HG10007039 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007039
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	GATA transcription factor 16-like
Location	Chr10: 640036 .. 641206 (-)
RNA-Seq Expression	HG10007039
Synteny	HG10007039

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATGGATTTGAGGCAAAAGGTCAGAATCACCAGCCCCAAAAGCCCCTTTCAGACGAATCTTTCTTATTTTTTTACTGATTTTCTTAATTAGACTCCTCTGTTTCAGGGACTGTTGCTGCCGGACACTAAATGTTGTGTTGATTGTAAGACAACCAAGACTCCTTTGTGGCGTGGAGGCCCTACTGGACCTAAGGTTCTTCTCTTTCTTTATATTTTCGTTTTTGCTTATGTTTGTCTTGATTTCCTGGGTTTGTTTCTGTTGACAAGATTTGGATTCATTCTCCATTTCTTCTCGACTCTGTTCTAATGTTTTCTTGTTTGATCTTTGCCAGTCTGTTTTTGTTTGATCTTGAGCTTATGAGTTTTGATTCTTGATCTATTTATGGTTTATAAGTTTCCCTTGTAATTGGGTTTCATTAACCTGATCATCGTCTGTTTCTTCTACTGTTTGATTTTGAGCTTTTCTGTTACGATCATGTGTTCTGTTTTGGCACTGAGTTCACTAGAATTTGGGTTTCTCCTCTGTTCATGAAGATGATCCTACTTTTCATTTATGTTCTATTTTTACTGGGTTTCTCCTCTTTTCACTTAGATGATGAGCTTTCCCTTTCATTTACTTTCCTCTCAAATTCTTTGTATGATCTTGAGCCTCTGATTTGGATTTACATTTGTTTTTTTTAGTGGGGTTCTTCTCTGTTTATCAATCTAACCGTCCATTTCTTGTTGGAACTCGAAATCTTTATATTGTCAATTAAACAAACCCCTCTTCCCATTTGGGTTTTTTGCAGTCACTGTGCAATGCATGCGGGATCAGGTTTAGAAAGAGAGGAATATCCACGATAGGAACGAACAGAGGATGTGACAGGAAGAGAGAAGGAGTTCATAACAATGGCTCCTCCACCATGACCACCGTGTCAGCCACCACTTCATCGAGTGAGACAACAGCCACCACCACCTCTGGAGATGGGGATGAGAATTTGGGGGAATGTGGGTCATTGAGGATGAGATTGATGATGGCATCGGAGGAGGAGGTGATGGTGGTGCAGAATTTACCGTCGTCGGTGAAGAAACAGCGTTGTCGACGGCAGAGGAAGCTTGGGGAGGAGGAGAAGCAGGCAGCAGTGTCATTAATGGCGCTGTCATGTGGCTCTCTTTTTGCCTGA

mRNA sequence

ATGGGTTTGATGGATTTGAGGCAAAAGGGACTGTTGCTGCCGGACACTAAATGTTGTGTTGATTGTAAGACAACCAAGACTCCTTTGTGGCGTGGAGGCCCTACTGGACCTAAGTCACTGTGCAATGCATGCGGGATCAGGTTTAGAAAGAGAGGAATATCCACGATAGGAACGAACAGAGGATGTGACAGGAAGAGAGAAGGAGTTCATAACAATGGCTCCTCCACCATGACCACCGTGTCAGCCACCACTTCATCGAGTGAGACAACAGCCACCACCACCTCTGGAGATGGGGATGAGAATTTGGGGGAATGTGGGTCATTGAGGATGAGATTGATGATGGCATCGGAGGAGGAGGTGATGGTGGTGCAGAATTTACCGTCGTCGGTGAAGAAACAGCGTTGTCGACGGCAGAGGAAGCTTGGGGAGGAGGAGAAGCAGGCAGCAGTGTCATTAATGGCGCTGTCATGTGGCTCTCTTTTTGCCTGA

Coding sequence (CDS)

ATGGGTTTGATGGATTTGAGGCAAAAGGGACTGTTGCTGCCGGACACTAAATGTTGTGTTGATTGTAAGACAACCAAGACTCCTTTGTGGCGTGGAGGCCCTACTGGACCTAAGTCACTGTGCAATGCATGCGGGATCAGGTTTAGAAAGAGAGGAATATCCACGATAGGAACGAACAGAGGATGTGACAGGAAGAGAGAAGGAGTTCATAACAATGGCTCCTCCACCATGACCACCGTGTCAGCCACCACTTCATCGAGTGAGACAACAGCCACCACCACCTCTGGAGATGGGGATGAGAATTTGGGGGAATGTGGGTCATTGAGGATGAGATTGATGATGGCATCGGAGGAGGAGGTGATGGTGGTGCAGAATTTACCGTCGTCGGTGAAGAAACAGCGTTGTCGACGGCAGAGGAAGCTTGGGGAGGAGGAGAAGCAGGCAGCAGTGTCATTAATGGCGCTGTCATGTGGCTCTCTTTTTGCCTGA

Protein sequence

MGLMDLRQKGLLLPDTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNRGCDRKREGVHNNGSSTMTTVSATTSSSETTATTTSGDGDENLGECGSLRMRLMMASEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA

Homology

[Close]

BLAST of HG10007039 vs. NCBI nr
Match: XP_038880207.1 (GATA transcription factor 17-like [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 1.0e-68
Identity = 143/166 (86.14%), Postives = 150/166 (90.36%), Query Frame = 0


Query: 1   MGLMDLRQKGLLLPDTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNR 60
           MG+MDLRQKGLLL DTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKR ISTIGTNR
Sbjct: 21  MGMMDLRQKGLLLADTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRRISTIGTNR 80

Query: 61  GCDRKREGVHNNGSSTMTTVSATTSSSETTATTTS----GDGDENLGECGSLRMRLMMAS 120
           G DRKRE VHNNGS+  TTVSATTSS+ TT TTTS    GDGDENLGECGSL MRLMMA 
Sbjct: 81  GYDRKRERVHNNGSTITTTVSATTSSTGTTTTTTSGSGDGDGDENLGECGSLGMRLMMAL 140

Query: 121 EEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
           EEEVMVVQNLPSSVKKQR +R+RKLGEEEKQAAVSLMALSCGS+ +
Sbjct: 141 EEEVMVVQNLPSSVKKQRFQRERKLGEEEKQAAVSLMALSCGSVLS 186

[Close]

BLAST of HG10007039 vs. NCBI nr
Match: XP_011659732.1 (GATA transcription factor 16 [Cucumis sativus] >KGN66031.1 hypothetical protein Csa_006937 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49
Identity = 120/167 (71.86%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 1   MGLMDLRQKGLLLPDTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNR 60
           MG MDL QKGLLL DTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKR IST GTNR
Sbjct: 1   MGFMDLSQKGLLLADTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRRISTRGTNR 60

Query: 61  GCDRKREGVHNNGSSTMTTVSATTSSSE----TTATTTSG-DGDENLGECGSLRMRLMMA 120
             D+KRE V++N SS + TVSATT+SS     TT T++SG DGDEN GECGSLRMRLMM+
Sbjct: 61  R-DKKREKVNDNHSSAVATVSATTTSSSGTTITTTTSSSGVDGDENSGECGSLRMRLMMS 120

Query: 121 SEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
            EE+VMV       VKKQ+ + QRK+GEEEKQAA+SL+ALS  SL +
Sbjct: 121 LEEDVMV-------VKKQQWQWQRKVGEEEKQAAMSLIALSNDSLIS 159

[Close]

BLAST of HG10007039 vs. NCBI nr
Match: XP_008450587.1 (PREDICTED: GATA transcription factor 16-like [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 6.8e-49
Identity = 120/167 (71.86%), Postives = 131/167 (78.44%), Query Frame = 0


