HG10006902 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006902
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cytochrome c
Location	Chr07: 23155336 .. 23157318 (+)
RNA-Seq Expression	HG10006902
Synteny	HG10006902

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGATATGGGAAGAAAAGACGTTGTATGATTACTTGCTTAACCCCAAGAAGGTAAATACTCTTTATTTCTTAACACGTGTGAACTTATGGTATTTGATCTGCAGTTAATTTATTCCCCTGAGTTGTTCTCCAGTTGTTCTAATTGTGAATTAAGTGATATTAATAGTAAACACACACCTAGTAGGCATTGTCCTGTTCTATAATTTTAATCAGTAGCCTTGTTCTTCATAATACATCTCCAACTGAGCGACAACTAATGAAATATTTTGGGCACTTTGACCGACACGTTCATCTTTTACACCATCTTCCCCACTAGATCCACTTATCTATTCTCTATTCTTTCTTTCTTCTTCTTTTTTTTTTTTTGAACATTTCAAGTAGTCTTGCTTTAACAAAAAGTCTGTGGAGTCGTGCACCTTTTTCTACTTTGATAATATAAAAGCCAAAAGTTTGGAAGAATAGGCAACCACTTCTTGTATCACAATCCTCCATTCACTTGGAGTTTCAATCTGGATTTAAGATAGAATAGAACCCACAAAAATTGCCTCTTATATATGAATATACTTCAGCAGTCTAGCTGTTAGACTAGTAGTTGGGAAAATATTAGGATTATTAAAATTATTATTATATTAGTACATAGCTGGTAAGATTGTTAGGGCTTTTAGTTACAAAAAGAGGGAGTGGGGTTGGGAGAAAGGTTTGAAGAATTTTTTGGGATTTCGTTTGAGAAATTTGGGAGAGACTGAAGAGTAGCCTTCTCGAAAGGCTATGGCACATTGTAGTTTCTTCATTGATATTGCAATATATATTTCTATCTCTTAGTGTTTTCTTTATTCTTTGTTGTTCTTGAGTGTTCTTGTTAGGAGGTATCCTAATACTGTTATGTCAATAGTTTATTTATTTGGCACATTGAGTTCCCTCCTCAATTTCTTCCCAAGTCTCCTTTTGTGTTCTTGTTAGGAGGTATCCTAACACTATTATGTCAATGCTTTTTAAGTCTTCTGCCACTCCTTTCATGGACATAACTACAAAGGAAGTTTGGAAAATTCCTCTGTTCTCAGTTTGGCATTAAAGACATTCAAAGTTTTCGAAGTGAAACTCTCTCAGTGGAACTTCTGAGCGAAAGTATGTAACACTCACAGTATCATTAGAAAAGGTGTCATTAGAGCTGTATTTCACTGTGTTGGTGTTCTGTGTGTATAAAAGCTCAGAATCCCTAGATAATCTCCTGTTGTTGGTATTTGTGACCCCACTACTGCTCAGATGTGGATTGTTCTTGACCACCCTCAGCACTACAACCCCTTTTTCTTTATGTCTTAGAAGGTCGTGCTTTTAAAAGTGTGAAGGTTTCTTGTTTTCAATGTGACGGTTTCTTTCTGGCTTTTATGGCGGCTCAAAAGGAAAGGAACAAAGTGTTGTTTATAACCACATTGTTTGTAGTGCCCATAAGAAATCGCGAAGCCACCCATTAATAGTAATAGAACTCTGCGCAAAGTTTCCTCCCTATAGTCCTACCGTTATTCCTTTTTCTTCTTCATTTGTCTGCGGAAACTTCGCAAACTAACGTTGTGGCATTCTTTAAAGTTCTAATTCTTTAGAGGACCGTGGTTTGAATCCTTCCATCTCTATTGTGCTAATTTTTTTTTACTGACACATCTCATGTTACAGATCTTTACTAGCTCCGCAACTCTTATGATTACTATGGTTTTGATGAATACAAAGTTATTTGTCAATTTTGAGGAGCATGATATGAAAAATGTTCTCGAACTGGACATATGAATTTTGTTGGATATGTTTTACGAATGATCAGTTGTTTTTCTTCTGAACTCTACCTTTTAGTTGCATAATAAAATATTGACAAATTTTTTGTCTATCATGATACAGTATATTCCCGGAACAAAGATGGTTTTCCCTGGGCTGAAGAAACCGCAGGAACGTGCCGACCTTATTGCTTATCTGAAGGAATCAACTGCTTAA

mRNA sequence

ATGGCTGTGATATGGGAAGAAAAGACGTTGTATGATTACTTGCTTAACCCCAAGAAGTATATTCCCGGAACAAAGATGGTTTTCCCTGGGCTGAAGAAACCGCAGGAACGTGCCGACCTTATTGCTTATCTGAAGGAATCAACTGCTTAA

Coding sequence (CDS)

ATGGCTGTGATATGGGAAGAAAAGACGTTGTATGATTACTTGCTTAACCCCAAGAAGTATATTCCCGGAACAAAGATGGTTTTCCCTGGGCTGAAGAAACCGCAGGAACGTGCCGACCTTATTGCTTATCTGAAGGAATCAACTGCTTAA

Protein sequence

MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA

Homology

[Close]

BLAST of HG10006902 vs. NCBI nr
Match: XP_008452381.1 (PREDICTED: cytochrome c [Cucumis melo] >KAA0058379.1 cytochrome c [Cucumis melo var. makuwa] >TYK26882.1 cytochrome c [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. NCBI nr
Match: XP_011095631.1 (cytochrome c [Sesamum indicum])

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. NCBI nr
Match: XP_039028637.1 (cytochrome c [Hibiscus syriacus] >KAE8679243.1 Cytochrome c [Hibiscus syriacus])

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. NCBI nr
Match: XP_038893188.1 (cytochrome c [Benincasa hispida])

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 89  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 137

[Close]

BLAST of HG10006902 vs. NCBI nr
Match: XP_021288081.1 (cytochrome c [Herrania umbratica])

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. ExPASy Swiss-Prot
Match: P00052 (Cytochrome c OS=Vigna radiata var. radiata OX=3916 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-22
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 63  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111

[Close]

BLAST of HG10006902 vs. ExPASy Swiss-Prot
Match: P00064 (Cytochrome c OS=Allium porrum OX=4681 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.5e-21
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAV+W++ TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 63  MAVVWZZBTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111

[Close]

BLAST of HG10006902 vs. ExPASy Swiss-Prot
Match: P00051 (Cytochrome c OS=Cucurbita maxima OX=3661 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.5e-21
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 2   AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE+TA
Sbjct: 64  AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of HG10006902 vs. ExPASy Swiss-Prot
Match: P00053 (Cytochrome c OS=Cannabis sativa OX=3483 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.2e-21
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAV W++KTLYDYLLNPKKYIPGTKMVFPGLKKP++RADLIAYLKESTA
Sbjct: 63  MAVTWZZKTLYDYLLNPKKYIPGTKMVFPGLKKPZBRADLIAYLKESTA 111

[Close]

BLAST of HG10006902 vs. ExPASy Swiss-Prot
Match: P00062 (Cytochrome c OS=Sambucus nigra OX=4202 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.4e-21
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK+STA
Sbjct: 63  MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111

[Close]

BLAST of HG10006902 vs. ExPASy TrEMBL
Match: A0A0B2QL57 (Cytochrome c OS=Glycine soja OX=3848 GN=D0Y65_025178 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. ExPASy TrEMBL
Match: A0A6P5WWC6 (cytochrome c-like OS=Durio zibethinus OX=66656 GN=LOC111277667 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. ExPASy TrEMBL
Match: C6TJ91 (Cytochrome c domain-containing protein OS=Glycine max OX=3847 GN=100817799 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. ExPASy TrEMBL
Match: C6SZC5 (Cytochrome c domain-containing protein OS=Glycine max OX=3847 GN=100500015 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. ExPASy TrEMBL
Match: A0A5D3DTP9 (Cytochrome c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133G00240 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 64  MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]

BLAST of HG10006902 vs. TAIR 10
Match: AT4G10040.1 (cytochrome c-2 )

HSP 1 Score: 99.4 bits (246), Expect = 8.7e-22
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1   MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE TA
Sbjct: 64  MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

[Close]

BLAST of HG10006902 vs. TAIR 10
Match: AT1G22840.1 (CYTOCHROME C-1 )

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-21
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2   AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 50
           AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 65  AVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

The following BLAST results are available for this feature:

BLAST of HG10006902 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452381.1	2.2e-19	100.00	PREDICTED: cytochrome c [Cucumis melo] >KAA0058379.1 cytochrome c [Cucumis melo ...	[more]
XP_011095631.1	2.2e-19	100.00	cytochrome c [Sesamum indicum]	[more]
XP_039028637.1	2.2e-19	100.00	cytochrome c [Hibiscus syriacus] >KAE8679243.1 Cytochrome c [Hibiscus syriacus]	[more]
XP_038893188.1	2.2e-19	100.00	cytochrome c [Benincasa hispida]	[more]
XP_021288081.1	2.2e-19	100.00	cytochrome c [Herrania umbratica]	[more]

BLAST of HG10006902 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P00052	6.5e-22	97.96	Cytochrome c OS=Vigna radiata var. radiata OX=3916 PE=1 SV=1	[more]
P00064	5.5e-21	89.80	Cytochrome c OS=Allium porrum OX=4681 PE=1 SV=1	[more]
P00051	5.5e-21	95.83	Cytochrome c OS=Cucurbita maxima OX=3661 PE=1 SV=1	[more]
P00053	7.2e-21	89.80	Cytochrome c OS=Cannabis sativa OX=3483 PE=1 SV=1	[more]
P00062	9.4e-21	93.88	Cytochrome c OS=Sambucus nigra OX=4202 PE=1 SV=1	[more]

BLAST of HG10006902 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0B2QL57	1.1e-19	100.00	Cytochrome c OS=Glycine soja OX=3848 GN=D0Y65_025178 PE=3 SV=1	[more]
A0A6P5WWC6	1.1e-19	100.00	cytochrome c-like OS=Durio zibethinus OX=66656 GN=LOC111277667 PE=3 SV=1	[more]
C6TJ91	1.1e-19	100.00	Cytochrome c domain-containing protein OS=Glycine max OX=3847 GN=100817799 PE=2 ...	[more]
C6SZC5	1.1e-19	100.00	Cytochrome c domain-containing protein OS=Glycine max OX=3847 GN=100500015 PE=2 ...	[more]
A0A5D3DTP9	1.1e-19	100.00	Cytochrome c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133G00240 ...	[more]

BLAST of HG10006902 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10040.1	8.7e-22	93.88	cytochrome c-2	[more]
AT1G22840.1	4.3e-21	93.75	CYTOCHROME C-1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002327	Cytochrome c, class IA/ IB	PRINTS	PR00604	CYTCHRMECIAB	coord: 21..31 score: 81.56 coord: 38..46 score: 78.4 coord: 2..18 score: 58.88
IPR002327	Cytochrome c, class IA/ IB	PANTHER	PTHR11961	CYTOCHROME C	coord: 1..49
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 1..47 e-value: 8.2E-17 score: 63.5
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 3..46
None	No IPR available	PANTHER	PTHR11961:SF42	CYTOCHROME C-LIKE	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006902.1	HG10006902.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010336	gibberellic acid homeostasis
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component	GO:0005758	mitochondrial intermembrane space
cellular_component	GO:0070469	respirasome
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding