAGGTAGTAACTATTGGCCATATCGGATGAAGTTGACGACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCAGAAACGAAGCAATTCGAGGAACTGATTTTGAAGAATATGAATGAACGAAGCTATAGAGAATTGGTTGAGATGATCCCTATTGAAATATCAATCTATGATGTTGATATTTGTGAAACTTTTAAGGTGAAGTTGGTGAAAAAAGAGGCATTTTGGTTTGAACCATTGCCTCTGGCTGGTGAGAAGTCAAAGAAAGATAAGTTGTATTCTCATTCCACTGCAAAAGTGAGTGGCAAGTCCTATAGTAATAAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGTCACATCATAAAGAAACGGGGTCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAACGATAGATCGGTTTGATTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTATACAACTTGATGATCTAA

Protein sequence

MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVEMIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNKEKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLMI
Homology
[Close]
BLAST of HG10007098 vs. NCBI nr
Match: KAA0050878.1 (root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 5.6e-81
Identity = 153/177 (86.44%), Postives = 166/177 (93.79%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+ +T+YGGSNYWPYRMKLTTDQLRWDSLKISE+KQFEEL+ KNMNE SYR+L E
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKQFEELLSKNMNEGSYRDLAE 641

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIE+SIYDVDICETF+VKLVKKEAFWFEPLPL GEKSKKDK  SHSTAK++GKSY  K
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSY--K 701

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLMI 178
           EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSK +DRFDFSVLSSPRLSL NLMI
Sbjct: 702 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756

[Close]
BLAST of HG10007098 vs. NCBI nr
Match: TYK10230.1 (root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80
Identity = 152/177 (85.88%), Postives = 166/177 (93.79%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+ +T+YGGSNYWPYRMKLTTDQLRWDSLKISE+K+FEEL+ KNMNE SYR+L E
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 641

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIE+SIYDVDICETF+VKLVKKEAFWFEPLPL GEKSKKDK  SHSTAK++GKSY  K
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSY--K 701

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLMI 178
           EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSK +DRFDFSVLSSPRLSL NLMI
Sbjct: 702 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756

[Close]
BLAST of HG10007098 vs. NCBI nr
Match: KGN66088.1 (hypothetical protein Csa_007428 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 2.8e-80
Identity = 153/177 (86.44%), Postives = 165/177 (93.22%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+ +TIYGGSNYWPYRMKLTTDQLRWDSLKISE K+FEEL+ KNMNE SYR+L E
Sbjct: 16  MKDKEELASTIYGGSNYWPYRMKLTTDQLRWDSLKISEPKEFEELLSKNMNEGSYRDLAE 75

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIE+SIYDVDICETFKVKLVKKEAFWFEPLPL GEKSKKDKL SH+TAK SGKS+  K
Sbjct: 76  MIPIEVSIYDVDICETFKVKLVKKEAFWFEPLPLVGEKSKKDKLCSHATAKSSGKSH--K 135

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLMI 178
           EKKEFVYSIEPFRHIIKKRGLDYQQEIG RWSGSK++DRFDFSVLSSPRLSL NLMI
Sbjct: 136 EKKEFVYSIEPFRHIIKKRGLDYQQEIGFRWSGSKSMDRFDFSVLSSPRLSLNNLMI 190

[Close]
BLAST of HG10007098 vs. NCBI nr
Match: KAG6590385.1 (hypothetical protein SDJN03_15808, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.7 bits (657), Expect = 7.4e-65
Identity = 128/176 (72.73%), Postives = 145/176 (82.39%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+I+ IYGG NYWPYRMKL+TD+LRWDSLKISE  +FEE++L+NMNE SYR+L E
Sbjct: 150 MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEGTEFEEMMLRNMNEGSYRDLNE 209

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIEISI+DVDICET+KVKLVKKEAFWFEPLPL GEKS K                  K
Sbjct: 210 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSSK------------------K 269

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLM 177
            +  FVYSIEPFRHI+KKRGLDY QEIGLRWSGSKTIDRFDFSVLSS RLS+YNL+
Sbjct: 270 YQSSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSVLSSSRLSVYNLI 307

[Close]
BLAST of HG10007098 vs. NCBI nr
Match: XP_022961362.1 (uncharacterized protein LOC111461952 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 9.7e-65
Identity = 127/176 (72.16%), Postives = 145/176 (82.39%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+I+ IYGG NYWPYRMKL+TD+LRWDSLKISE  +FEE++L+NMNE SYR+L E
Sbjct: 82  MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEGTEFEEMMLRNMNEGSYRDLNE 141

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIEISI+DVDICET+KVKLVKKEAFWFEPLPL GEKS K                  K
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSSK------------------K 201

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLM 177
            +  FVYSIEPFRHI+KKRGLDY QEIGLRWSGSKTIDRFDFS+LSS RLS+YNL+
Sbjct: 202 YQSSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSILSSSRLSVYNLI 239

[Close]
BLAST of HG10007098 vs. ExPASy TrEMBL
Match: A0A5A7U6J2 (Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00030 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81
Identity = 153/177 (86.44%), Postives = 166/177 (93.79%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+ +T+YGGSNYWPYRMKLTTDQLRWDSLKISE+KQFEEL+ KNMNE SYR+L E
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKQFEELLSKNMNEGSYRDLAE 641

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIE+SIYDVDICETF+VKLVKKEAFWFEPLPL GEKSKKDK  SHSTAK++GKSY  K
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSY--K 701

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLMI 178
           EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSK +DRFDFSVLSSPRLSL NLMI
Sbjct: 702 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756

[Close]
BLAST of HG10007098 vs. ExPASy TrEMBL
Match: A0A5D3CFT9 (Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003770 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.1e-81
Identity = 152/177 (85.88%), Postives = 166/177 (93.79%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+ +T+YGGSNYWPYRMKLTTDQLRWDSLKISE+K+FEEL+ KNMNE SYR+L E
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 641

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIE+SIYDVDICETF+VKLVKKEAFWFEPLPL GEKSKKDK  SHSTAK++GKSY  K
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSY--K 701

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLMI 178
           EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSK +DRFDFSVLSSPRLSL NLMI
Sbjct: 702 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756

[Close]
BLAST of HG10007098 vs. ExPASy TrEMBL
Match: A0A0A0LWG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570130 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.4e-80
Identity = 153/177 (86.44%), Postives = 165/177 (93.22%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+ +TIYGGSNYWPYRMKLTTDQLRWDSLKISE K+FEEL+ KNMNE SYR+L E
Sbjct: 16  MKDKEELASTIYGGSNYWPYRMKLTTDQLRWDSLKISEPKEFEELLSKNMNEGSYRDLAE 75

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIE+SIYDVDICETFKVKLVKKEAFWFEPLPL GEKSKKDKL SH+TAK SGKS+  K
Sbjct: 76  MIPIEVSIYDVDICETFKVKLVKKEAFWFEPLPLVGEKSKKDKLCSHATAKSSGKSH--K 135

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLMI 178
           EKKEFVYSIEPFRHIIKKRGLDYQQEIG RWSGSK++DRFDFSVLSSPRLSL NLMI
Sbjct: 136 EKKEFVYSIEPFRHIIKKRGLDYQQEIGFRWSGSKSMDRFDFSVLSSPRLSLNNLMI 190

[Close]
BLAST of HG10007098 vs. ExPASy TrEMBL
Match: A0A6J1HA02 (uncharacterized protein LOC111461952 OS=Cucurbita moschata OX=3662 GN=LOC111461952 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.7e-65
Identity = 127/176 (72.16%), Postives = 145/176 (82.39%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+I+ IYGG NYWPYRMKL+TD+LRWDSLKISE  +FEE++L+NMNE SYR+L E
Sbjct: 82  MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEGTEFEEMMLRNMNEGSYRDLNE 141

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIEISI+DVDICET+KVKLVKKEAFWFEPLPL GEKS K                  K
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSSK------------------K 201

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLM 177
            +  FVYSIEPFRHI+KKRGLDY QEIGLRWSGSKTIDRFDFS+LSS RLS+YNL+
Sbjct: 202 YQSSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSILSSSRLSVYNLI 239

[Close]
BLAST of HG10007098 vs. ExPASy TrEMBL
Match: A0A6J1HUG6 (uncharacterized protein LOC111467916 OS=Cucurbita maxima OX=3661 GN=LOC111467916 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 6.1e-65
Identity = 128/176 (72.73%), Postives = 144/176 (81.82%), Query Frame = 0 

Query: 1   MQEKEEIINTIYGGSNYWPYRMKLTTDQLRWDSLKISETKQFEELILKNMNERSYRELVE 60
           M++KEE+I+ IYGG NYWPYRMKL+TD+LRWDSLKISE  +FEE++L+NMNE SYR+L E
Sbjct: 82  MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEDTEFEEMMLRNMNEGSYRDLNE 141

Query: 61  MIPIEISIYDVDICETFKVKLVKKEAFWFEPLPLAGEKSKKDKLYSHSTAKVSGKSYSNK 120
           MIPIEISI+DVDICET+KVKLVKKEAFWFEPLPL GEKSK                   K
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSK-------------------K 201

Query: 121 EKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKTIDRFDFSVLSSPRLSLYNLM 177
            +  FVYSIEPFRHI+KKRGLDY QEIGLRWSGSKTIDRFDFSVLSS RLSLY L+
Sbjct: 202 YQSSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSVLSSSRLSLYTLI 238

The following BLAST results are available for this feature:
BLAST of HG10007098 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050878.15.6e-8186.44root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa][more]
TYK10230.11.3e-8085.88root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa][more]
KGN66088.12.8e-8086.44hypothetical protein Csa_007428 [Cucumis sativus][more]
KAG6590385.17.4e-6572.73hypothetical protein SDJN03_15808, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022961362.19.7e-6572.16uncharacterized protein LOC111461952 [Cucurbita moschata][more]
BLAST of HG10007098 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10007098 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U6J22.7e-8186.44Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3CFT96.1e-8185.88Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0LWG51.4e-8086.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570130 PE=4 SV=1[more]
A0A6J1HA024.7e-6572.16uncharacterized protein LOC111461952 OS=Cucurbita moschata OX=3662 GN=LOC1114619... [more]
A0A6J1HUG66.1e-6572.73uncharacterized protein LOC111467916 OS=Cucurbita maxima OX=3661 GN=LOC111467916... [more]
BLAST of HG10007098 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007098.1HG10007098.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination