HG10006775 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006775
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L28-1-like
Location	Chr07: 21922926 .. 21925167 (-)
RNA-Seq Expression	HG10006775
Synteny	HG10006775

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACGTTCCGGGGCAGTTGGTTTGGGAAATCGTTAAGAAGAACAGCTCTTTCCTCGTTAAAGAGTTCGGCAGAGGCAATGCTAGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAACCTCAACTCCTATAAGCATTCCGGTAAGTTTCCAATAAGTTATATTTTTCCATCTTATACAATCGTTTAAATTTGAGGAAAATATCAGGAGGATATTTTCTCCGGTACCGTCATGATCTTTGTCGAGCTAGTTTATCACTTTAAGCAATTTTACGTGCGAGATGATTGCCATTTTTGTGTTTTGTACATTTTCTTAAGGAGTATCTACGAAATCCTGCTTTGTTTTAATGTGTTGGGTTTATTACTTGTTTTTATTGAACGTTCTTTGGGTGCTCTGTCAGGGTTGGCAAATCGTAAGACAGTGACCATTCAGCCAGGAGGCAAGGATTTTTCAGTATTGCTCGCGACAACAAAGACGAAAAAGCAGAACAAACCCGCAAGTTTGCTCCACAAATCCGTCATGAGGAAGGAATTTCCTCGTATGGCCAAGGCTGTGACTAATCAGGTAACCAGCCTCTCCAGATCTTCTCATTGATGCCCATTGAGATGAAATTTGTGTTTCCCAAGTCCGATCGTATCTGACCTATTTATACTGCCTGTAGTTGTCATTGGTCGTTTATAGTTTGAGTTATCAGGGAATTATTCTGTTAAATATTCTGCATTGTTTTCCTGTTCAATCTTTTGGTACAAGATATTATCTTCTATTCTCATCAACATGATCATGTGCTATGTCATGTTTTTCTGTCTTCTTCTTTAAGAAGTAGCCAATAATGTTTTTATAGTTTTCCTATTGTGGTTGATCCGAATATGCTACTGAATGTGCATTGTTTTGCGGTGATGAGAAAGCTAACATGTAAGAAGGGCTGCTTTTGTAGCGGCATCTTCAATGAAATCTATTTGTTACGCTTGGCTTCTGAGCACAATTTTCCATTTTCTACCATGTTAGACTGTTGAAAACAATGTTGCTTGAGATCCTATGTATATTAGGTTGATTGCTGTCTTACCCTGACTTTGCTGTCTTTTCATAATTTTTATAGAAAAACTAGACGATCCAAAGTACAATGGGGTAGTAATTGTGGGCAAGCTTAAGGTTGTTAATGTGATGTTGACCTCTTATCATGTATGGAGGTCACTTTTACATTACAGTGGGTCTCTGATGAAATCTTTTTGTTATGGTTGGCTTCATGTAATTTCCCAGAATTTGTGTAGCATAATATGAAACGTCTGTGAATATAATATGACTGCAGAAATTTAATTGAACAACTTGGGGTGAGCAAACTTTTTAACTGAACCTATTGTTGCGATGATGAGCTGCTAACATGTAAGAAGGGCTGCTTTTGTAGCGGCATCTTCAATGAAATCTTTTTGTTACGCTTGGCTTCTGAGCATTAATTCTCCTCTTGTCTACAGACTACTTTGAATCTTTGAATTGCTTGTCTTGATCGATCTTTGATTATATTCCTTAGTGCTTCATGTAATTTCCCTCAACTTCCGTTTGTATCTTATTATTGAACTTCTTTTTATAGTATACTACACTAGAAAGTCAATGGAACAACTAGGCGAGGCCCAACTTTAACTCATACTCTTAAAGTTACTGTGATGATGAGCTGCTAACATGTAAGAAGAAGTCACTTTCGTAGTGGCATCTTCAATGAAATCCTTTTGTTACGCTTGGCTTCTGAGCATTAATTCTCCTCTTGGGTGAAAACAACTTCGATCTATAATTTGCTTTGCTTGATTGGATCCCTGATTGTATTCCTTAACACTTTTCTTCATGTAATTTATGATTACTTATTCATGTAGCATAATATCAAAACTTAAAAACTGTTACGGCCATGATGAGCTGCTAACATGTAAGAAGACGTCGCTTACGTAGTGGCATCTTCAGTGAAATCTTTTTGTTACGCTTGGCTTCTGAGCATGAATTTATTAAATGATGTGTATTATATGGTTGGGGAGAGTCTGTATATTGTTTCCTTCTGATTGTAACTAATTAGATTGCAGCTAAATTTGGGGTGTACTTGTTGCTTTTGCAGGTGGTCGACAATTATTACCGCCCGGACTTGAAGAAGGCTGCCCTTGCCAAGCTAAGTGCCGTTCACAGGAGCCTCAAGGTTGCCAAGTCCGGTGTCAAAAAGAGGAACAGGCAGGCTGTTAGGACATGCGGTAGGAAGTGA

mRNA sequence

ATGGCGAACGTTCCGGGGCAGTTGGTTTGGGAAATCGTTAAGAAGAACAGCTCTTTCCTCGTTAAAGAGTTCGGCAGAGGCAATGCTAGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAACCTCAACTCCTATAAGCATTCCGGGTTGGCAAATCGTAAGACAGTGACCATTCAGCCAGGAGGCAAGGATTTTTCAGTATTGCTCGCGACAACAAAGACGAAAAAGCAGAACAAACCCGCAAGTTTGCTCCACAAATCCGTCATGAGGAAGGAATTTCCTCGTATGGCCAAGGCTGTGACTAATCAGGTGGTCGACAATTATTACCGCCCGGACTTGAAGAAGGCTGCCCTTGCCAAGCTAAGTGCCGTTCACAGGAGCCTCAAGGTTGCCAAGTCCGGTGTCAAAAAGAGGAACAGGCAGGCTGTTAGGACATGCGGTAGGAAGTGA

Coding sequence (CDS)

ATGGCGAACGTTCCGGGGCAGTTGGTTTGGGAAATCGTTAAGAAGAACAGCTCTTTCCTCGTTAAAGAGTTCGGCAGAGGCAATGCTAGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAACCTCAACTCCTATAAGCATTCCGGGTTGGCAAATCGTAAGACAGTGACCATTCAGCCAGGAGGCAAGGATTTTTCAGTATTGCTCGCGACAACAAAGACGAAAAAGCAGAACAAACCCGCAAGTTTGCTCCACAAATCCGTCATGAGGAAGGAATTTCCTCGTATGGCCAAGGCTGTGACTAATCAGGTGGTCGACAATTATTACCGCCCGGACTTGAAGAAGGCTGCCCTTGCCAAGCTAAGTGCCGTTCACAGGAGCCTCAAGGTTGCCAAGTCCGGTGTCAAAAAGAGGAACAGGCAGGCTGTTAGGACATGCGGTAGGAAGTGA

Protein sequence

MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQPGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALAKLSAVHRSLKVAKSGVKKRNRQAVRTCGRK

Homology

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BLAST of HG10006775 vs. NCBI nr
Match: XP_038889445.1 (60S ribosomal protein L28-1-like [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFL KEFGRGNAS+QFSKEPNNLYNLNSYKHSGLAN+KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLFKEFGRGNASIQFSKEPNNLYNLNSYKHSGLANQKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
           PGGKD SVLLATTKTKKQNKPASLLHKS+MRKEFPRMAKAVTNQV DNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATTKTKKQNKPASLLHKSIMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKKRNRQAVRT GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTRGRK 150

[Close]

BLAST of HG10006775 vs. NCBI nr
Match: XP_022154747.1 (60S ribosomal protein L28-1-like [Momordica charantia])

HSP 1 Score: 270.8 bits (691), Expect = 7.2e-69
Identity = 139/150 (92.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+SFLVKEFGRGNA VQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
           PGGKD SVLLATTK KKQNKPASLLH+SVMRKEFPRMAKAV NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLS VHRSLKVAKSGVKKRNRQA++T GRK
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150

[Close]

BLAST of HG10006775 vs. NCBI nr
Match: XP_008459233.1 (PREDICTED: 60S ribosomal protein L28-1-like [Cucumis melo])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
           PGGKD SVLLAT+KTKKQNKPA+ LHKSVMRKEFPRMAKAVTNQV DNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAVRT GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of HG10006775 vs. NCBI nr
Match: XP_022999539.1 (60S ribosomal protein L28-1-like [Cucurbita maxima] >XP_022999540.1 60S ribosomal protein L28-1-like [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 139/150 (92.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNS FLVKEFGRG+A VQFSKEPNNLYNLNSYKHSGLAN+KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSCFLVKEFGRGSAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
           PGGKD SVLLATTK KKQNKPASLL+KSVMRKEFP MAKAVTNQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVLLATTKRKKQNKPASLLNKSVMRKEFPSMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLK+AKSGVKKRNRQAVRT GRK
Sbjct: 121 KLSAVHRSLKIAKSGVKKRNRQAVRTRGRK 150

[Close]

BLAST of HG10006775 vs. NCBI nr
Match: XP_022938097.1 (60S ribosomal protein L28-2-like [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 135/150 (90.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNA VQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
            GGKD S+L+ATTKTKKQNKPASLLHKS+ RKEFPRM K VTNQV DNYYRPDLK AALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVA+SGVKKRNRQA++T GRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of HG10006775 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.3e-54
Identity = 106/143 (74.13%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
              KD +V+LATTKTKKQNKP   ++KS+++KEFPRM+KAV NQVVDNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of HG10006775 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.0e-54
Identity = 105/143 (73.43%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
             GKD  V+L TTKTK+QNKP   ++KS+++KEF RM+K V NQVVDNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of HG10006775 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTI--QPGGKD 67
           L W I++ N++FLVK   + N    FSKEPNN+ NLNSY+++GL  +K V +   P  K 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  FSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAK----AVTNQVVDNYYRPDLKKAALAK 127
           F+V+    K K  NKPA    K+ +R++F   A+     V   +  N+YR DL KA L +
Sbjct: 65  FTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRR 124

Query: 128 LSAVHRSLKVAKS 135
            SA+ RS +  K+
Sbjct: 125 ASAILRSQRPIKA 128

[Close]

BLAST of HG10006775 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQPGGKDFS 67
           L W +V+  SSFL+K          +S EPNNL   NS++++GL +RKTV ++P      
Sbjct: 5   LQWMVVRNCSSFLIK-----RNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  VLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALAKLSAVHR 127
           V++   +   Q KPA+   ++ + K       ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of HG10006775 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQPGGKDFS 67
           L W +V+  SSFL+K          +S EPNNL   NS++++GL +RKTV ++P      
Sbjct: 5   LQWMVVRNCSSFLIK-----RNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  VLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALAKLSAVHR 127
           V++   +   Q KPA+   ++ + K       ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of HG10006775 vs. ExPASy TrEMBL
Match: A0A6J1DMI9 (60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69
Identity = 139/150 (92.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+SFLVKEFGRGNA VQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
           PGGKD SVLLATTK KKQNKPASLLH+SVMRKEFPRMAKAV NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLS VHRSLKVAKSGVKKRNRQA++T GRK
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150

[Close]

BLAST of HG10006775 vs. ExPASy TrEMBL
Match: A0A6J1KHD5 (60S ribosomal protein L28-1-like OS=Cucurbita maxima OX=3661 GN=LOC111493869 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 139/150 (92.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNS FLVKEFGRG+A VQFSKEPNNLYNLNSYKHSGLAN+KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSCFLVKEFGRGSAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
           PGGKD SVLLATTK KKQNKPASLL+KSVMRKEFP MAKAVTNQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVLLATTKRKKQNKPASLLNKSVMRKEFPSMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLK+AKSGVKKRNRQAVRT GRK
Sbjct: 121 KLSAVHRSLKIAKSGVKKRNRQAVRTRGRK 150

[Close]

BLAST of HG10006775 vs. ExPASy TrEMBL
Match: A0A1S3CAX2 (60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
           PGGKD SVLLAT+KTKKQNKPA+ LHKSVMRKEFPRMAKAVTNQV DNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAVRT GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of HG10006775 vs. ExPASy TrEMBL
Match: A0A6J1FD25 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.5e-68
Identity = 135/150 (90.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNA VQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
            GGKD S+L+ATTKTKKQNKPASLLHKS+ RKEFPRM K VTNQV DNYYRPDLK AALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVA+SGVKKRNRQA++T GRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of HG10006775 vs. ExPASy TrEMBL
Match: A0A5D3CHM3 (60S ribosomal protein L28-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00850 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.5e-68
Identity = 139/150 (92.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTIQ
Sbjct: 398 MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 457

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
           PGGKD SVLLAT+KTKKQNKPA+ LHKSVMRKEFPRMAKAVTNQV DNYYRPDLK AALA
Sbjct: 458 PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 517

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAV T GRK
Sbjct: 518 KLSAVHRSLKVAKSGVKKGNRQAVTTRGRK 547

[Close]

BLAST of HG10006775 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-55
Identity = 106/143 (74.13%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
              KD +V+LATTKTKKQNKP   ++KS+++KEFPRM+KAV NQVVDNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of HG10006775 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-55
Identity = 106/143 (74.13%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
              KD +V+LATTKTKKQNKP   ++KS+++KEFPRM+KAV NQVVDNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of HG10006775 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-55
Identity = 106/143 (74.13%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
              KD +V+LATTKTKKQNKP   ++KS+++KEFPRM+KAV NQVVDNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of HG10006775 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 212.2 bits (539), Expect = 2.8e-55
Identity = 105/143 (73.43%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
             GKD  V+L TTKTK+QNKP   ++KS+++KEF RM+K V NQVVDNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of HG10006775 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 212.2 bits (539), Expect = 2.8e-55
Identity = 105/143 (73.43%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDFSVLLATTKTKKQNKPASLLHKSVMRKEFPRMAKAVTNQVVDNYYRPDLKKAALA 120
             GKD  V+L TTKTK+QNKP   ++KS+++KEF RM+K V NQVVDNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

The following BLAST results are available for this feature:

BLAST of HG10006775 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889445.1	1.3e-70	94.67	60S ribosomal protein L28-1-like [Benincasa hispida]	[more]
XP_022154747.1	7.2e-69	92.67	60S ribosomal protein L28-1-like [Momordica charantia]	[more]
XP_008459233.1	3.5e-68	93.33	PREDICTED: 60S ribosomal protein L28-1-like [Cucumis melo]	[more]
XP_022999539.1	3.5e-68	92.67	60S ribosomal protein L28-1-like [Cucurbita maxima] >XP_022999540.1 60S ribosoma...	[more]
XP_022938097.1	1.3e-67	90.00	60S ribosomal protein L28-2-like [Cucurbita moschata]	[more]

BLAST of HG10006775 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82204	2.3e-54	74.13	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
Q9M0E2	4.0e-54	73.43	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
Q962T2	2.6e-13	39.85	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
Q3T0L7	2.9e-12	34.15	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]
P46779	2.9e-12	34.15	60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3	[more]

BLAST of HG10006775 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMI9	3.5e-69	92.67	60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 ...	[more]
A0A6J1KHD5	1.7e-68	92.67	60S ribosomal protein L28-1-like OS=Cucurbita maxima OX=3661 GN=LOC111493869 PE=...	[more]
A0A1S3CAX2	1.7e-68	93.33	60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV...	[more]
A0A6J1FD25	6.5e-68	90.00	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 P...	[more]
A0A5D3CHM3	8.5e-68	92.67	60S ribosomal protein L28-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of HG10006775 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19730.1	1.6e-55	74.13	Ribosomal L28e protein family	[more]
AT2G19730.2	1.6e-55	74.13	Ribosomal L28e protein family	[more]
AT2G19730.3	1.6e-55	74.13	Ribosomal L28e protein family	[more]
AT4G29410.1	2.8e-55	73.43	Ribosomal L28e protein family	[more]
AT4G29410.2	2.8e-55	73.43	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 6..133 e-value: 4.2E-44 score: 152.0
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 4.1E-34 score: 117.7
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006775.1	HG10006775.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome