HG10006772 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006772
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein S30
Location	Chr07: 21901213 .. 21903455 (-)
RNA-Seq Expression	HG10006772
Synteny	HG10006772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAACTAGACCAATTTTGTATGGAAAGATGTTTGATTTGAAGCTTCATTCATTCATAAAATCTACCTTTGGCTGTTGTATACGAAAAGTTCACTTGCAATGCCAGCGTTCATTCTTTCTTAATCTGCATGAGAAGATTTGGATGTCCTGTACGAAGATATTTGTTAGGATTCAAGGTATAGTATGCTCTACCTTTGTCTTATAACTGTTAGGATAGGATGGCCGTACTTAAGTGGCTTGGCTCTCTCATCTTAATGGTTAGCTTTTGGGGTGTGATTCATCAAGGTGTTGTACCTAACAATGGTACTAATGTCACTTGTCAGAAGCACAAGTGGAGTGTGTTTTAAGTGGGTGTTTTCTTGATTATCGGCGGTCTAGTCTTTGGAATGTTAGCTTGTGGATGGGGTATTGTTAGGAGCCAAGGTTGTTTGGGTTACCTTTCTCCCTCATCATGTGGTAGTGATTTGGTTCTCTCACTTCAATAGTTGGTTCTCCAAAGTGCTTAAGTAACTAACTATACTCTTTCCCATCCATAATTTACTCTTTCCCATCCATAATTTGTAAATGTTACCTTCCATAGTTGATTTCTGGAAGCCATGGTGAACTTCTCTCTGATTTAACCATGTGCATGTGAACAAATAGTAATAATAAGTGAATACAAGTTTCTTAAATTAATATAAAGAAATAATGAATTTGTCAATTTAAAAAAAAATTATGAGGATTTTATTTAAACTATTGGGATTGAATTTTTATGGGAGTATCTAACTTTCTCTAACCTATAAGGTCCAAATTTGTAATTTCACTTATAAAGAATGAATGAAGTTGTTTCAATAGTTTCTTTTGTTCATAAATTGTCAGTCTTCAAATTTTAATTTGATAATCATTTGGTTTATTTATTTTTAACAATTAAGCTTATAAATACTATGTTTTTATAGTATTAGGGTCCCTTTGGATTTACTTTTTAATTTTTAATAATTAAGCTTATAAATATTATGTTTTTATAGTATTAAGGTCCGTTTAGATTTACTTTTTTTAAGTGTTTGTAAACATTTTAATTGATGTTTTCAAAACTCAAATTAAATTTTGATAACATGTTAATGTTTTTAGAACTTGAATGGAAATTCAGGTGTTTCTTCAAAAAGGTGAAAAATAATAATTGAAAATTTAGAAATAAACAAATATAGATTTGAAAATAGAAAAATGATATTGAAATCTTCATCAAACTACGTCTAATTTTTCATAAAGAAACAATTTTGGTTATTATACCAACTCATTTTTAATATTTACATTCATTGACCTTCATGGGTTAAAAAAAGTTAAAAGATTCGTTTAGAGTTGAAATCTGATCTCAAGTTTTATAAAAAGAAGATTAAAAGTGAATATAATATTTATATAATTAAGCGAAAAAAAAAGAGTCTGTGTAACAGTAAAAAGGTATGTAATACTCAAAAAATTAAAAAAGAATGCAAAAGAAATTTATTTGGATTTAATAAATTGGTTAAATTGCAAATTTAATTTTATTTGGAGTAAGTTAGAATTTAGGTTATAGTTTATAATTAGAATTTAGTTGGATTAATAAAAAAATTTATAAGAATTTTATCAAATCATAGACTCAATTTTAATTTTTAAAACTATAAGATTAAATTTGTAATTTAACCCGATAAATGTGGGCCGACTAGAAGTGAGATTGAAAATGGGCTGGGCCGGCTGGATCAAATTTTCCCGCGTCTAAGCAACCCACTACTATATATTTGTCTGACCAAAACTCCAACCCTAATTTTTGGCCTTTGCGTTTTAGCGGACGAAGCGAAGAAGCCAGTCGCCGAACATCCGGAAGAGGAGAAGTCGCTTACCAGATTCGCCATGGGTGAGACTCAAGCTCCCTATCTTCATTTCAGATTTTATTTTCTTCTGTTTAACGTTACTCAGTAATCTGTTTCTTCATCTGTGTAATCGACATTCAGGTAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGATAAGAAGAAGAAGCCACGAGGACGTGCCCACAAACGGATGCAATACAACCGCAGATTCGTCACTGCCGGTATGTGTTCATTTTCGCTCTCTGATATTGAATGGTGTTCGAACTTCAATCATTTTCTAGATTTTTATGAATGTTAATTTCCTCTTGTAGTTGTTGGCTTCGGAAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAA

mRNA sequence

ATGGCAGAACTAGACCAATTTTCGGACGAAGCGAAGAAGCCAGTCGCCGAACATCCGGAAGAGGAGAAGTCGCTTACCAGATTCGCCATGGGTAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGATAAGAAGAAGAAGCCACGAGGACGTGCCCACAAACGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTCGGAAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAA

Coding sequence (CDS)

ATGGCAGAACTAGACCAATTTTCGGACGAAGCGAAGAAGCCAGTCGCCGAACATCCGGAAGAGGAGAAGTCGCTTACCAGATTCGCCATGGGTAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGATAAGAAGAAGAAGCCACGAGGACGTGCCCACAAACGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTCGGAAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAA

Protein sequence

MAELDQFSDEAKKPVAEHPEEEKSLTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

Homology

[Close]

BLAST of HG10006772 vs. NCBI nr
Match: KAA0061505.1 (Ribosomal protein S30 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.8e-33
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 8  SDEAKKPVAEHPEEEKSLTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRM 67
          +DEA KPV  HPE +KSL RFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRM
Sbjct: 4  ADEANKPVDRHPERKKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRM 63

Query: 68 QYNRRFVTAVVGFGKKRGPNSSEK 92
          QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 64 QYNRRFVTAVVGFGKKRGPNSSEK 87

[Close]

BLAST of HG10006772 vs. NCBI nr
Match: XP_004141043.2 (40S ribosomal protein S30 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 7.0e-27
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 25 LTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 84
          L RFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR
Sbjct: 29 LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 88

Query: 85 GPNSSEK 92
          GPNSSEK
Sbjct: 89 GPNSSEK 95

[Close]

BLAST of HG10006772 vs. NCBI nr
Match: KAF4346455.1 (hypothetical protein G4B88_007409 [Cannabis sativa])

HSP 1 Score: 128.3 bits (321), Expect = 3.5e-26
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 23 KSLTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK 82
          K + +F MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK
Sbjct: 21 KKVKKFTMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK 80

Query: 83 KRGPNSSEK 92
          KRGPNSSEK
Sbjct: 81 KRGPNSSEK 89

[Close]

BLAST of HG10006772 vs. NCBI nr
Match: KAG6599498.1 (40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 27  RFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 86
           R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP
Sbjct: 47  RLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 106

Query: 87  NSSEK 92
           NSSEK
Sbjct: 107 NSSEK 111

[Close]

BLAST of HG10006772 vs. NCBI nr
Match: EXB24685.1 (40S ribosomal protein S30 [Morus notabilis])

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-25
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 10  EAKKPVAEHPEEEKSLTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY 69
           + K   ++   + K+  + AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY
Sbjct: 57  QCKLAASKGDSQPKNARKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY 116

Query: 70  NRRFVTAVVGFGKKRGPNSSEK 92
           NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 117 NRRFVTAVVGFGKKRGPNSSEK 138

[Close]

BLAST of HG10006772 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 30 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 89
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 90 EK 92
          EK
Sbjct: 61 EK 62

[Close]

BLAST of HG10006772 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 32 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 90
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of HG10006772 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 32 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 90
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of HG10006772 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 32 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 90
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of HG10006772 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.2e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 32 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 90
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of HG10006772 vs. ExPASy TrEMBL
Match: A0A5A7V6N6 (40S ribosomal protein S30 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00660 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 8  SDEAKKPVAEHPEEEKSLTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRM 67
          +DEA KPV  HPE +KSL RFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRM
Sbjct: 4  ADEANKPVDRHPERKKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRM 63

Query: 68 QYNRRFVTAVVGFGKKRGPNSSEK 92
          QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 64 QYNRRFVTAVVGFGKKRGPNSSEK 87

[Close]

BLAST of HG10006772 vs. ExPASy TrEMBL
Match: A0A0A0LFS8 (40S ribosomal protein S30 OS=Cucumis sativus OX=3659 GN=Csa_2G000610 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 25 LTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 84
          L RFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR
Sbjct: 29 LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 88

Query: 85 GPNSSEK 92
          GPNSSEK
Sbjct: 89 GPNSSEK 95

[Close]

BLAST of HG10006772 vs. ExPASy TrEMBL
Match: K3YYK8 (40S ribosomal protein S30 OS=Setaria italica OX=4555 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 19 PEEEKSLTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVV 78
          PE   S    AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVV
Sbjct: 21 PEHHSSAAAAAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVV 80

Query: 79 GFGKKRGPNSSEK 92
          GFGKKRGPNSSEK
Sbjct: 81 GFGKKRGPNSSEK 93

[Close]

BLAST of HG10006772 vs. ExPASy TrEMBL
Match: A0A7J6DK29 (40S ribosomal protein S30 OS=Cannabis sativa OX=3483 GN=G4B88_007409 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 23 KSLTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK 82
          K + +F MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK
Sbjct: 21 KKVKKFTMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK 80

Query: 83 KRGPNSSEK 92
          KRGPNSSEK
Sbjct: 81 KRGPNSSEK 89

[Close]

BLAST of HG10006772 vs. ExPASy TrEMBL
Match: W9QWZ6 (40S ribosomal protein S30 OS=Morus notabilis OX=981085 GN=L484_005479 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.4e-26
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 10  EAKKPVAEHPEEEKSLTRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY 69
           + K   ++   + K+  + AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY
Sbjct: 57  QCKLAASKGDSQPKNARKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY 116

Query: 70  NRRFVTAVVGFGKKRGPNSSEK 92
           NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 117 NRRFVTAVVGFGKKRGPNSSEK 138

[Close]

BLAST of HG10006772 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 30 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 89
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 90 EK 92
          EK
Sbjct: 61 EK 62

[Close]

BLAST of HG10006772 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 30 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 89
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 90 EK 92
          EK
Sbjct: 61 EK 62

[Close]

BLAST of HG10006772 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 30 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 89
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 90 EK 92
          EK
Sbjct: 61 EK 62

The following BLAST results are available for this feature:

BLAST of HG10006772 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061505.1	3.8e-33	91.67	Ribosomal protein S30 [Cucumis melo var. makuwa]	[more]
XP_004141043.2	7.0e-27	98.51	40S ribosomal protein S30 [Cucumis sativus]	[more]
KAF4346455.1	3.5e-26	92.75	hypothetical protein G4B88_007409 [Cannabis sativa]	[more]
KAG6599498.1	1.0e-25	98.46	40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia]	[more]
EXB24685.1	1.3e-25	79.27	40S ribosomal protein S30 [Morus notabilis]	[more]

BLAST of HG10006772 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49689	1.2e-26	96.77	40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3	[more]
P62866	6.2e-18	79.31	40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1	[more]
P62860	6.2e-18	79.31	40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1	[more]
P62861	6.2e-18	79.31	40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1	[more]
P62862	6.2e-18	79.31	40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1	[more]

BLAST of HG10006772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6N6	1.9e-33	91.67	40S ribosomal protein S30 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0LFS8	3.4e-27	98.51	40S ribosomal protein S30 OS=Cucumis sativus OX=3659 GN=Csa_2G000610 PE=3 SV=1	[more]
K3YYK8	1.3e-26	90.41	40S ribosomal protein S30 OS=Setaria italica OX=4555 PE=3 SV=1	[more]
A0A7J6DK29	1.7e-26	92.75	40S ribosomal protein S30 OS=Cannabis sativa OX=3483 GN=G4B88_007409 PE=3 SV=1	[more]
W9QWZ6	6.4e-26	79.27	40S ribosomal protein S30 OS=Morus notabilis OX=981085 GN=L484_005479 PE=3 SV=1	[more]

BLAST of HG10006772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19750.1	8.8e-28	96.77	Ribosomal protein S30 family protein	[more]
AT4G29390.1	8.8e-28	96.77	Ribosomal protein S30 family protein	[more]
AT5G56670.1	8.8e-28	96.77	Ribosomal protein S30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 32..88 e-value: 5.2E-30 score: 103.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 30..91
None	No IPR available	PANTHER	PTHR12650:SF28	40S RIBOSOMAL PROTEIN S30	coord: 30..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006772.1	HG10006772.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0002229	defense response to oomycetes
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006412	translation
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004675	transmembrane receptor protein serine/threonine kinase activity