Query: 1   MGLMDLRQKGLLLPDTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNR 60
           MG +DL QKGLLL DTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKR I T  TNR
Sbjct: 21  MGFVDLSQKGLLLADTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRKIFTRRTNR 80

Query: 61  -GCDRKREGVHNNGSSTMTTVSATTSSSE---TTATTTSG-DGDENLGECGSLRMRLMMA 120
            G D+KRE V +N SST+  VSATT+SS    TT TTTSG DGDEN GECGS RM++MM 
Sbjct: 81  GGRDKKRERVRDNHSSTVAIVSATTTSSSGTTTTTTTTSGVDGDENSGECGSSRMKIMMG 140

Query: 121 SEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
            EE+VMV       VKK R + QRK+GEEEKQAAVSLMALS GSL +
Sbjct: 141 LEEDVMV-------VKKHRWQWQRKVGEEEKQAAVSLMALSNGSLIS 180

[Close]

BLAST of HG10007039 vs. NCBI nr
Match: TYK10277.1 (GATA transcription factor 16-like [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-45
Identity = 120/186 (64.52%), Postives = 131/186 (70.43%), Query Frame = 0


Query: 1   MGLMDLRQKGLLLPDTKCCVDCKTTKTPLWRGGPTGPK-------------------SLC 60
           MG +DL QKGLLL DTKCCVDCKTTKTPLWRGGPTGPK                   SLC
Sbjct: 1   MGFVDLSQKGLLLADTKCCVDCKTTKTPLWRGGPTGPKEIFISSIKQTSLPIWGFLQSLC 60

Query: 61  NACGIRFRKRGISTIGTNR-GCDRKREGVHNNGSSTMTTVSATTSSSE---TTATTTSG- 120
           NACGIRFRKR I T  TNR G D+KRE V +N SST+  VSATT+SS    TT TTTSG 
Sbjct: 61  NACGIRFRKRKIFTRRTNRGGRDKKRERVRDNHSSTVAIVSATTTSSSGTTTTTTTTSGV 120

Query: 121 DGDENLGECGSLRMRLMMASEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALS 163
           DGDEN GECGS RM++MM  EE+VMV       VKK R + QRK+GEEEKQAAVSLMALS
Sbjct: 121 DGDENSGECGSSRMKIMMGLEEDVMV-------VKKHRWQWQRKVGEEEKQAAVSLMALS 179

[Close]

BLAST of HG10007039 vs. NCBI nr
Match: XP_022135615.1 (GATA transcription factor 16-like isoform X4 [Momordica charantia])

HSP 1 Score: 191.0 bits (484), Expect = 7.8e-45
Identity = 115/173 (66.47%), Postives = 129/173 (74.57%), Query Frame = 0


Query: 1   MGLMDL---RQKGLLLPDT-KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTI 60
           MG+MD+   + K  +  DT K CVDCKTTKTPLWRGGP GPKSLCNACGIRFRKR +STI
Sbjct: 1   MGMMDVLRRKNKERVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVSTI 60

Query: 61  GTNRGCDRKREGVHNNGSSTMTTVSATTSSSETTATTTSGDG-------DENLGECGSLR 120
           GTNRGCDRKRE  H++G ST   +SATTSSS T A   S +G       +E+LGECGSLR
Sbjct: 61  GTNRGCDRKREKAHSHGGSTTAAMSATTSSSATAADAKSNNGGADGEEEEEDLGECGSLR 120

Query: 121 MRLMMASEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
           MRLMMA  EEV+V QN    + KQ  R  RKLGEEE QAAVSLMALSCGS+FA
Sbjct: 121 MRLMMALGEEVVVQQN----ISKQ--RPPRKLGEEE-QAAVSLMALSCGSVFA 166

[Close]

BLAST of HG10007039 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 64/146 (43.84%), Postives = 77/146 (52.74%), Query Frame = 0


Query: 17  KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNRGCDRKREGVHNNGSST 76
           K C DC T+KTPLWRGGP GPKSLCNACGIR RK              KR G        
Sbjct: 36  KTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRK--------------KRRG-------- 95

Query: 77  MTTVSATTSSSETTATTTSGDGDENLGECGSLRMRLMMASEEEVMVVQNLPSSVKKQRCR 136
                  T  ++    ++SG G+   GE  SL+  LM     +        S+V+KQR  
Sbjct: 96  ------GTEDNKKLKKSSSGGGNRKFGE--SLKQSLMDLGIRK-------RSTVEKQR-- 139

Query: 137 RQRKLGEEEKQAAVSLMALSCGSLFA 163
             +KLGEEE QAAV LMALS GS++A
Sbjct: 156 --QKLGEEE-QAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10007039 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-13
Identity = 62/145 (42.76%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 15  DTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNRGCDRKREGVHNNGS 74
           + K C  C T+KTPLWRGGP GPKSLCNACGIR RK+   T+ +NR  D+K++  HN   
Sbjct: 39  EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKR-RTLISNRSEDKKKKS-HNRNP 98

Query: 75  STMTTVSATTSSSETTATTTSGDGDENLGECGSLRMRLMMASEEEVMVVQNLPSSVKKQR 134
                                  GD       SL+ RLM    E +M      S+ + Q 
Sbjct: 99  KF---------------------GD-------SLKQRLMELGREVMM----QRSTAENQ- 145

Query: 135 CRRQRKLGEEEKQAAVSLMALSCGS 160
             R+ KLGEEE QAAV LMALS  S
Sbjct: 159 --RRNKLGEEE-QAAVLLMALSYAS 145

[Close]

BLAST of HG10007039 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-13
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 0


Query: 15  DTK-CCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNRGCDRKREGVHNNG 74
           DTK  CVDC T +TPLWRGGP GPKSLCNACGI+ RK+  + +G      R  E   N  
Sbjct: 39  DTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGM-----RSEEKKKNRK 98

Query: 75  SSTMTTVSATTSSSETTATTTSGDG----DENLGECGSLRMRLMMASEE---------EV 134
           S+    ++    +++        DG    D++   C + R     +++          +V
Sbjct: 99  SNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKV 158

Query: 135 MVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
            V++   S+V+K+R    RKLGEEE+ AAV LMALSC S++A
Sbjct: 159 PVMKR--SAVEKKRL--WRKLGEEER-AAVLLMALSCSSVYA 190

[Close]

BLAST of HG10007039 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 17 KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKR 52
          +CC +CKTTKTP+WRGGPTGPKSLCNACGIR RK+
Sbjct: 26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQ 60

[Close]

BLAST of HG10007039 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-10
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 17  KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRK 51
           + C DC TTKTPLWR GP GPKSLCNACGIR RK
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRK 209

[Close]

BLAST of HG10007039 vs. ExPASy TrEMBL
Match: A0A0A0M1G9 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569090 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.7e-50
Identity = 120/167 (71.86%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 1   MGLMDLRQKGLLLPDTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNR 60
           MG MDL QKGLLL DTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKR IST GTNR
Sbjct: 1   MGFMDLSQKGLLLADTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRRISTRGTNR 60

Query: 61  GCDRKREGVHNNGSSTMTTVSATTSSSE----TTATTTSG-DGDENLGECGSLRMRLMMA 120
             D+KRE V++N SS + TVSATT+SS     TT T++SG DGDEN GECGSLRMRLMM+
Sbjct: 61  R-DKKREKVNDNHSSAVATVSATTTSSSGTTITTTTSSSGVDGDENSGECGSLRMRLMMS 120

Query: 121 SEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
            EE+VMV       VKKQ+ + QRK+GEEEKQAA+SL+ALS  SL +
Sbjct: 121 LEEDVMV-------VKKQQWQWQRKVGEEEKQAAMSLIALSNDSLIS 159

[Close]

BLAST of HG10007039 vs. ExPASy TrEMBL
Match: A0A1S3BQ71 (GATA transcription factor 16-like OS=Cucumis melo OX=3656 GN=LOC103492133 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.3e-49
Identity = 120/167 (71.86%), Postives = 131/167 (78.44%), Query Frame = 0


Query: 1   MGLMDLRQKGLLLPDTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNR 60
           MG +DL QKGLLL DTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKR I T  TNR
Sbjct: 21  MGFVDLSQKGLLLADTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRKIFTRRTNR 80

Query: 61  -GCDRKREGVHNNGSSTMTTVSATTSSSE---TTATTTSG-DGDENLGECGSLRMRLMMA 120
            G D+KRE V +N SST+  VSATT+SS    TT TTTSG DGDEN GECGS RM++MM 
Sbjct: 81  GGRDKKRERVRDNHSSTVAIVSATTTSSSGTTTTTTTTSGVDGDENSGECGSSRMKIMMG 140

Query: 121 SEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
            EE+VMV       VKK R + QRK+GEEEKQAAVSLMALS GSL +
Sbjct: 141 LEEDVMV-------VKKHRWQWQRKVGEEEKQAAVSLMALSNGSLIS 180

[Close]

BLAST of HG10007039 vs. ExPASy TrEMBL
Match: A0A6J1C1I3 (GATA transcription factor 16-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.8e-45
Identity = 115/173 (66.47%), Postives = 129/173 (74.57%), Query Frame = 0


Query: 1   MGLMDL---RQKGLLLPDT-KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTI 60
           MG+MD+   + K  +  DT K CVDCKTTKTPLWRGGP GPKSLCNACGIRFRKR +STI
Sbjct: 1   MGMMDVLRRKNKERVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVSTI 60

Query: 61  GTNRGCDRKREGVHNNGSSTMTTVSATTSSSETTATTTSGDG-------DENLGECGSLR 120
           GTNRGCDRKRE  H++G ST   +SATTSSS T A   S +G       +E+LGECGSLR
Sbjct: 61  GTNRGCDRKREKAHSHGGSTTAAMSATTSSSATAADAKSNNGGADGEEEEEDLGECGSLR 120

Query: 121 MRLMMASEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
           MRLMMA  EEV+V QN    + KQ  R  RKLGEEE QAAVSLMALSCGS+FA
Sbjct: 121 MRLMMALGEEVVVQQN----ISKQ--RPPRKLGEEE-QAAVSLMALSCGSVFA 166

[Close]

BLAST of HG10007039 vs. ExPASy TrEMBL
Match: A0A6J1C5A4 (GATA transcription factor 17-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.8e-45
Identity = 115/173 (66.47%), Postives = 129/173 (74.57%), Query Frame = 0


Query: 1   MGLMDL---RQKGLLLPDT-KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTI 60
           MG+MD+   + K  +  DT K CVDCKTTKTPLWRGGP GPKSLCNACGIRFRKR +STI
Sbjct: 55  MGMMDVLRRKNKERVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVSTI 114

Query: 61  GTNRGCDRKREGVHNNGSSTMTTVSATTSSSETTATTTSGDG-------DENLGECGSLR 120
           GTNRGCDRKRE  H++G ST   +SATTSSS T A   S +G       +E+LGECGSLR
Sbjct: 115 GTNRGCDRKREKAHSHGGSTTAAMSATTSSSATAADAKSNNGGADGEEEEEDLGECGSLR 174

Query: 121 MRLMMASEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
           MRLMMA  EEV+V QN    + KQ  R  RKLGEEE QAAVSLMALSCGS+FA
Sbjct: 175 MRLMMALGEEVVVQQN----ISKQ--RPPRKLGEEE-QAAVSLMALSCGSVFA 220

[Close]

BLAST of HG10007039 vs. ExPASy TrEMBL
Match: A0A6J1C373 (GATA transcription factor 17-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 8.4e-45
Identity = 117/174 (67.24%), Postives = 130/174 (74.71%), Query Frame = 0


Query: 1   MGLMD-LRQKG---LLLPDT-KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGIST 60
           MG+MD LR+K     +  DT K CVDCKTTKTPLWRGGP GPKSLCNACGIRFRKR +ST
Sbjct: 55  MGMMDVLRRKNKVERVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVST 114

Query: 61  IGTNRGCDRKREGVHNNGSSTMTTVSATTSSSETTATTTSGDG-------DENLGECGSL 120
           IGTNRGCDRKRE  H++G ST   +SATTSSS T A   S +G       +E+LGECGSL
Sbjct: 115 IGTNRGCDRKREKAHSHGGSTTAAMSATTSSSATAADAKSNNGGADGEEEEEDLGECGSL 174

Query: 121 RMRLMMASEEEVMVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
           RMRLMMA  EEV+V QN    + KQ  R  RKLGEEE QAAVSLMALSCGS+FA
Sbjct: 175 RMRLMMALGEEVVVQQN----ISKQ--RPPRKLGEEE-QAAVSLMALSCGSVFA 221

[Close]

BLAST of HG10007039 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 64/146 (43.84%), Postives = 77/146 (52.74%), Query Frame = 0


Query: 17  KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNRGCDRKREGVHNNGSST 76
           K C DC T+KTPLWRGGP GPKSLCNACGIR RK              KR G        
Sbjct: 36  KTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRK--------------KRRG-------- 95

Query: 77  MTTVSATTSSSETTATTTSGDGDENLGECGSLRMRLMMASEEEVMVVQNLPSSVKKQRCR 136
                  T  ++    ++SG G+   GE  SL+  LM     +        S+V+KQR  
Sbjct: 96  ------GTEDNKKLKKSSSGGGNRKFGE--SLKQSLMDLGIRK-------RSTVEKQR-- 139

Query: 137 RQRKLGEEEKQAAVSLMALSCGSLFA 163
             +KLGEEE QAAV LMALS GS++A
Sbjct: 156 --QKLGEEE-QAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10007039 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14
Identity = 62/145 (42.76%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 15  DTKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNRGCDRKREGVHNNGS 74
           + K C  C T+KTPLWRGGP GPKSLCNACGIR RK+   T+ +NR  D+K++  HN   
Sbjct: 39  EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKR-RTLISNRSEDKKKKS-HNRNP 98

Query: 75  STMTTVSATTSSSETTATTTSGDGDENLGECGSLRMRLMMASEEEVMVVQNLPSSVKKQR 134
                                  GD       SL+ RLM    E +M      S+ + Q 
Sbjct: 99  KF---------------------GD-------SLKQRLMELGREVMM----QRSTAENQ- 145

Query: 135 CRRQRKLGEEEKQAAVSLMALSCGS 160
             R+ KLGEEE QAAV LMALS  S
Sbjct: 159 --RRNKLGEEE-QAAVLLMALSYAS 145

[Close]

BLAST of HG10007039 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-14
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 0


Query: 15  DTK-CCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNRGCDRKREGVHNNG 74
           DTK  CVDC T +TPLWRGGP GPKSLCNACGI+ RK+  + +G      R  E   N  
Sbjct: 39  DTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGM-----RSEEKKKNRK 98

Query: 75  SSTMTTVSATTSSSETTATTTSGDG----DENLGECGSLRMRLMMASEE---------EV 134
           S+    ++    +++        DG    D++   C + R     +++          +V
Sbjct: 99  SNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKV 158

Query: 135 MVVQNLPSSVKKQRCRRQRKLGEEEKQAAVSLMALSCGSLFA 163
            V++   S+V+K+R    RKLGEEE+ AAV LMALSC S++A
Sbjct: 159 PVMKR--SAVEKKRL--WRKLGEEER-AAVLLMALSCSSVYA 190

[Close]

BLAST of HG10007039 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-14
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 17 KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKR 52
          +CC +CKTTKTP+WRGGPTGPKSLCNACGIR RK+
Sbjct: 26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQ 60

[Close]

BLAST of HG10007039 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 57/163 (34.97%), Postives = 78/163 (47.85%), Query Frame = 0


Query: 17  KCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRGISTIGTNRGCDRKREGVHNNGSST 76
           K CVDC T++TPLWRGGP GPKSLCNACGI+ RK+  + +G  +   + +   +NN    
Sbjct: 37  KTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIKIKSKSNNNLGLE 96

Query: 77  MTTVSATTSSSETTATTTSGDGDENL--GECGSLRMRLMMASEEEVMVVQNLPSSVKK-- 136
              V                 G   +  GE G+++ ++     E      N   +VK+  
Sbjct: 97  SRNVKTGKGEPVNVKIAKCEPGIVKIAKGEPGNVKNKI-KRDPENSSSSNNNKKNVKRVG 156

Query: 137 -----------------QRCRRQRKLGEEEKQAAVSLMALSCG 159
                            ++ R  RKLGEEE+ AAV LMALSCG
Sbjct: 157 RFLDFGFKVPAMKRSAVEKKRLWRKLGEEER-AAVLLMALSCG 197

The following BLAST results are available for this feature:

BLAST of HG10007039 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880207.1	1.0e-68	86.14	GATA transcription factor 17-like [Benincasa hispida]	[more]
XP_011659732.1	1.8e-49	71.86	GATA transcription factor 16 [Cucumis sativus] >KGN66031.1 hypothetical protein ...	[more]
XP_008450587.1	6.8e-49	71.86	PREDICTED: GATA transcription factor 16-like [Cucumis melo]	[more]
TYK10277.1	2.0e-45	64.52	GATA transcription factor 16-like [Cucumis melo var. makuwa]	[more]
XP_022135615.1	7.8e-45	66.47	GATA transcription factor 16-like isoform X4 [Momordica charantia]	[more]

BLAST of HG10007039 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ10	1.5e-14	43.84	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q8LG10	3.7e-13	42.76	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9LIB5	6.2e-13	38.89	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	1.1e-12	82.86	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q6YW48	6.5e-10	79.41	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]

BLAST of HG10007039 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1G9	8.7e-50	71.86	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569090 P...	[more]
A0A1S3BQ71	3.3e-49	71.86	GATA transcription factor 16-like OS=Cucumis melo OX=3656 GN=LOC103492133 PE=4 S...	[more]
A0A6J1C1I3	3.8e-45	66.47	GATA transcription factor 16-like isoform X4 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1C5A4	3.8e-45	66.47	GATA transcription factor 17-like isoform X2 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1C373	8.4e-45	67.24	GATA transcription factor 17-like isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of HG10007039 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49300.1	1.1e-15	43.84	GATA transcription factor 16	[more]
AT3G06740.1	2.6e-14	42.76	GATA transcription factor 15	[more]
AT3G16870.1	4.4e-14	38.89	GATA transcription factor 17	[more]
AT5G26930.1	7.6e-14	82.86	GATA transcription factor 23	[more]
AT4G16141.1	1.1e-12	34.97	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 13..69 e-value: 2.6E-13 score: 60.2
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 19..52 e-value: 8.0E-18 score: 63.8
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 19..44
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 19..54 score: 12.980124
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 19..53 e-value: 1.34027E-12 score: 57.3826
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 15..61 e-value: 7.0E-15 score: 56.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..102
None	No IPR available	PANTHER	PTHR47172:SF9	GATA TRANSCRIPTION FACTOR 16	coord: 16..162
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 16..162
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 16..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007039.1	HG10007039.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding