HG10007084 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007084
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nuclear transcription factor Y subunit B-4
Location	Chr10: 1114397 .. 1114765 (+)
RNA-Seq Expression	HG10007084
Synteny	HG10007084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGACCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAATGAAGCAGCACAAAGATGTCACCAAGAGAATCGAAGAACTCTCAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTTTGCTGAAATTTCTTCCAAGTACTTGCTTAAGTTTAGGGAAGTTGAGAGAATCAAGGCTCATCAATATGAATGCAAAATTACTCAACAACTTCAAGAAGAAGAAGATGAAGATGATGAATGA

mRNA sequence

ATGGGAGACCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAATGAAGCAGCACAAAGATGTCACCAAGAGAATCGAAGAACTCTCAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTTTGCTGAAATTTCTTCCAAGTACTTGCTTAAGTTTAGGGAAGTTGAGAGAATCAAGGCTCATCAATATGAATGCAAAATTACTCAACAACTTCAAGAAGAAGAAGATGAAGATGATGAATGA

Coding sequence (CDS)

ATGGGAGACCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAATGAAGCAGCACAAAGATGTCACCAAGAGAATCGAAGAACTCTCAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTTTGCTGAAATTTCTTCCAAGTACTTGCTTAAGTTTAGGGAAGTTGAGAGAATCAAGGCTCATCAATATGAATGCAAAATTACTCAACAACTTCAAGAAGAAGAAGATGAAGATGATGAATGA

Protein sequence

MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDDE

Homology

[Close]

BLAST of HG10007084 vs. NCBI nr
Match: KAA0050890.1 (nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 5.3e-46
Identity = 95/119 (79.83%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 4   HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENR 63
           +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDDE 123
           RTLNGDDICWAF S GLDN+AE+ +KYLLK+REVERIK  +Y+CKITQ+L  ++D+D E
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLLPQDDDDKE 123

[Close]

BLAST of HG10007084 vs. NCBI nr
Match: XP_008451142.1 (PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo] >TYK10242.1 nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 3.4e-45
Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 4   HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENR 63
           +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDDE 123
           RTLNGDDICWAF S GLDN+AE+ +KYL K+REVERIK  +Y+CKITQ+L  ++D+D E
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDDDKE 123

[Close]

BLAST of HG10007084 vs. NCBI nr
Match: XP_022961414.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita moschata])

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-40
Identity = 87/119 (73.11%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQ 60
           MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH+
Sbjct: 1   MGENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHK 60

Query: 61  ENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDE 120
           +NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R+VERI A Q++  I  + Q+ + E
Sbjct: 61  DNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQKHDQE 117

[Close]

BLAST of HG10007084 vs. NCBI nr
Match: KAG6590402.1 (Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-40
Identity = 87/122 (71.31%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQ 60
           MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH+
Sbjct: 1   MGENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHK 60

Query: 61  ENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDED 120
           +NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R+VERI A Q++  I  + Q+ + E 
Sbjct: 61  DNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQKHDQEQ 120

Query: 121 DE 123
           ++
Sbjct: 121 EQ 120

[Close]

BLAST of HG10007084 vs. NCBI nr
Match: XP_022968852.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 5.7e-40
Identity = 87/122 (71.31%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQ 60
           MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH+
Sbjct: 1   MGENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHK 60

Query: 61  ENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDED 120
           +NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R++ERI A Q++  I ++ QE   E 
Sbjct: 61  DNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINA-QFKTNIAREQQEHGQER 120

Query: 121 DE 123
           ++
Sbjct: 121 EQ 120

[Close]

BLAST of HG10007084 vs. ExPASy Swiss-Prot
Match: O04027 (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 7   DEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTL 66
           DE   LPIANVGR+MK+ILP  AKISKEAK+T+QECA EFISFVT EA+++CH+ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 67  NGDDICWAFGSYGLDNFAEISSKYLLKFREVER 100
           NGDDI WA  + GLDN+A+   ++L K+RE ER
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAER 95

[Close]

BLAST of HG10007084 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-27
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANVGRIMK ILP  AK+SKEAK+TMQEC +EFISFVT EA+ +CH+E R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVERIKAHQY 106
           CWA  + G D++A    KYL ++R +E  K + +
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHH 149

[Close]

BLAST of HG10007084 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-24
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANV RIMKK LP  AKISK+AK+TMQEC +EFISFVT EA+ +C +E R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVE 99
            WA  + G +++ E    YL +FRE+E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of HG10007084 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-24
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANV RIMKK LP  AKISK+AK+T+QEC +EFISF+T EA+ +C +E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVE 99
            WA  + G +++ E    YL K+REVE
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVE 112

[Close]

BLAST of HG10007084 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-24
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 3   DHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQEN 62
           ++N ++   LPIANVGRIMKK+LP   KISK+AK+T+QEC +EFISFVT EA+ +C +E 
Sbjct: 32  NNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREK 91

Query: 63  RRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH----QYECKITQQLQEE 117
           R+T+NGDDI WA  + G +++      YL K+R+ E  K +    Q + +  QQ+Q++
Sbjct: 92  RKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQ 149

[Close]

BLAST of HG10007084 vs. ExPASy TrEMBL
Match: A0A5A7U6S7 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00150 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.6e-46
Identity = 95/119 (79.83%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 4   HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENR 63
           +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDDE 123
           RTLNGDDICWAF S GLDN+AE+ +KYLLK+REVERIK  +Y+CKITQ+L  ++D+D E
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLLPQDDDDKE 123

[Close]

BLAST of HG10007084 vs. ExPASy TrEMBL
Match: A0A5D3CG76 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003890 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45
Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 4   HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENR 63
           +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDDE 123
           RTLNGDDICWAF S GLDN+AE+ +KYL K+REVERIK  +Y+CKITQ+L  ++D+D E
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDDDKE 123

[Close]

BLAST of HG10007084 vs. ExPASy TrEMBL
Match: A0A1S3BRX1 (nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC103492518 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45
Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 4   HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENR 63
           +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDDE 123
           RTLNGDDICWAF S GLDN+AE+ +KYL K+REVERIK  +Y+CKITQ+L  ++D+D E
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDDDKE 123

[Close]

BLAST of HG10007084 vs. ExPASy TrEMBL
Match: A0A6J1HDY6 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN=LOC111461996 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 87/119 (73.11%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQ 60
           MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH+
Sbjct: 1   MGENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHK 60

Query: 61  ENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDE 120
           +NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R+VERI A Q++  I  + Q+ + E
Sbjct: 61  DNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQKHDQE 117

[Close]

BLAST of HG10007084 vs. ExPASy TrEMBL
Match: A0A6J1HUN8 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=LOC111467987 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.7e-40
Identity = 87/122 (71.31%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQ 60
           MG++NGDE L+LPIANVGR+MKKILPQKAKISKEAK TMQECA EFISFVT+EAA++CH+
Sbjct: 1   MGENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHK 60

Query: 61  ENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDED 120
           +NRRTLNGDDICWAFGS+GLDN+AE S+KYLLK+R++ERI A Q++  I ++ QE   E 
Sbjct: 61  DNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINA-QFKTNIAREQQEHGQER 120

Query: 121 DE 123
           ++
Sbjct: 121 EQ 120

[Close]

BLAST of HG10007084 vs. TAIR 10
Match: AT1G09030.1 (nuclear factor Y, subunit B4 )

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-30
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 7   DEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTL 66
           DE   LPIANVGR+MK+ILP  AKISKEAK+T+QECA EFISFVT EA+++CH+ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 67  NGDDICWAFGSYGLDNFAEISSKYLLKFREVER 100
           NGDDI WA  + GLDN+A+   ++L K+RE ER
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAER 95

[Close]

BLAST of HG10007084 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-28
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANVGRIMK ILP  AK+SKEAK+TMQEC +EFISFVT EA+ +CH+E R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVERIKAHQY 106
           CWA  + G D++A    KYL ++R +E  K + +
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHH 149

[Close]

BLAST of HG10007084 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANV RIMKK LP  AKISK+AK+TMQEC +EFISFVT EA+ +C +E R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVE 99
            WA  + G +++ E    YL +FRE+E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of HG10007084 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 111.3 bits (277), Expect = 5.5e-25
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 3   DHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQEN 62
           ++N ++   LPIANVGRIMKK+LP   KISK+AK+T+QEC +EFISFVT EA+ +C +E 
Sbjct: 32  NNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREK 91

Query: 63  RRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH----QYECKITQQLQEE 117
           R+T+NGDDI WA  + G +++      YL K+R+ E  K +    Q + +  QQ+Q++
Sbjct: 92  RKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQ 149

[Close]

BLAST of HG10007084 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 111.3 bits (277), Expect = 5.5e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANV RIMKK LP  AKISK+AK+T+QEC +EFISF+T EA+ +C +E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVE 99
            WA  + G +++ E    YL K+REVE
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVE 112

The following BLAST results are available for this feature:

BLAST of HG10007084 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050890.1	5.3e-46	79.83	nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]	[more]
XP_008451142.1	3.4e-45	78.99	PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo] >TYK10242.1...	[more]
XP_022961414.1	3.3e-40	73.11	nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]	[more]
KAG6590402.1	4.3e-40	71.31	Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subs...	[more]
XP_022968852.1	5.7e-40	71.31	nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]	[more]

BLAST of HG10007084 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04027	2.7e-29	65.59	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O82248	2.6e-27	60.64	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	2.7e-24	59.77	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	7.7e-24	58.62	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SIT9	7.7e-24	47.46	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of HG10007084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6S7	2.6e-46	79.83	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CG76	1.7e-45	78.99	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BRX1	1.7e-45	78.99	nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC1034925...	[more]
A0A6J1HDY6	1.6e-40	73.11	nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HUN8	2.7e-40	71.31	nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10007084 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09030.1	2.0e-30	65.59	nuclear factor Y, subunit B4	[more]
AT2G47810.1	1.8e-28	60.64	nuclear factor Y, subunit B5	[more]
AT5G47640.1	1.9e-25	59.77	nuclear factor Y, subunit B2	[more]
AT2G13570.1	5.5e-25	47.46	nuclear factor Y, subunit B7	[more]
AT4G14540.1	5.5e-25	58.62	nuclear factor Y, subunit B3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 77..95 score: 23.92 coord: 39..57 score: 42.7 coord: 58..76 score: 27.87
None	No IPR available	PANTHER	PTHR11064:SF147	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4-LIKE	coord: 9..119
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 11..74 e-value: 6.3E-26 score: 90.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..122 e-value: 3.1E-36 score: 126.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 11..108
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 9..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007084.1	HG10007084.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding