HG10006808 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006808
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Elf4 domain-containing protein
Location	Chr07: 22198774 .. 22199097 (-)
RNA-Seq Expression	HG10006808
Synteny	HG10006808

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGAGACATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAATAATTTTGTTAAAGTTCAGAATATTTTAGACCAAAACAGATTGCTGATAAATGAAATTAACCAAAATCACGAGTCGAAATTGCCGGATAATCTCACAAGAAACGTAGGTTTAATTCGCGAGCTTAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGATCTCTCCACTTCCTTCACCAAATCCGTCGACCCTTCCGCTTCCGATGGAGACTCCGCCGCCAAGCCCGGCCACAAGCGCAACCGTCCTCCGCCGTAG

mRNA sequence

ATGGAGGAGGAGACATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAATAATTTTGTTAAAGTTCAGAATATTTTAGACCAAAACAGATTGCTGATAAATGAAATTAACCAAAATCACGAGTCGAAATTGCCGGATAATCTCACAAGAAACGTAGGTTTAATTCGCGAGCTTAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGATCTCTCCACTTCCTTCACCAAATCCGTCGACCCTTCCGCTTCCGATGGAGACTCCGCCGCCAAGCCCGGCCACAAGCGCAACCGTCCTCCGCCGTAG

Coding sequence (CDS)

ATGGAGGAGGAGACATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAATAATTTTGTTAAAGTTCAGAATATTTTAGACCAAAACAGATTGCTGATAAATGAAATTAACCAAAATCACGAGTCGAAATTGCCGGATAATCTCACAAGAAACGTAGGTTTAATTCGCGAGCTTAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGATCTCTCCACTTCCTTCACCAAATCCGTCGACCCTTCCGCTTCCGATGGAGACTCCGCCGCCAAGCCCGGCCACAAGCGCAACCGTCCTCCGCCGTAG

Protein sequence

MEEETLWKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRPPP

Homology

[Close]

BLAST of HG10006808 vs. NCBI nr
Match: XP_038890489.1 (protein ELF4-LIKE 3-like [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 92/113 (81.42%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MEEETLWKG------REMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLT 60
           ME ETL  G      REMDGKMV+TFQ NFV+V+NILDQNRLLINEINQNHESK+P NLT
Sbjct: 1   MEGETLSSGGIGKGIREMDGKMVQTFQKNFVQVENILDQNRLLINEINQNHESKMPHNLT 60

Query: 61  RNVGLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRPPP 108
           RNVGLIRELNNNIRRVVDLYADLSTSFTKS+D    DGDSA KPGHKRNRPPP
Sbjct: 61  RNVGLIRELNNNIRRVVDLYADLSTSFTKSID----DGDSAVKPGHKRNRPPP 109

[Close]

BLAST of HG10006808 vs. NCBI nr
Match: XP_022946747.1 (protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022946748.1 protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022999232.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999233.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999234.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999235.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >KAG7030507.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.1 bits (414), Expect = 6.7e-37
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEEETL-----WKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTR 60
           ME ETL       GR+MDGKM +TFQ NFV+VQNILDQNRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRPPP 108
           NVGLIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SAAKPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEAS-SEGNSAAKPGHKRNRPPP 111

[Close]

BLAST of HG10006808 vs. NCBI nr
Match: XP_023521403.1 (protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023521404.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023546933.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023546934.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 89/112 (79.46%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MEEETL-----WKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTR 60
           ME ETL       GR+MDGKM  TFQ NFV+VQNILDQNRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAHTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRPPP 108
           NVGLIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SAAKPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEAS-SEGNSAAKPGHKRNRPPP 111

[Close]

BLAST of HG10006808 vs. NCBI nr
Match: KAG6599530.1 (Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 9   GREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIR 68
           GR+MDGKM +TFQ NFV+VQNILDQNRLLINEINQNHESK+PDNL RNVGLIRELNNNIR
Sbjct: 4   GRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIR 63

Query: 69  RVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRPPP 108
           RVVDLYA LS SFTKS++ S S+G+SAAKPGHKRNRPPP
Sbjct: 64  RVVDLYAHLSASFTKSMEAS-SEGNSAAKPGHKRNRPPP 101

[Close]

BLAST of HG10006808 vs. NCBI nr
Match: XP_016719642.1 (protein ELF4-LIKE 3-like [Gossypium hirsutum] >KAA3457890.1 protein ELF4-LIKE 3-like [Gossypium australe] >MBA0703389.1 hypothetical protein [Gossypium laxum] >MBA0820926.1 hypothetical protein [Gossypium armourianum] >MBA0846902.1 hypothetical protein [Gossypium schwendimanii] >KAG4136567.1 hypothetical protein ERO13_D07G014000v2 [Gossypium hirsutum])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 84/111 (75.68%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MEEET---LWKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNV 60
           ME+ET   L  G E+D K+V+TFQ NFV+VQNILDQNRLLINEINQNHE+K+PDNLTRNV
Sbjct: 1   MEDETYSGLGNGGEIDTKVVQTFQKNFVQVQNILDQNRLLINEINQNHETKIPDNLTRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS---AAKPGHKRNRP 106
           GLIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS       G+KRNRP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSYTKSMDASSSDGDSNGAMKSGGNKRNRP 111

[Close]

BLAST of HG10006808 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-29
Identity = 69/109 (63.30%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MEEETLWK----GREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRN 60
           ME +T+ +    G +MDGK+++TF+ +FV+VQNILD NRLLINEINQNHESK+PDNL RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61  VGLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRP 106
           VGLIRELNNN+RRV  LY DLS +F+KS++ S S+GDS+   G++R RP
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEAS-SEGDSSEGRGNRRIRP 108

[Close]

BLAST of HG10006808 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-26
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 12 MDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRVV 71
          MDGK++++FQ +FV VQ+ILDQNRLLINEINQNHESK PDNL RNVGLI+ELNNNIRRV 
Sbjct: 15 MDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVA 74

Query: 72 DLYADLSTSFTKSVDPSASDGDSA 96
           LY DLS SF +SVD S S+G+S+
Sbjct: 75 SLYGDLSHSFARSVDAS-SEGESS 97

[Close]

BLAST of HG10006808 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-24
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 11  EMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRV 70
           +MDGK+++ FQ +FV+VQ+ILDQNRLLINEINQNHESK  D+L RNVGLIRELNNNIR V
Sbjct: 18  QMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTV 77

Query: 71  VDLYADLSTSFTKSVDPSASDGDS 95
             LY DLS SF +SVD S S+G+S
Sbjct: 78  ASLYGDLSHSFARSVDAS-SEGES 100

[Close]

BLAST of HG10006808 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 13  DGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRVVD 72
           D ++ +T  N F + Q  LDQNR LI  +N+NH S++PDN++RNVGLI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 73  LYADLSTSFTKSVDP---SASDGDS 95
           +Y+DLS +F K  D    +  DGD+
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDGDT 118

[Close]

BLAST of HG10006808 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-14
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 13  DGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRVVD 72
           D  M E    NF +VQ++LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 73  LYADLSTSFTKSVDPSASDGDSAAKPGH 101
           +Y+DL+TSF        S G    K GH
Sbjct: 82  MYSDLNTSF--------SSGFHGGKNGH 101

[Close]

BLAST of HG10006808 vs. ExPASy TrEMBL
Match: A0A6J1KJ14 (protein ELF4-LIKE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111493668 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.3e-37
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEEETL-----WKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTR 60
           ME ETL       GR+MDGKM +TFQ NFV+VQNILDQNRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRPPP 108
           NVGLIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SAAKPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEAS-SEGNSAAKPGHKRNRPPP 111

[Close]

BLAST of HG10006808 vs. ExPASy TrEMBL
Match: A0A6J1G4K6 (protein ELF4-LIKE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450723 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.3e-37
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEEETL-----WKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTR 60
           ME ETL       GR+MDGKM +TFQ NFV+VQNILDQNRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRPPP 108
           NVGLIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SAAKPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEAS-SEGNSAAKPGHKRNRPPP 111

[Close]

BLAST of HG10006808 vs. ExPASy TrEMBL
Match: A0A1U8LYM5 (protein ELF4-LIKE 3-like OS=Gossypium hirsutum OX=3635 GN=LOC107932202 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.7e-34
Identity = 84/111 (75.68%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MEEET---LWKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNV 60
           ME+ET   L  G E+D K+V+TFQ NFV+VQNILDQNRLLINEINQNHE+K+PDNLTRNV
Sbjct: 1   MEDETYSGLGNGGEIDTKVVQTFQKNFVQVQNILDQNRLLINEINQNHETKIPDNLTRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS---AAKPGHKRNRP 106
           GLIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS       G+KRNRP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSYTKSMDASSSDGDSNGAMKSGGNKRNRP 111

[Close]

BLAST of HG10006808 vs. ExPASy TrEMBL
Match: A0A7J9IFS5 (Elf4 domain-containing protein OS=Gossypium armourianum OX=34283 GN=Goarm_017815 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.7e-34
Identity = 84/111 (75.68%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MEEET---LWKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNV 60
           ME+ET   L  G E+D K+V+TFQ NFV+VQNILDQNRLLINEINQNHE+K+PDNLTRNV
Sbjct: 1   MEDETYSGLGNGGEIDTKVVQTFQKNFVQVQNILDQNRLLINEINQNHETKIPDNLTRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS---AAKPGHKRNRP 106
           GLIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS       G+KRNRP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSYTKSMDASSSDGDSNGAMKSGGNKRNRP 111

[Close]

BLAST of HG10006808 vs. ExPASy TrEMBL
Match: A0A7J9KKD2 (Elf4 domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_009168 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.7e-34
Identity = 84/111 (75.68%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MEEET---LWKGREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNV 60
           ME+ET   L  G E+D K+V+TFQ NFV+VQNILDQNRLLINEINQNHE+K+PDNLTRNV
Sbjct: 1   MEDETYSGLGNGGEIDTKVVQTFQKNFVQVQNILDQNRLLINEINQNHETKIPDNLTRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS---AAKPGHKRNRP 106
           GLIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS       G+KRNRP
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSYTKSMDASSSDGDSNGAMKSGGNKRNRP 111

[Close]

BLAST of HG10006808 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 128.3 bits (321), Expect = 3.8e-30
Identity = 69/109 (63.30%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MEEETLWK----GREMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRN 60
           ME +T+ +    G +MDGK+++TF+ +FV+VQNILD NRLLINEINQNHESK+PDNL RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61  VGLIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAKPGHKRNRP 106
           VGLIRELNNN+RRV  LY DLS +F+KS++ S S+GDS+   G++R RP
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEAS-SEGDSSEGRGNRRIRP 108

[Close]

BLAST of HG10006808 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-27
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 12 MDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRVV 71
          MDGK++++FQ +FV VQ+ILDQNRLLINEINQNHESK PDNL RNVGLI+ELNNNIRRV 
Sbjct: 15 MDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVA 74

Query: 72 DLYADLSTSFTKSVDPSASDGDSA 96
           LY DLS SF +SVD S S+G+S+
Sbjct: 75 SLYGDLSHSFARSVDAS-SEGESS 97

[Close]

BLAST of HG10006808 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-27
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 12 MDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRVV 71
          MDGK++++FQ +FV VQ+ILDQNRLLINEINQNHESK PDNL RNVGLI+ELNNNIRRV 
Sbjct: 15 MDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVA 74

Query: 72 DLYADLSTSFTKSVDPSASDGDSA 96
           LY DLS SF +SVD S S+G+S+
Sbjct: 75 SLYGDLSHSFARSVDAS-SEGESS 97

[Close]

BLAST of HG10006808 vs. TAIR 10
Match: AT1G72630.1 (ELF4-like 2 )

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 11  EMDGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRV 70
           +MDGK+++ FQ +FV+VQ+ILDQNRLLINEINQNHESK  D+L RNVGLIRELNNNIR V
Sbjct: 18  QMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTV 77

Query: 71  VDLYADLSTSFTKSVDPSASDGDS 95
             LY DLS SF +SVD S S+G+S
Sbjct: 78  ASLYGDLSHSFARSVDAS-SEGES 100

[Close]

BLAST of HG10006808 vs. TAIR 10
Match: AT2G29950.1 (ELF4-like 1 )

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 13  DGKMVETFQNNFVKVQNILDQNRLLINEINQNHESKLPDNLTRNVGLIRELNNNIRRVVD 72
           D ++ +T  N F + Q  LDQNR LI  +N+NH S++PDN++RNVGLI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 73  LYADLSTSFTKSVDP---SASDGDS 95
           +Y+DLS +F K  D    +  DGD+
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDGDT 118

The following BLAST results are available for this feature:

BLAST of HG10006808 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890489.1	1.2e-38	81.42	protein ELF4-LIKE 3-like [Benincasa hispida]	[more]
XP_022946747.1	6.7e-37	79.46	protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022946748.1 protein ELF4-LIKE ...	[more]
XP_023521403.1	1.1e-36	79.46	protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023521404.1...	[more]
KAG6599530.1	1.1e-36	84.85	Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_016719642.1	1.2e-33	75.68	protein ELF4-LIKE 3-like [Gossypium hirsutum] >KAA3457890.1 protein ELF4-LIKE 3-...	[more]

BLAST of HG10006808 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8F5	5.4e-29	63.30	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	4.2e-26	73.81	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	1.8e-24	71.43	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]
O80877	2.2e-14	47.06	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]
O04211	3.7e-14	46.59	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]

BLAST of HG10006808 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJ14	3.3e-37	79.46	protein ELF4-LIKE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111493668 PE=3 SV=1	[more]
A0A6J1G4K6	3.3e-37	79.46	protein ELF4-LIKE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450723 PE=3 SV=1	[more]
A0A1U8LYM5	5.7e-34	75.68	protein ELF4-LIKE 3-like OS=Gossypium hirsutum OX=3635 GN=LOC107932202 PE=3 SV=1	[more]
A0A7J9IFS5	5.7e-34	75.68	Elf4 domain-containing protein OS=Gossypium armourianum OX=34283 GN=Goarm_017815...	[more]
A0A7J9KKD2	5.7e-34	75.68	Elf4 domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_0091...	[more]

BLAST of HG10006808 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06255.1	3.8e-30	63.30	ELF4-like 3	[more]
AT1G17455.1	3.0e-27	73.81	ELF4-like 4	[more]
AT1G17455.2	3.0e-27	73.81	ELF4-like 4	[more]
AT1G72630.1	1.3e-25	71.43	ELF4-like 2	[more]
AT2G29950.1	1.6e-15	47.06	ELF4-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 12..90 e-value: 2.1E-39 score: 133.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..107
None	No IPR available	PANTHER	PTHR33469:SF17	PROTEIN ELF4-LIKE 3-LIKE	coord: 1..105
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006808.1	HG10006808.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0042753	positive regulation of circadian rhythm
cellular_component	GO:0005634	nucleus