HG10006671 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006671
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	early nodulin-93-like
Location	Chr07: 20898805 .. 20900757 (+)
RNA-Seq Expression	HG10006671
Synteny	HG10006671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAATGTGGCTCAGGCCTTTCTCGAGAGGAAAAATCTGGCCTCTCATGACCCAAAAGTGGCAATGGCAAAGCGCTGTGCTAAAGGTAACGCTTTTGATTTTTTTCTTTTTCTGGGATTTTTTATGAGGAACAAAAAAGTAATGGGTATGTATGATTTTTACTTGCTTTGCTTTCATGATACCACAATGTGATGTATTTGATGAGTTGGGTGGTTGAAAATAATGGCTGATTGATCATAATAATGGGTTTAAGATTTAGTTTTTTGATAAAGCCTTTTAGCTGTTCGACGAAATTCCCCAAAGAGGGTTTTGTTCCTTAAGCTTCAAGAATGGATTGAAAGTAAAAGGGTTCTTCTTTTTTAATATGATTGAGGGAGCATTTCCAACTTCCCCCACCAACTCTTCTTTTTTAGTTAATGATTTAATGTAAAAGCTAAAGAGAGATGGGATTTGATCCATGCGCATGTTGATTGGATATATGCTGCATTTTTTACTGATTTGATTGTTTTGATCGATTGGCTGGTGGACCATGATCCACTTCAGATTTGGTGCCATGAAAATAAGTGAATTCTGAGTTGTTGTGTTTCTAATAATTTCTCCTCACGAATTTAGCTTTTATCATCAGTATCTGAAGCTAATGGGTAAGGATTCTTCTTTTTCTGATGGACAGAGGGTGTGATAGCAGGAGCAAAAGCAGCTGCCATTGCTAGTATTGCCACTGCCATTCCTACTGTAAGTTCCCAACTTCATTATGCACATACAGATGCTTTATCTTCCCTTTCTTTGGGGAATTATTAATGTCACTCATTTGCTTCTGCTTTTATGCTAAAAATATGACCAAATTAACTGAAGAACTAAATCCTCAACTGATGAGATTACCTTATGAGGCCAACTCAATCCTGAATTGATGTGGATACATGGTTTTTCTAATCGAGTCTAGCTCTGTCTTAGATAAATAAATAAAAACATTGTATAAAAAGGCTAAGATTTTGAAGCTTACTTTCTACTTTTTCCTCTAATGTTCTTCAAGTTAAAAAGGTAAAATTTTGTCACTCCCTACGAAAATCGTCAGATCTTCCCTTAATCGGGATCAAGGCACCATACAACTGCCCTTTCACCCCTCGTGGTGGTGTAGAGCTAGCTGCTGGTGCTCACCACGTCCAGAGGCTACCTAGCATGTTTTGGAATGATTTTGAAATACTTGAAATCACTTTATCATGTAATCATTCAAAATCAATTGTTATGGTATGAAAATTTAATCATTCAAAATCAATTGTTATGGTATGAAAATTTAGTAATAAAGTGTAAAACCTAACATCAAATGGATTAAAAGTATGTCGGGATTGAGGCACCATGAGCTGCCCTCCAACCCCACGTGGTGGTGTAGAGCTAGCTGTTGCTGGCCACCTCGTCCTTTGACCCGAACAATGAAAGAGGCTACATAGCATGTTTTGGAGTGATTTTGGAATAGTTGAAATCACTTTGTCAAGTAATCATTCAAAATCAATTCTTATGGTATGAAAATTTAGTATTGAAATGTAAAACCTAACATACTGACTGATTAAAAGTATGTTTAGGAGTGACTTTGAATCCAAATATTGAAGAAACTAGAGTTAAAAAGCTAATCCATAACTAGAATTGTTATTAATTTGCAGTTGGCTAGTGTGAGGATGCTGCCATGGGCAAAAGCTAATCTGAATCACGCAGCTCAAGCTCTCATAATCTCCACAGGTTTTGTAACTTTTTCTTTTTCCCTCTTTAGCAGTCAAGTCATTTTATGGTTTGATTTGCTTTTCTTTACTAAAATGGAAAAAGATTTGATTTTTCAATTCAATGGCAGTGGCTGGAGCAGCATACTTCATAGTGGCTGACAAGACTGTTCTGGCAACAGCAAGAAGGAACTCCTTCAAGCAAAAATCCAACAGTGAAACATATGAATTCAATTGA

mRNA sequence

ATGGCGAAGAATGTGGCTCAGGCCTTTCTCGAGAGGAAAAATCTGGCCTCTCATGACCCAAAAGTGGCAATGGCAAAGCGCTGTGCTAAAGAGGGTGTGATAGCAGGAGCAAAAGCAGCTGCCATTGCTAGTATTGCCACTGCCATTCCTACTTTGGCTAGTGTGAGGATGCTGCCATGGGCAAAAGCTAATCTGAATCACGCAGCTCAAGCTCTCATAATCTCCACAGTGGCTGGAGCAGCATACTTCATAGTGGCTGACAAGACTGTTCTGGCAACAGCAAGAAGGAACTCCTTCAAGCAAAAATCCAACAGTGAAACATATGAATTCAATTGA

Coding sequence (CDS)

ATGGCGAAGAATGTGGCTCAGGCCTTTCTCGAGAGGAAAAATCTGGCCTCTCATGACCCAAAAGTGGCAATGGCAAAGCGCTGTGCTAAAGAGGGTGTGATAGCAGGAGCAAAAGCAGCTGCCATTGCTAGTATTGCCACTGCCATTCCTACTTTGGCTAGTGTGAGGATGCTGCCATGGGCAAAAGCTAATCTGAATCACGCAGCTCAAGCTCTCATAATCTCCACAGTGGCTGGAGCAGCATACTTCATAGTGGCTGACAAGACTGTTCTGGCAACAGCAAGAAGGAACTCCTTCAAGCAAAAATCCAACAGTGAAACATATGAATTCAATTGA

Protein sequence

MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN

Homology

[Close]

BLAST of HG10006671 vs. NCBI nr
Match: XP_038889722.1 (early nodulin-93-like [Benincasa hispida])

HSP 1 Score: 195.7 bits (496), Expect = 2.2e-46
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW
Sbjct: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKANLNH AQALIISTVAGAAYFIVADKTVLATARRNSFKQK N+E YEFN
Sbjct: 61  AKANLNHTAQALIISTVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]

BLAST of HG10006671 vs. NCBI nr
Match: XP_022999275.1 (early nodulin-93-like [Cucurbita maxima])

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQAFLER NLASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPTLASVRMLPW
Sbjct: 1   MAKNLAQAFLERNNLASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTLASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKANLNHAAQALIIS+VAGAAYFIVADKTVLATARRNSFKQK N+ETY+FN
Sbjct: 61  AKANLNHAAQALIISSVAGAAYFIVADKTVLATARRNSFKQKPNAETYDFN 111

[Close]

BLAST of HG10006671 vs. NCBI nr
Match: XP_023545661.1 (early nodulin-93-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.8 bits (486), Expect = 3.1e-45
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQ FLER NLASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPTLASVRMLPW
Sbjct: 1   MAKNLAQGFLERNNLASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTLASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKANLNHAAQALIIS+VAGAAYFIVADKTVLATARRNSFKQK N+ETYEFN
Sbjct: 61  AKANLNHAAQALIISSVAGAAYFIVADKTVLATARRNSFKQKPNAETYEFN 111

[Close]

BLAST of HG10006671 vs. NCBI nr
Match: XP_004139321.1 (early nodulin-93 [Cucumis sativus] >KGN60663.1 hypothetical protein Csa_019393 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 9.1e-45
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQAFLERKN+ASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPT ASVRMLPW
Sbjct: 1   MAKNLAQAFLERKNIASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTFASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKA+LNH AQALIISTVAGAAYFIVADKTVLATARRNSFKQK N+E YEFN
Sbjct: 61  AKAHLNHTAQALIISTVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]

BLAST of HG10006671 vs. NCBI nr
Match: KAA0061591.1 (early nodulin-93-like [Cucumis melo var. makuwa] >TYJ97800.1 early nodulin-93-like [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.2e-44
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQAFLERKNLASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPT ASVRMLPW
Sbjct: 1   MAKNLAQAFLERKNLASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTFASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKA+LNH AQALIISTVAGAAYFIVADKTVLATARRNSFKQK N+E YEFN
Sbjct: 61  AKAHLNHTAQALIISTVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]

BLAST of HG10006671 vs. ExPASy Swiss-Prot
Match: Q02921 (Early nodulin-93 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-32
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 10  LERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHAA 69
           LER +LAS D K+A AKRC+ EGV+AGAKAA +AS+A+AIPTLASVRMLPWA+ANLNH A
Sbjct: 8   LERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTA 67

Query: 70  QALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSE 107
           QALIIST   AAYFIVADKTVLATAR+NSF Q SNSE
Sbjct: 68  QALIISTATAAAYFIVADKTVLATARKNSFNQPSNSE 104

[Close]

BLAST of HG10006671 vs. ExPASy TrEMBL
Match: A0A6J1KEY8 (early nodulin-93-like OS=Cucurbita maxima OX=3661 GN=LOC111493696 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQAFLER NLASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPTLASVRMLPW
Sbjct: 1   MAKNLAQAFLERNNLASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTLASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKANLNHAAQALIIS+VAGAAYFIVADKTVLATARRNSFKQK N+ETY+FN
Sbjct: 61  AKANLNHAAQALIISSVAGAAYFIVADKTVLATARRNSFKQKPNAETYDFN 111

[Close]

BLAST of HG10006671 vs. ExPASy TrEMBL
Match: A0A0A0LFY1 (Early nodulin 93 protein OS=Cucumis sativus OX=3659 GN=Csa_2G006090 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.4e-45
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQAFLERKN+ASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPT ASVRMLPW
Sbjct: 1   MAKNLAQAFLERKNIASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTFASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKA+LNH AQALIISTVAGAAYFIVADKTVLATARRNSFKQK N+E YEFN
Sbjct: 61  AKAHLNHTAQALIISTVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]

BLAST of HG10006671 vs. ExPASy TrEMBL
Match: A0A5A7V781 (Early nodulin-93-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00100 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.7e-45
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQAFLERKNLASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPT ASVRMLPW
Sbjct: 1   MAKNLAQAFLERKNLASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTFASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKA+LNH AQALIISTVAGAAYFIVADKTVLATARRNSFKQK N+E YEFN
Sbjct: 61  AKAHLNHTAQALIISTVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]

BLAST of HG10006671 vs. ExPASy TrEMBL
Match: A0A1S3C6F4 (early nodulin-93-like OS=Cucumis melo OX=3656 GN=LOC103497382 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.7e-45
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQAFLERKNLASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPT ASVRMLPW
Sbjct: 39  MAKNLAQAFLERKNLASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTFASVRMLPW 98

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEFN 112
           AKA+LNH AQALIISTVAGAAYFIVADKTVLATARRNSFKQK N+E YEFN
Sbjct: 99  AKAHLNHTAQALIISTVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 149

[Close]

BLAST of HG10006671 vs. ExPASy TrEMBL
Match: A0A6J1G2N4 (early nodulin-93-like OS=Cucurbita moschata OX=3662 GN=LOC111450241 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 103/110 (93.64%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MAKNVAQAFLERKNLASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPW 60
           MAKN+AQAFLER NLAS+DPKVAMAKRCA+EGVIAGAKAAAIASIATAIPTLASVRMLPW
Sbjct: 1   MAKNLAQAFLERNNLASNDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTLASVRMLPW 60

Query: 61  AKANLNHAAQALIISTVAGAAYFIVADKTVLATARRNSFKQKSNSETYEF 111
           AKANLNHAAQALIIS+VAGAAYFIVADKTVLATARRNSFKQK N+ETYEF
Sbjct: 61  AKANLNHAAQALIISSVAGAAYFIVADKTVLATARRNSFKQKPNAETYEF 110

[Close]

BLAST of HG10006671 vs. TAIR 10
Match: AT5G25940.1 (early nodulin-related )

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 21  KVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHAAQALIISTVAGA 80
           K+  A+   + G IAGAKAAA+A++A+AIPT+A+VRM PWAKANLN+ AQALIIS+ + A
Sbjct: 26  KIHRAETSKQAGAIAGAKAAAVAAVASAIPTVAAVRMFPWAKANLNYTAQALIISSASIA 85

Query: 81  AYFIVADKTVLATARRNSFKQ 102
           A+FI ADKT+L  ARRN+  Q
Sbjct: 86  AFFITADKTILQGARRNTEAQ 106

The following BLAST results are available for this feature:

BLAST of HG10006671 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889722.1	2.2e-46	96.40	early nodulin-93-like [Benincasa hispida]	[more]
XP_022999275.1	2.4e-45	93.69	early nodulin-93-like [Cucurbita maxima]	[more]
XP_023545661.1	3.1e-45	93.69	early nodulin-93-like [Cucurbita pepo subsp. pepo]	[more]
XP_004139321.1	9.1e-45	92.79	early nodulin-93 [Cucumis sativus] >KGN60663.1 hypothetical protein Csa_019393 [...	[more]
KAA0061591.1	1.2e-44	92.79	early nodulin-93-like [Cucumis melo var. makuwa] >TYJ97800.1 early nodulin-93-li...	[more]

BLAST of HG10006671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02921	3.2e-32	78.35	Early nodulin-93 OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of HG10006671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KEY8	1.2e-45	93.69	early nodulin-93-like OS=Cucurbita maxima OX=3661 GN=LOC111493696 PE=4 SV=1	[more]
A0A0A0LFY1	4.4e-45	92.79	Early nodulin 93 protein OS=Cucumis sativus OX=3659 GN=Csa_2G006090 PE=4 SV=1	[more]
A0A5A7V781	5.7e-45	92.79	Early nodulin-93-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold28...	[more]
A0A1S3C6F4	5.7e-45	92.79	early nodulin-93-like OS=Cucumis melo OX=3656 GN=LOC103497382 PE=4 SV=1	[more]
A0A6J1G2N4	1.3e-44	93.64	early nodulin-93-like OS=Cucurbita moschata OX=3662 GN=LOC111450241 PE=4 SV=1	[more]

BLAST of HG10006671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25940.1	1.2e-18	61.73	early nodulin-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005050	Early nodulin 93 ENOD93 protein	PFAM	PF03386	ENOD93	coord: 21..98 e-value: 7.7E-38 score: 128.2
IPR005050	Early nodulin 93 ENOD93 protein	PANTHER	PTHR33605	EARLY NODULIN-93	coord: 13..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006671.1	HG10006671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane