HG10007072 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007072
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionER membrane protein complex subunit 6
LocationChr10: 989745 .. 993216 (+)
RNA-Seq ExpressionHG10007072
SyntenyHG10007072
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGGTTTTTCGATGCTTCAAAGAACTTTACTTGCTTGCTGATACCAATTGTCTTTTATTTCCTCCTGTATCGAAAGTAGTAGAATCCTATCAATTTTCTTAGAATTGGAATCCTTCCGTGACAGACCTTTTCTGTTTCTAGTTCTATCCTCTTAATTAGCAGCTTATGTAACTGTAGATTTAATTGGTTGACCTAAAATTTTAATGAGTCCTGAGCACTGTGCGACGGAGACTGATACAATTCAATTTCTCGGGAGTGTTTGCATTCAAATTGAGTTGCTACAAATATCATATTATGAATTTGTTTTTCTTTTGAGTTTTGTGAATTTAGATCGTAAACTTCTATTATCTTTTGCAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGGTATGCAGCCTCTGCCCTTATATTTTAGATTGGACGAATTAATAAGTAATTTGAATTTTCAGATCTAATGATTCTAGGGTTTCTAAGTTACCAACCCTTTCTTGTTAATTGCATACGTTTGTTCTGTATTTACTATTTAGAAGAATTGAAGAAATTAGTTACAACTGGTATTTTCACCCACTTCACTCTCCTGCTTCTACTCCTGGAATATACAAGTTTGGAATCAAAGGAGAAGACAGGTCACAGTACGATCTTCAATGTTATCGTGCTGGAGGCAAGTCGAAGAAAAGACAGTACAATTCTATTTCTTTTAGAAGGCAGTATGATGCGAGAAGAGGGAAGGCCCAATTCTAAGTTGAATGTTCTTTTAACCACCTTGGGATCCCCTTTAGGGTGATTTCTTATCCTCCTGGCTAGGCTTTCATAGATTGTTGATTTTTGAACAATTTTCTCATCTCCTATTAAGGAAAATATAGGAAAATGCAATTCGAATGAGGGTTTACTGAGTATAAGAACTAATGTAGATTTTGAAGAAAGGAAAGATTGTAGTTTAAGGTTATTTCGAAAACCTTGTGATAAGAGATATCTTGGACCCTTGGTGACCAGAAACTTTAAATCTAAATGGATAAATAAATGGGATAACAATGTGAGTTTGTTTGATCATACTGATGGGGAAAGGAAATATAAAATAGATGAACAAGTTGATTTTAGGAAATGGTCCATTTGAGATGTGGAAATGTTAAGGGTTCACTGTACACTTGCAGCAGGATAGAGGTCTCTAGAGCCTTGGGGTCGGATTGGTTTGCAATTCCCACAGTGAAACTTGAATGGCCTGAAGATCTGAGTTTGATAAAATTGAAAAAAAGCGAATAAATCCCGGTCCTTACGTAATCCAATGGGCAACTTGGCTTTATTTCAAGATTGTGCTAGTAAACAATGATTTGATGAAGGTTTTCAGGGAATTCTATGATAGGGGTGGTTTACGGGATGTATTAGTGCTACTCATATTTGCTTAATACCTAACAAGTATGGGGCTATGGACTTTCAGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGGTAAAGCTGTAGGGGTTTGGTTTTGCATGGAGAAGTTAGATTAGTCATTAGTGGTGATTTAAATCCTTCATTATTTTTTCCCATGTTTGCGTGAGAACATAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGTGGGCGTCGGTTATGACTTCCTTTTTTTTTTTGAGGTATGCTTGTATGCTACATTTTTTTCTCAAGGGAAGTTGGTGATTTGTCTAAGAAAAACAGTTGCAACAAATGTAGTCATCATCTAAGTTGGAGTACTGTTTTCTTGCGTAAAGATTTTAGAGGATTAAGACTTGGTAAGTTGCCTGAGAAAAAACATGGCTTTGCTTGCCAAGAGGATATGGAATTTCCGCTGGAAAGCCAAAGGTGGAAGCATTTTGCTGATGGTATAAGAAGTAAATATTGGATTCCTCTGGATAGCATTTGAAGGAACGCATAAGGTGTAGCATGGAAATCAATAGTATATTTCAAATCCTTGGTGGAAGCGTTAGATGTCTCAAAACAAAGAAATGTGAAGAGAATCAAATTTGGGAGGATATTCTTATTAATTTGGTGGTGAGACCTAAGAACAGGGAAGATATTAGGTTTTGGAGTTGAGATTTCAGGATTCTTCACTATTTCCTTCATTATAATTACCTTTGGTTTTGTACCCTAAAAATTATCATAAGTTTTTCTCAAACTAATTTTATTTGTTTATGTTTTATGTATTTTTTTTTTTTTAAAATTATGATTACCATTTCGAATAACGTAAATGAGATATCCTCCTTTCCTTTTCATTGTTTAAAGAAAAGGAGAGAAATCTCCTTTTCCTACACTAATTCTACAGCCTAACATGATAAAGCATATACCCTATCCTTAATTGGTTCGAATCAATTCCAGAATTCTTGAGTTTCCCTAAAGCCCAGATTGATCTCTGATCATCTTTTCGTAGAGACTAGGGACATAATTTTTCTGTTTGACATTAGAAAATGTTTGCTCATTTTCTCAGCATACTATAGATGCTAAAATTAAGAGATTATCTTACACTATATTATTTGTCTTGTGATGACTCATTATTCTTATGTGTTTTGGCATGCAACAACCTATGGGCACTGACCCTTTGTTCTATTTTTGCAGTCGTTCGTGCTTTTCTGGACGTATCCTTTCCATAACTTTATGGTTTATACATAATGTTTGATAGTATACCAATTGCGTGTTTAGGACAATCTTTCAATAGGATAAAAGTATTTTTTGGCTTGCTTAAAATACTTTCAAAATTTTTGAACTTTACACTATTAAAACATTCTGAAGTGGTTTTTTTTTTTTTTTTTTTTTTCTTCCTCTTCAAGAAAACACTGAATGATACTTTCTTTAAGAGGTAGTTCTCAAATACATACCCACAGAGTATTTCTAATTTACTTTTATTTCACATTTCCTCCAAATTCTTGCTTCTAGAAATTGTATGCTGACCGTGCTTTTCTTAACATGAAAAAGTTTCGCATACGACATTGTTCACATATTCTGAGTCCAAATGCTGGCAGGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

mRNA sequence

ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAAATTGTATGCTGACCGTGCTTTTCTTAACATGAAAAAGTTTCGCATACGACATTGTTCACATATTCTGAGTCCAAATGCTGGCAGGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Coding sequence (CDS)

ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAAATTGTATGCTGACCGTGCTTTTCTTAACATGAAAAAGTTTCGCATACGACATTGTTCACATATTCTGAGTCCAAATGCTGGCAGGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Protein sequence

MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMKLYADRAFLNMKKFRIRHCSHILSPNAGRNSNSRVAAAFCTIRLETGNSKQ
Homology
[Close]
BLAST of HG10007072 vs. NCBI nr
Match: KAG7029026.1 (ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-42
Identity = 101/121 (83.47%), Postives = 104/121 (85.95%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 58  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 117

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMKLYADRAFLNMKKFRIR 120
           FIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLSGLM       FL+ KK R R
Sbjct: 118 FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFLDWKKVR-R 177

Query: 121 H 122
           H
Sbjct: 178 H 177

[Close]
BLAST of HG10007072 vs. NCBI nr
Match: XP_022137968.1 (ER membrane protein complex subunit 6 [Momordica charantia] >XP_022137969.1 ER membrane protein complex subunit 6 [Momordica charantia])

HSP 1 Score: 182.6 bits (462), Expect = 2.6e-42
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSSAASEKKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           FI YFLVMAITSL LAAKA FS HSYFESWNQILLDGFLSGLM
Sbjct: 61  FILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of HG10007072 vs. NCBI nr
Match: XP_022972030.1 (ER membrane protein complex subunit 6 [Cucurbita maxima] >XP_022972031.1 ER membrane protein complex subunit 6 [Cucurbita maxima] >XP_023539991.1 ER membrane protein complex subunit 6 [Cucurbita pepo subsp. pepo] >XP_023539992.1 ER membrane protein complex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-41
Identity = 95/103 (92.23%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS ASEKKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLSGLM
Sbjct: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of HG10007072 vs. NCBI nr
Match: KAG6597582.1 (ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.7 bits (452), Expect = 3.8e-41
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 49  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 108

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLSGLM
Sbjct: 109 FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 151

[Close]
BLAST of HG10007072 vs. NCBI nr
Match: XP_022937062.1 (ER membrane protein complex subunit 6 [Cucurbita moschata] >XP_022937070.1 ER membrane protein complex subunit 6 [Cucurbita moschata])

HSP 1 Score: 178.7 bits (452), Expect = 3.8e-41
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLSGLM
Sbjct: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of HG10007072 vs. ExPASy Swiss-Prot
Match: Q9BV81 (ER membrane protein complex subunit 6 OS=Homo sapiens OX=9606 GN=EMC6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]
BLAST of HG10007072 vs. ExPASy Swiss-Prot
Match: Q9CQW0 (ER membrane protein complex subunit 6 OS=Mus musculus OX=10090 GN=Emc6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]
BLAST of HG10007072 vs. ExPASy Swiss-Prot
Match: Q3ZCG8 (ER membrane protein complex subunit 6 OS=Bos taurus OX=9913 GN=EMC6 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAR 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]
BLAST of HG10007072 vs. ExPASy Swiss-Prot
Match: Q6GLC5 (ER membrane protein complex subunit 6 OS=Xenopus tropicalis OX=8364 GN=emc6 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0 

Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLIGGL 93

[Close]
BLAST of HG10007072 vs. ExPASy Swiss-Prot
Match: Q68EU8 (ER membrane protein complex subunit 6 OS=Xenopus laevis OX=8355 GN=emc6 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-06
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0 

Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLVGGL 93

[Close]
BLAST of HG10007072 vs. ExPASy TrEMBL
Match: A0A6J1CBS9 (ER membrane protein complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111009251 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSSAASEKKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           FI YFLVMAITSL LAAKA FS HSYFESWNQILLDGFLSGLM
Sbjct: 61  FILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of HG10007072 vs. ExPASy TrEMBL
Match: A0A6J1I7D9 (ER membrane protein complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111470685 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 95/103 (92.23%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS ASEKKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLSGLM
Sbjct: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of HG10007072 vs. ExPASy TrEMBL
Match: A0A6J1FFH8 (ER membrane protein complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443473 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLSGLM
Sbjct: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of HG10007072 vs. ExPASy TrEMBL
Match: A0A1S3BQB0 (ER membrane protein complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492162 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.1e-41
Identity = 94/103 (91.26%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ALAAKA FS HSYFES NQILLDGFL GLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLM 103

[Close]
BLAST of HG10007072 vs. ExPASy TrEMBL
Match: A0A0A0LZ06 (ER membrane protein complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_1G569390 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 7.0e-41
Identity = 101/136 (74.26%), Postives = 107/136 (78.68%), Query Frame = 0 

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMKLYADRAFLNMKKFRIR 120
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM          +  +  R
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSF--------VLFWTPR 120

Query: 121 HCSHI------LSPNA 131
           HCS         SPNA
Sbjct: 121 HCSFSSIQRSRFSPNA 128

[Close]
BLAST of HG10007072 vs. TAIR 10
Match: AT5G49540.1 (Rab5-interacting family protein )

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-30
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 8   ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLV 67
           +SEK+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+V
Sbjct: 3   SSEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVV 62

Query: 68  MAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM 104
           M ITS+ L AKA FS+  YF+SWN++L DGFL GLM
Sbjct: 63  MLITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLM 98

The following BLAST results are available for this feature:
BLAST of HG10007072 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029026.11.2e-4283.47ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. ar... [more]
XP_022137968.12.6e-4293.20ER membrane protein complex subunit 6 [Momordica charantia] >XP_022137969.1 ER m... [more]
XP_022972030.12.2e-4192.23ER membrane protein complex subunit 6 [Cucurbita maxima] >XP_022972031.1 ER memb... [more]
KAG6597582.13.8e-4191.26ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. so... [more]
XP_022937062.13.8e-4191.26ER membrane protein complex subunit 6 [Cucurbita moschata] >XP_022937070.1 ER me... [more]
BLAST of HG10007072 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9BV812.2e-0739.02ER membrane protein complex subunit 6 OS=Homo sapiens OX=9606 GN=EMC6 PE=1 SV=1[more]
Q9CQW02.2e-0739.02ER membrane protein complex subunit 6 OS=Mus musculus OX=10090 GN=Emc6 PE=1 SV=1[more]
Q3ZCG83.7e-0739.02ER membrane protein complex subunit 6 OS=Bos taurus OX=9913 GN=EMC6 PE=3 SV=1[more]
Q6GLC51.4e-0640.00ER membrane protein complex subunit 6 OS=Xenopus tropicalis OX=8364 GN=emc6 PE=3... [more]
Q68EU81.8e-0640.00ER membrane protein complex subunit 6 OS=Xenopus laevis OX=8355 GN=emc6 PE=3 SV=... [more]
BLAST of HG10007072 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CBS91.3e-4293.20ER membrane protein complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1I7D91.1e-4192.23ER membrane protein complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC11147068... [more]
A0A6J1FFH81.8e-4191.26ER membrane protein complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443... [more]
A0A1S3BQB03.1e-4191.26ER membrane protein complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492162 PE... [more]
A0A0A0LZ067.0e-4174.26ER membrane protein complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_1G569390... [more]
BLAST of HG10007072 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G49540.13.2e-3066.67Rab5-interacting family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029008Rab5-interacting protein familyPFAMPF07019Rab5ipcoord: 35..103
e-value: 1.2E-14
score: 54.6
IPR008504ER membrane protein complex subunit 6PANTHERPTHR20994UNCHARACTERIZEDcoord: 8..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007072.1HG10007072.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
cellular_component GO:0072546 EMC complex
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane